Scaffold YNPsite01_CeleraDRAF_85763

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold YNPsite01_CeleraDRAF_85763

Scaffold YNPsite01_CeleraDRAF_85763

Overview

Basic Information
Taxon OID	2022920009 Open in IMG/M
Scaffold ID	YNPsite01_CeleraDRAF_85763 Open in IMG/M
Source Dataset Name	Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP1 Alice Springs, Crater Hills
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	647
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Source Dataset Sampling Location
Location Name	Yellowstone National Park, WY
Coordinates	Lat. (^o)	44.6533633	Long. (^o)	-110.4776669	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F035135	Metagenome / Metatranscriptome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
YNPsite01_CeleraDRAFT_93090	F035135	N/A	NSIYSQQFISSFFFDFIDTNDSYISLTFLMKNVFRIYLDVWKKQIEFVDYLREFKDEFESTYNYYQELLFTTKQNIFEKTGIISCFFTFDDDLREILTIYTNELFCNFIDKLK

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