NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F106156

Metagenome / Metatranscriptome Family F106156

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F106156
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 57 residues
Representative Sequence VGHARARKIPAQLVEDEDYQLRYERVAGIDIAKAKADVCTRLPPAREGGRRASRVE
Number of Associated Samples 90
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 0.00 %
% of genes from short scaffolds (< 2000 bps) 0.00 %
Associated GOLD sequencing projects 85
AlphaFold2 3D model prediction Yes
3D model pTM-score0.16

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (100.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(18.000 % of family members)
Environment Ontology (ENVO) Unclassified
(20.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(44.000 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 29.76%    β-sheet: 0.00%    Coil/Unstructured: 70.24%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.16
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF02371Transposase_20 2.00
PF04149DUF397 1.00
PF00106adh_short 1.00
PF01548DEDD_Tnp_IS110 1.00
PF07690MFS_1 1.00
PF00196GerE 1.00
PF05368NmrA 1.00
PF02641DUF190 1.00
PF13280WYL 1.00
PF00583Acetyltransf_1 1.00
PF13592HTH_33 1.00
PF01527HTH_Tnp_1 1.00
PF13515FUSC_2 1.00
PF00872Transposase_mut 1.00
PF13358DDE_3 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG3547TransposaseMobilome: prophages, transposons [X] 3.00
COG1993PII-like signaling proteinSignal transduction mechanisms [T] 1.00
COG3328Transposase (or an inactivated derivative)Mobilome: prophages, transposons [X] 1.00


