Scaffold YNP6_FUBG4549_g1

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold YNP6_FUBG4549_g1

Scaffold YNP6_FUBG4549_g1

Overview

Basic Information
Taxon OID	2013515000 Open in IMG/M
Scaffold ID	YNP6_FUBG4549_g1 Open in IMG/M
Source Dataset Name	Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP6 White Creek Site 3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	847
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Source Dataset Sampling Location
Location Name	Yellowstone National Park, WY
Coordinates	Lat. (^o)	44.733519	Long. (^o)	-110.404033	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F056643	Metagenome / Metatranscriptome	137	N

Sequences

Protein ID	Family	RBS	Sequence
YNP6_251330	F056643	N/A	VASQANWSDAAQLPVRIIPVLGGLRLIEGGVYTATRATRAVWEIDDLLLVRDVGMGRGVADTATALVEYVEEYVAKLRFAWLARGDVQLINVFGNIDVIRYGERAYEGVTMTVRFAHLIRSPSV

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