NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GB_4MN_MetaGALL_nosff_rep_c49708

Scaffold GB_4MN_MetaGALL_nosff_rep_c49708


Overview

Basic Information
Taxon OID2061766003 Open in IMG/M
Scaffold IDGB_4MN_MetaGALL_nosff_rep_c49708 Open in IMG/M
Source Dataset NameHydrothermal vent microbial communities from Guaymas and Carmen Basins, Gulf of California, Sample 457
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterPennsylvania State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)556
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vents → Hydrothermal Vent Microbial Communities From Guaymas And Carmen Basins, Gulf Of California

Source Dataset Sampling Location
Location NameGulf of California
CoordinatesLat. (o)27.506Long. (o)-111.347Alt. (m)Depth (m)1996
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005608Metagenome / Metatranscriptome395Y
F022429Metagenome / Metatranscriptome214Y

Sequences

Protein IDFamilyRBSSequence
GB_4MN_00270110F005608N/ATIEVLEEGELIFGSPTAGKYFVRRYEDGEEMGGGFFKTKKEALTHAREYKKSE
GB_4MN_00270120F022429GAGMSSITSFTEIWDGPSFLERKPSALRMAARDEAGKKKRXKXGKLKXGEHFAKNWDKDLWD

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