Scaffold FACENC_GAMC6GA01BF6Z3

Overview

Basic Information

• Taxon OID: 2040502001
• Scaffold ID: FACENC_GAMC6GA01BF6Z3
• Source Dataset Name: Soil microbial communities from sample at FACE Site 2 North Carolina CO2+
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 515
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Face And Otc Sites In Usa

Source Dataset Sampling Location

• Location Name: Orange County, North Carolina
• Coordinates
  • Lat. (^o): 36.0
  • Long. (^o): -80.934
  • Depth (m): .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018420	Metagenome / Metatranscriptome	235	Y

Sequences

Protein ID	Family	RBS	Sequence
FACENCE_1286060	F018420	N/A	MAAGTVTALKLVGGYTPSKNIAIIGYGGAKEAVDQVKAGTWYATLGLYPASESEIGIAALNDALNGKSTPNLVNIINPSTRPAIIDAAFLKAHPDFHPDWTLEGGIN