Scaffold BDMC2_contig12431

Overview

Basic Information

• Taxon OID: 2061766000
• Scaffold ID: BDMC2_contig12431
• Source Dataset Name: Benzene-degrading bioreactor microbial communities from Toronto, Ontario, Canada, that are methanogenic - September 2009 gDNA_4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 915
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioremediation → Hydrocarbon → Benzene → Bioreactor → Benzene-Degrading Bioreactor → Benzene-Degrading Bioreactor Microbial Communities From Toronto, Ontario, Canada, That Are Methanogenic

Source Dataset Sampling Location

• Location Name: Toronto, Ontario
• Coordinates
  • Lat. (^o): 43.658712
  • Long. (^o): -79.396003

Associated Families

Family	Category	Number of Sequences	3D Structure?
F064732	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
BDMC2_00257270	F064732	GGA	MPKVSEFKWKDMEAEAEAATAAARERCTMPLAQSAERHVRFPSSPMAPGQFIAATATRSI