Scaffold lwFormate_BCIX_C2403

Overview

Basic Information

• Taxon OID: 2006207004
• Scaffold ID: lwFormate_BCIX_C2403
• Source Dataset Name: Sediment methylotrophic communities from Lake Washington - Formate enrichment
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 1499
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Sediment → Sediment → Sediment Methylotrophic Communities From Lake Washington, Seattle, Washington, Usa

Source Dataset Sampling Location

• Location Name: Lake Washington, Seattle, USA
• Coordinates
  • Lat. (^o): 47.676484
  • Long. (^o): -122.228394
  • Depth (m): 63

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056700	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
LWFOR_17381	F056700	N/A	AAQEMSQGFVYAYQTALEAALSENNNPRWKPMIPQIFARLLHYHGTDAKLRAFRHERWIPAKWTNLHQLHARAIELGIARVAVALPSAGPGAMQWSTEQEYVYALLIQQLNMGSLSPAEIDWASAQMRAWGRKLEFETVPRSSEGFYVDFASKRGLVRRTGNESGPTLHFLDTTPLADQLERAMHSLRQADIGEPGAAAALNLQRIGILEKVRPVVAPNLHGDLRRSPRLPVTVAAKVRVGLARICAEMTPRELVEPANDANAAGEQIEVFAVADRPRARRHAPDEHDSLAASIAPVGDQAWEVKDRSVAGLRISASGGIGQSLVLGALVAIRQTDAVEWVLGAVRRLNKVSNDEVEAGVSIIADRVVPITVHARRAAKEDLGMVVNGVDVSMMGSRFGALYLPPPSRPEKPLTVKTLIIPTSEYVDGRNLILTTGHSVYTIALRHLVEQRADWSWTAFQIIDKKPTNY