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

NameRankTaxonomyDistribution
UnclassifiedrootN/A100.00 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil18.00%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere11.00%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa9.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil6.00%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil6.00%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment4.00%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil4.00%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil4.00%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil3.00%
Boreal Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil3.00%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil2.00%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil2.00%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil2.00%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland2.00%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Soil2.00%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil2.00%
BogEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Bog2.00%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland1.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.00%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil1.00%
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil1.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil1.00%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil1.00%
BogEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Bog1.00%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil1.00%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere1.00%
Agricultural SoilEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil1.00%
Termite GutHost-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut1.00%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere1.00%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.00%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere1.00%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere1.00%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere1.00%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere1.00%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001408Arctic peat soil from Barrow, Alaska - NGEE Surface sample F52-2 deep-092012EnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300003505Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)EnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005345Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaGEnvironmentalOpen in IMG/M
3300005434Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaGEnvironmentalOpen in IMG/M
3300005436Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaGEnvironmentalOpen in IMG/M
3300005535Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaGEnvironmentalOpen in IMG/M
3300005614Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2Host-AssociatedOpen in IMG/M
3300005921Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6EnvironmentalOpen in IMG/M
3300005994Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049EnvironmentalOpen in IMG/M
3300006028Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaGEnvironmentalOpen in IMG/M
3300006032Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145EnvironmentalOpen in IMG/M
3300006237Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)Host-AssociatedOpen in IMG/M
3300006579Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAB (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006755Agricultural soil microbial communities from Georgia to study Nitrogen management - GA PlitterEnvironmentalOpen in IMG/M
3300006806Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100EnvironmentalOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009545Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaGHost-AssociatedOpen in IMG/M
3300010162Labiotermes labralis P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Lab288 P1 (version 2)Host-AssociatedOpen in IMG/M
3300010371Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1EnvironmentalOpen in IMG/M
3300010373Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4EnvironmentalOpen in IMG/M
3300010379Sb_50d combined assemblyEnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300010876Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300010880Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300012205Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaGEnvironmentalOpen in IMG/M
3300012208Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaGEnvironmentalOpen in IMG/M
3300014166Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015EnvironmentalOpen in IMG/M
3300014492Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaGEnvironmentalOpen in IMG/M
3300016294Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178EnvironmentalOpen in IMG/M
3300016319Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00HEnvironmentalOpen in IMG/M
3300017924Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5EnvironmentalOpen in IMG/M
3300017937Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4EnvironmentalOpen in IMG/M
3300017942Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3EnvironmentalOpen in IMG/M
3300017970Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300017973Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MGEnvironmentalOpen in IMG/M
3300018046Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10EnvironmentalOpen in IMG/M
3300020580Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-MEnvironmentalOpen in IMG/M
3300021086Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300021404Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-OEnvironmentalOpen in IMG/M
3300021474Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-OEnvironmentalOpen in IMG/M
3300021477Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-OEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300025898Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025906Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025916Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025928Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025929Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026088Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026291Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049 (SPAdes)EnvironmentalOpen in IMG/M
3300027030Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF041 (SPAdes)EnvironmentalOpen in IMG/M
3300027855Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)EnvironmentalOpen in IMG/M
3300028808Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_2EnvironmentalOpen in IMG/M
3300028863Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_1EnvironmentalOpen in IMG/M
3300029944II_Palsa_E1 coassemblyEnvironmentalOpen in IMG/M
3300029951III_Palsa_N1 coassemblyEnvironmentalOpen in IMG/M
3300029955II_Bog_E2 coassemblyEnvironmentalOpen in IMG/M
