Scaffold YNP3_C1478

Overview

Basic Information

• Taxon OID: 2014031003
• Scaffold ID: YNP3_C1478
• Source Dataset Name: Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP3 Monarch Geyser, Norris Geyser Basin
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1404
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, WY
• Coordinates
  • Lat. (^o): 44.7242925
  • Long. (^o): -110.7056131

Associated Families

Family	Category	Number of Sequences	3D Structure?
F076263	Metagenome / Metatranscriptome	118	Y
F080247	Metagenome / Metatranscriptome	115	Y
F081547	Metagenome / Metatranscriptome	114	Y
F087442	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
YNP3_45950	F080247	N/A	MIVWGKTIECIIDVDVNYLNGELFNSQFRVKGKFLIFGNLYTLEKTTPGGETIQICSPVDATFMAYYQGMVAIMSFYIKEKDIYANVSLTDPDTIKEFMTMSTYYRKYGVSIPNVLDKIMYRKVPT
YNP3_45960	F076263	GGA	MLSAEDLSAILDDLEDICARIPDSVTFHPTLEIHRHHANEEAMYIKFDCRDHKYTLTIVRNGVAKTTRVSSREQLYRRLFPEYSPGYSGSYTEEFWGGE
YNP3_45970	F081547	GGTGG	MPYLRGVFINFGEETYYLSCGIVNGGNLDTETYTVNQPSLMMVRLGRDLYIVTSELKLIIPVEPIKTLLSSETSKVYNEMLSQGNEVKPA
YNP3_45980	F087442	GAGG	MMREGLVKAGNLVVDCKPCYVAGTGFTKDDIYVISEGTVVFKWYDKIAVITVGEEGTKVNLLDIVDVRFLVERNENCLATRL