Scaffold DCKB1_C5928

Overview

Basic Information

• Taxon OID: 2013843002
• Scaffold ID: DCKB1_C5928
• Source Dataset Name: Groundwater dechlorinating microbial communities from synthetic mineral medium in Toronto, Ontario, Canada - Site contaminated with chlorinated ethenes
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1438
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioremediation → Tetrachloroethylene And Derivatives → Chloroethene → Bioreactor → Enriched Contaminated Groundwater → Enriched Contaminated Groundwater Dechlorinating Microbial Communities From Synthetic Mineral Medium In Toronto, Ontario, Canada (Kb-1)

Source Dataset Sampling Location

• Location Name: Toronto, Ontario
• Coordinates
  • Lat. (^o): 43.449776
  • Long. (^o): -80.489086

Associated Families

Family	Category	Number of Sequences	3D Structure?
F091988	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
DCKB1_189800	F091988	N/A	XXXXXXXXXXXXAQASQDALTLTLTMSGVDYEEKVSNFRATGFEKLVCNPYIVAKEPVSVMFQAYEVKAGNPTQVVYTYSLKGSTTSELTLTMDWTIGPCAPAYDESNVKAQRNPLLTTYHFEFKVPVK