NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold rumenHiSeq_NODE_115598_len_1170_cov_0_541880

Scaffold rumenHiSeq_NODE_115598_len_1170_cov_0_541880


Overview

Basic Information
Taxon OID2061766007 Open in IMG/M
Scaffold IDrumenHiSeq_NODE_115598_len_1170_cov_0_541880 Open in IMG/M
Source Dataset NameBovine rumen microbial communities fromthe University of Illinois at Urbana-Champaign, USA, that are switchgrass associated - Sample 470
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1220
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Bovine Rumen → Switchgrass-Associated Bovine Rumen Microbial Communities From Urbana, Illinois, Usa

Source Dataset Sampling Location
Location NameUniversity of Illinois at Urbana - Champaign, Illinois, USA
CoordinatesLat. (o)40.096Long. (o)-88.2315Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057036Metagenome / Metatranscriptome136N

Sequences

Protein IDFamilyRBSSequence
_HiSeq_18804460F057036N/AYLKYIEPHLATKLVEFILKDNPNEELKSLYKALSIKTKNFDKISSEKFMSESELTSLKSKTESDIKDYEEKLKGFLNLAENCEKQKTHDLTAFSLGKKIIEQTSPIEIIQFSNLLFDTKDFSKASMILNSFSIFHENNMKTKSKAIYTLYLLFSLKVFSGEKTEDIPEIFSRIVKGVEQLKNIFDSGFKNTDFDGVDKEQVDFREILMYRGYLLHWALFLIKYDSTLFLDTLLDDKYFTLIESSFIYLIKYLVVFAIINGNRKYINKLKEAVSKKKNFITAHRDCFIFLLEDIIVYFNSENAKKSLEECKNMMKMDYFLYEYIDIFEKKVKEFMIENSIILNESLNIEDMKFILGEDDSKTKKLLIEKIKYLYPNAEIKEEDKKINYEVSDDEINEFYKIKTEDMY
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