Scaffold ErSWdraf_F5BXKTZ02IIDLJ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold ErSWdraf_F5BXKTZ02IIDLJ

Scaffold ErSWdraf_F5BXKTZ02IIDLJ

Overview

Basic Information
Taxon OID	2035265000 Open in IMG/M
Scaffold ID	ErSWdraf_F5BXKTZ02IIDLJ Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Swedish Lakes - surface of Lake Erken
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Royal Institute of Technology
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	507
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Swedish Lakes

Source Dataset Sampling Location
Location Name	Lake Erken, Sweden
Coordinates	Lat. (^o)	59.84	Long. (^o)	18.63	Alt. (m)		Depth (m)	0 to 2
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F040107	Metagenome	162	N
F090404	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
ErSWdraft_11127640	F040107	GGAGG	MTGIEALSLLKDGKTLRREFWEPHEKCKALDFFGQWIVHLVKEQDYEKLDKELESIFQNSFTFTKTTFDDFFGLFDT
ErSWdraft_11127670	F090404	AGTAG	MAGKRVRKTNWESKTAFFLYDKEDNTFDFYEVLDGEVCRTQFYTELNLTPKDLMSDFWEVVE

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