Scaffold YNP20_FZTT40259_g1

Overview

Basic Information

• Taxon OID: 2016842008
• Scaffold ID: YNP20_FZTT40259_g1
• Source Dataset Name: Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP20 Bath Lake Vista Annex - Purple-Sulfur Mats
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 784
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, WY
• Coordinates
  • Lat. (^o): 44.96507
  • Long. (^o): -110.71215

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005302	Metagenome / Metatranscriptome	405	Y
F056643	Metagenome / Metatranscriptome	137	N

Sequences

Protein ID	Family	RBS	Sequence
YNP20_22000	F005302	AGGAG	MAHSGVIAGLYAGNFAVEISTDGTNWTAVSDATVKIDDVEMTRPSGEAYVGGSSDYATITIGKREPVEITLTFLYSEATGAAATAIYDQFESATPRLGVRWSPTGLVASARAYATSNDGNATGLGVITGVTLSALIQAK
YNP20_22010	F056643	N/A	GRTRAVAGADYPTIGGLRLIEGGVYTPTRATRAVWEIDDLLLVRDVGMGRGVSDTATALVNYIEDYVAQLRFAWLARGDVQLLNVSGIIDVVKYGERAYEGATVTTRFAHLVRAPSA