Scaffold rumenHiSeq_NODE_3543747_len_46859_cov_1_492051

Overview

Basic Information

• Taxon OID: 2061766007
• Scaffold ID: rumenHiSeq_NODE_3543747_len_46859_cov_1_492051
• Source Dataset Name: Bovine rumen microbial communities fromthe University of Illinois at Urbana-Champaign, USA, that are switchgrass associated - Sample 470
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 46909
• Total Scaffold Genes: 67
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (43.28%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Bovine Rumen → Switchgrass-Associated Bovine Rumen Microbial Communities From Urbana, Illinois, Usa

Source Dataset Sampling Location

• Location Name: University of Illinois at Urbana - Champaign, Illinois, USA
• Coordinates
  • Lat. (^o): 40.096
  • Long. (^o): -88.2315

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051611	Metagenome	143	Y
F093002	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
_HiSeq_17685700	F093002	AGGA	MTEQEFDQQVWRRFDVVTTDTGIETTVMNVCFSTRSVRIFVKNAPPEWMPCKRIVTHTTRKGDTADEGTIIEELHDKIMKQCDQIERLKNEKAQLQDKISKNYLSDILCAINMMKQGLAEKKNKLEKVERGIDLVVSTLAKIE
_HiSeq_17686230	F051611	AGAAG	MVKDKVTKDDLMKFNVGDQKVFTLPSYGLARSAQSYAHQMKKATLGTKDQREFKAIIGDPNPENGQTGVTITRIA