Scaffold YNPsite19_CeleraDRAF_33591

Overview

Basic Information

• Taxon OID: 2022920017
• Scaffold ID: YNPsite19_CeleraDRAF_33591
• Source Dataset Name: Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP19 Cistern Spring
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 813
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Caldivirga → unclassified Caldivirga → Caldivirga sp. MU80 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, WY
• Coordinates
  • Lat. (^o): 44.7230812
  • Long. (^o): -110.7040247

Associated Families

Family	Category	Number of Sequences	3D Structure?
F101502	Metagenome	102	N
F105516	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
YNPsite19_CeleraDRAFT_87700	F105516	AGG	MPKAVVRVLALGRVSLNLRTFRVIENERVGITDDGVVKCLGGGCSANGVFITLEADRPSARELFEALRRVRVLEFEVEVIGLPRQLLSRLEFLTGEPISGNAKVRYTWRSMPSLEELP
YNPsite19_CeleraDRAFT_87710	F101502	N/A	MSQVPKTPIIAFTVILALGLGIVVIGSTSPIKPGIGAVLVLLASMACAPVYAWFRHPGLLITIELGVGVLLVIIIVNWLHGISPLTSLKWYYNALRTLITPIAS