Scaffold YNP3_C2458

Overview

Basic Information

• Taxon OID: 2014031003
• Scaffold ID: YNP3_C2458
• Source Dataset Name: Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP3 Monarch Geyser, Norris Geyser Basin
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4436
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Acidilobales → Acidilobaceae → Acidilobus → unclassified Acidilobus → Acidilobus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, WY
• Coordinates
  • Lat. (^o): 44.7242925
  • Long. (^o): -110.7056131

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013613	Metagenome / Metatranscriptome	269	Y
F077496	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
YNP3_73300	F077496	N/A	VARLSAPQEEVGARLGRLRKWPEGAVIMTIYIPIDLRNEIERRARAKRMSLSEYAVRLLLSGLEAEKAEEANKDAKAKEVP
YNP3_73310	F013613	AGGAGG	MPRPRKFPDGGVVISTYVPYELYEKVRELARSKGKNISEVAYELIKRGLEASGASAAAADPPDPPEDALHVALKGLEPLERERVLQFVKGLEDAEAKLAKLGPNVRQARAGRPTLLDVVNQQEVTKLKGTVVDLKRTYERSIKRIVRDPVALNMIGERLLRLMKELGVPP