Scaffold rumenHiSeq_NODE_3966431_len_29455_cov_0_870582

Overview

Basic Information

• Taxon OID: 2061766007
• Scaffold ID: rumenHiSeq_NODE_3966431_len_29455_cov_0_870582
• Source Dataset Name: Bovine rumen microbial communities fromthe University of Illinois at Urbana-Champaign, USA, that are switchgrass associated - Sample 470
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29505
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (32.65%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Bovine Rumen → Switchgrass-Associated Bovine Rumen Microbial Communities From Urbana, Illinois, Usa

Source Dataset Sampling Location

• Location Name: University of Illinois at Urbana - Champaign, Illinois, USA
• Coordinates
  • Lat. (^o): 40.096
  • Long. (^o): -88.2315

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015685	Metagenome / Metatranscriptome	252	Y
F023770	Metagenome / Metatranscriptome	208	Y
F096242	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
_HiSeq_17540390	F015685	N/A	MAKIKLHGMFARVMGKFNRSESLYFKRCGCKKEQLGVDLLNPSKANHAXXXXQEQLGVDLLNPSKANHTKNVQAQNALKTAAQAAKTALADPTERATLEAGFAAQKKYKSLFAFTVAQKYVKPNFGD
_HiSeq_17540400	F023770	AGG	MAKVEFDPGIDSVRGILMGTDPFYIRRYPGREGVMHIVQARPIIVPAFISYKDEXXXXARPNRSDHIPSEAEAHTRIVFAQKYGHEKHLAFLERKFKDQLTINFID
_HiSeq_17540510	F096242	N/A	MLLKLIKIREMNSGAHCEVWEANLLMGDHFLARVFVLNEHLPLELIYRLTVSWRGICIQGRHCGWQWDNEVAERMITHYLEQIQASHEEIRIEVCRPKPDLPGYPEVDYHPDDYPIVLIDDLEEDEIPEEPYEEPEYEV