Scaffold YNP3_C1199

Overview

Basic Information

• Taxon OID: 2014031003
• Scaffold ID: YNP3_C1199
• Source Dataset Name: Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP3 Monarch Geyser, Norris Geyser Basin
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3756
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, WY
• Coordinates
  • Lat. (^o): 44.7242925
  • Long. (^o): -110.7056131

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032562	Metagenome	179	N
F058700	Metagenome / Metatranscriptome	134	N
F076880	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
YNP3_35810	F032562	AGGAGG	VSEGKGSKETLLSEDRLSVLTYADTNHNVTRYYAEVEVNGRKTTSEKHASTDLFKDFERTVESLYRKAEILQTLSSPRAADALAEDMLNDIAELVLLTRALLDKTKSWRLWKQEP
YNP3_35840	F076880	GAGG	MAPEKAVRAFVLRIVKGYRAFLRTEDVFPDDPWAHASDLADRLYSAAYAYSYMDSSDETELIRRLAQVSYNDFNELKAVWDTFGESQRERAFRQLLYAVAKIGYEELLDAIANSWELKTNADKRRQVIDAFKRYITDDHANSRMRLAVALIDVFWPNEEARKESVSRIIALWNGLSLDRFIPRDKVEKLIEKHILSIEAPKAVEGTAETR
YNP3_35850	F058700	AGG	MGMSEEEMTADDIMDYLESAMVNGWLEDLVRSDFPPWADAYEQIQMLEDIEGDGDDYTLNDEDSIDHLSRLSDMDYDTFKEMWDRLTNEQKIEVLDSVIHEMALYGIEWLFKDIVYDLHNEKYNKDAGKVVEAAKDYLNKRISFDDLMDRIADVFWPNEEDKKSTAYEDFLRGTGLADYIDKDELNEIIKEYLVEKVRHRLP