Scaffold ErSWdraf_F5BXKTZ02GLJVZ

Overview

Basic Information

• Taxon OID: 2035265000
• Scaffold ID: ErSWdraf_F5BXKTZ02GLJVZ
• Source Dataset Name: Freshwater microbial communities from Swedish Lakes - surface of Lake Erken
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Royal Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 517
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Swedish Lakes

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.84
  • Long. (^o): 18.63
  • Depth (m): 0 to 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055721	Metagenome / Metatranscriptome	138	Y
F077968	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
ErSWdraft_10926330	F055721	GGA	MNREAYFKHIEENDTYPEHSHKWIVRTYTGELNYRIFGTFETKEEAKEFIENYKVKYTTKGFIT
ErSWdraft_10926350	F077968	AGGAGG	MSDTFKKWTIWTSISLFEFCVWSWRNHMWNHLDGYPNEDRMRELFWHYINYGNTTTYYES