Scaffold rumenHiSeq_NODE_3599960_len_40179_cov_1_335673

Overview

Basic Information

• Taxon OID: 2061766007
• Scaffold ID: rumenHiSeq_NODE_3599960_len_40179_cov_1_335673
• Source Dataset Name: Bovine rumen microbial communities fromthe University of Illinois at Urbana-Champaign, USA, that are switchgrass associated - Sample 470
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40229
• Total Scaffold Genes: 75
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (54.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Bovine Rumen → Switchgrass-Associated Bovine Rumen Microbial Communities From Urbana, Illinois, Usa

Source Dataset Sampling Location

• Location Name: University of Illinois at Urbana - Champaign, Illinois, USA
• Coordinates
  • Lat. (^o): 40.096
  • Long. (^o): -88.2315

Associated Families

Family	Category	Number of Sequences	3D Structure?
F074260	Metagenome / Metatranscriptome	119	Y
F098367	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
_HiSeq_18662990	F098367	GGAG	MTDPIKQLQHYNMRLTTVLNELAVLEDYEGADYSEFVTDFGFLTVQLEQRRERLQRRGRT
_HiSeq_18663300	F074260	N/A	MAEKKKTAKKTKKADLLPFDELPIAVKRNRRLLYEXXXX