Scaffold YNPsite03_CeleraDRAF_scf1118686649105

Overview

Basic Information

• Taxon OID: 2022920002
• Scaffold ID: YNPsite03_CeleraDRAF_scf1118686649105
• Source Dataset Name: Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP3 Monarch Geyser, Norris Geyser Basin
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 16038
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (58.62%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Alphalipothrixvirus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, WY
• Coordinates
  • Lat. (^o): 44.7242925
  • Long. (^o): -110.7056131

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056742	Metagenome / Metatranscriptome	137	Y
F061983	Metagenome / Metatranscriptome	131	Y
F077499	Metagenome / Metatranscriptome	117	Y
F077502	Metagenome / Metatranscriptome	117	N
F080247	Metagenome / Metatranscriptome	115	Y
F087442	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
YNPsite03_CeleraDRAFT_21990	F061983	AGGAGG	LKKYVFKVKVVQIKLVNDEGVLSEQEFEHVKKTRIYKGMKVLEIKDLGFDSFWRFTHYYELVAVSEGGGLFDCYYGDVIDVEKLKDVGAIVVKENDSEPVRTMKTLVARWYNKKLVEEEKAYETCTKFVM
YNPsite03_CeleraDRAFT_22030	F087442	GAGG	MMREGLVKAGNLVIDCKPCYVAGTGFTKDDIYVISEGTVVFKWYDKIAVITVGEEGTKVNLLDIVDVRFLVERNENCLATRL
YNPsite03_CeleraDRAFT_22140	F080247	N/A	MIVWGKTIECIIDVDVNYLNGELFNSQFRVKGKFLVFGNLYTLEKTTPGGETIQICSPVDATFMAYYQGMVAVMSFYIKERDIYANVSLTDPDTIKEFMTMSTYYRKYGVSIPNVLDKIMYRKVPT
YNPsite03_CeleraDRAFT_22170	F077502	GAG	MTDVAHIVIWIEKNLPEEGKLSELIDNVFSLIQEIILNNISQGKQPISFESVREIADTFKEVIYRSIEQTIGTLTEEVKEQVDAYFLKKLNDIYDKYYE
YNPsite03_CeleraDRAFT_22190	F077499	AGG	MMGDLFIFPNESLKPVSYPNITNAEIIFVLTISIPIGGHPESDTPMEEKMKFLSTYTPLEFQKLYYMKTIDKALDILKHLLYTREDNVLFEIANKINSLYDVKELINKVKDVECAKDLKTLNVTLTEAKRYIYPDISLSRYASSQAKQLGIKKYEYYARLFQCYVETDKNLDMLTLFRVSNLVFNFLRINNLSHIIKKMQFKDENINRIAEKIKQRVKITLDAMTDRKPIEADINVLNSITIRIKEIDLG
YNPsite03_CeleraDRAFT_22200	F056742	GGAGG	MFTSEVEKVYQVKVKSCEEFCKFYVLFLSVAEMLYGKHYNYAIFKAITRGRPNLYMCLKCNSTLTAEESVTHTLQHMKELGYKPLSYEENI