3300029988Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E2_3EnvironmentalOpen in IMG/M
3300029999I_Palsa_E3 coassemblyEnvironmentalOpen in IMG/M
3300030007I_Palsa_E1 coassemblyEnvironmentalOpen in IMG/M
3300030617II_Palsa_N2 coassemblyEnvironmentalOpen in IMG/M
3300030906Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N2_3EnvironmentalOpen in IMG/M
3300031543Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20EnvironmentalOpen in IMG/M
3300031640Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031715Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05EnvironmentalOpen in IMG/M
3300031736Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21EnvironmentalOpen in IMG/M
3300031751Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24EnvironmentalOpen in IMG/M
3300031777Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24EnvironmentalOpen in IMG/M
3300031819Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21EnvironmentalOpen in IMG/M
3300031833Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178EnvironmentalOpen in IMG/M
3300031893Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28EnvironmentalOpen in IMG/M
3300031910Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)EnvironmentalOpen in IMG/M
3300031912Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)EnvironmentalOpen in IMG/M
3300031941Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080EnvironmentalOpen in IMG/M
3300031947Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000HEnvironmentalOpen in IMG/M
3300032001Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)EnvironmentalOpen in IMG/M
3300032002Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3Host-AssociatedOpen in IMG/M
3300032008Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18EnvironmentalOpen in IMG/M
3300032059Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27EnvironmentalOpen in IMG/M
3300032091Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25EnvironmentalOpen in IMG/M
3300032160Sb_50d combined assembly (MetaSPAdes)EnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M
3300032770Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5EnvironmentalOpen in IMG/M
3300032954Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2EnvironmentalOpen in IMG/M
3300032955Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5EnvironmentalOpen in IMG/M
3300033134Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2EnvironmentalOpen in IMG/M
3300033158Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI20206J14855_105208923300001408Arctic Peat SoilVGNARARKIPAQLVEDEDYQLRHERVAGIDIAKAKADVCTRLPPAREGGRRASR
JGIcombinedJ26739_10161046213300002245Forest SoilVGHARARKIPAQLVEDEDYQLRHERAAGIDIAKAKADVCTRLPPARDGG
JGIcombinedJ26739_10163502523300002245Forest SoilVGHARARKVPAQLVEDEDYQLRYERVAGIDVAKAKADVCTRLPAAREGGRRV
JGIcombinedJ51221_1034237513300003505Forest SoilVGNARARKVPAQVVEDEDYQLRHERVAGIDIAKAKADVCTRLPPAREGGRRASRVEASVPATAAAILALAALLLAD
Ga0066388_10049118613300005332Tropical Forest SoilLGHARARKIPAQLVEDEDYQLRHERVAGIDVAKAKADVCTRLPPGREGGRR
Ga0070692_1096687323300005345Corn, Switchgrass And Miscanthus RhizosphereVGHARARKIPAQLVEDEGYQLRYERVAGIDIAKAKGDVCTRLPPVREGGRRASRVEE
Ga0070709_1132354813300005434Corn, Switchgrass And Miscanthus RhizosphereMGNARARKIPAQLIEDEHYQLRYERVAGTGVAKAKADVCTRLPPQRDGGRRTSRVEEVPARARD
Ga0070713_10002505113300005436Corn, Switchgrass And Miscanthus RhizosphereVGHARARKIPAQLVEDEDYQLRYERVAGIDIAKAKADVCTRLPPAREGGRRASRVE
Ga0070713_10241999723300005436Corn, Switchgrass And Miscanthus RhizosphereMGNARARKVPARLVEDEDYQLRHERVAGIDVAKAKADVCTRLPPAREGGRRAS
Ga0070684_10163718523300005535Corn RhizosphereVGNARARKVPAQLVEDEDYHLRHERVAGIDIAKAKADVCTRLPPARDGGRRASRVEEVPARAADV
Ga0068856_10199200313300005614Corn RhizosphereVGHARARKIPAQLVEDEDYQLRCERVAGIDIAKAKADVCTRLPPAREGGRRASRVEE
Ga0070766_1110753913300005921SoilMGNARARKVPARLVEDEDYQLRHERVAGIDVAKAKADVCTRLPPAREGGRRASKVE
Ga0066789_1040025423300005994SoilVGHARARKIPAQLVEDEEYQLSHERVAGIDIAKAKADVCTRLPPQRDG
Ga0070717_1027232213300006028Corn, Switchgrass And Miscanthus RhizosphereMGNARARKIPAQLIEDEHYQLRYERVAGTGVAKAKADVCTRLPPQRDGGRRTSRVEEVPARARDILD
Ga0070717_1037989613300006028Corn, Switchgrass And Miscanthus RhizosphereVGHARARKVSAQLVEDEDYQLRYERVAGIDVAKAKADVCTRLPPAREGGR
Ga0066696_1060218613300006032SoilMGRARARRIPAQLVEDEDYQLRHERVAGIDIAKAKADVCTRLPPVREGGRRA
Ga0097621_10240800713300006237Miscanthus RhizosphereVGNARKGKIPAQLVEDEDYQLRHERVAGIDIAKAKADVCTRLPPSRAGGRRASRVEEVPATARE
Ga0074054_1109524913300006579SoilVGRARARRIPAQLVEDEDYQLRHERVAGIDIAKAKADVCTRLPPARDGGRRASR
Ga0079222_1030698913300006755Agricultural SoilVGHARARKIPAQLAGDEDCQLRHERVAGTGIAKAKADVCTRLPPARDGGRRASRLEEVPATA
Ga0079222_1041435813300006755Agricultural SoilVGHVRARKVPAQLVEDEDYQLRYERVAGIDVAKAKADVCTRLPAAREGGRWASRVEEVGA
Ga0079220_1066562323300006806Agricultural SoilLGNVRARKIPARLVEDEDYQLRHERVAGIDIAKAKADVCTRLPPRRRGREEQGGV
Ga0075425_10044813423300006854Populus RhizosphereMGNARARKIPAQLVEDEDYELRHERVAGIDIAKAKADVCTRLPPQRDGGRRAS
Ga0099829_1055239023300009038Vadose Zone SoilVGHARARKIPAQLVEDEEYQLRHERVAGIDIAKAKADVCTRLPPQRDGGRRASRVEEVPATAKLKF*
Ga0105237_1139230823300009545Corn RhizosphereVAGSAGKKKTAAQLVEDEEYQLRHERVAGIGIGKAKADVCTRLPPARGGGRRASRVEEVPARAA
Ga0131853_1137212113300010162Termite GutVGNARKGKVPAKLVEDEEYQLRHERVAGIDVAKGKGDVCTRLPPAPGGARRRSRVEEVPARA
Ga0134125_1043419013300010371Terrestrial SoilMGNARARKIPARLIEDEHYRLRCERAAGTGIAKAKADVCTRLPPGRDGGRRTSRVEEVPAQARDILD
Ga0134128_1206092713300010373Terrestrial SoilVGSARARKIPARLVEDGDYQLRHERAAGIDIAKAKADVCTRLPPARDGGRRASRVEEVPATARDILAL
Ga0136449_10404357513300010379Peatlands SoilVGNARARKISARLVEDEDYQLRYERVAGIDVGKAKADVCTRLPAAREGGRRASRVEEVPA
Ga0126383_1091548723300010398Tropical Forest SoilVAHRKKKIPAQVVEDEEYQLRHERVAGIDIAKQKADVCTRLPAGRGGGRRRSRIEEVPATAAAITALAGRL
Ga0126361_1124974913300010876Boreal Forest SoilVAHRKKKIGAQMVEDEYQLRHERVAGIDVAKGKADVRTRLPPAREGGQRMSRPLPGRRRRGQA
Ga0126350_1001993513300010880Boreal Forest SoilVGNARARRIPARLVEDEDYQLRHERVAGIDIAKAKADVCTRLPPQREG
Ga0126350_1172007013300010880Boreal Forest SoilVSARRIPAQLLQDEDYQLRYERVAGIDVAKAKADVCTRLPPAQGGRRTSRVDEVGAT
Ga0137362_1158881013300012205Vadose Zone SoilVGNASARKIPAQLVEDEDYQLRYERVAGIDVAKAKADVCTRLPPAREGGRRG
Ga0137376_1054986613300012208Vadose Zone SoilMGNARARKIPAQLVEDEDYQLRHERVAGIDIAKAKADVCTRLPPQRDGG
Ga0134079_1053828713300014166Grasslands SoilMGRARARRIPAQLVEDEDYQLRHERVAGIDIAKAKADVCTRLPGARGRAAGVAG*
Ga0182013_1052417413300014492BogVAHRKKKIGAQLVEDEEYQLRYERVAGIDVAKGKADVCTRLPPAREGGRR
Ga0182041_1152340813300016294SoilVGNARARKVSAQLVEDEDYQLRYERVAGIDVARAKADVCTRLPPAREG
Ga0182033_1191554113300016319SoilVGRARARKVSAQLVEDEDYQLRYERVAGIDVAKAKADVCTRLPPAREGGRRASRVETVPA
Ga0187820_131921613300017924Freshwater SedimentVAHRKKIPAQLVEDEDYQLRHEKVAGIDIAKDKGDVCTRLPAAREGGRRRSRVEQDVPAR
Ga0187809_1028373713300017937Freshwater SedimentMGNARARKVPAELGEDEDYQLRYERVAGIEVAKAKADVFTRLPPAREG
Ga0187809_1034635813300017937Freshwater SedimentVAHRRKKIPAQLVEDEEYQLRHERVAGIDIAKAKADVCTRLPPKEGGARRRSRAEE
Ga0187808_1030697213300017942Freshwater SedimentVSHAKARKIPAQLVEDEEYQLRHDWTAGIDVAKASGVVCTRLPAAREGGRRRSRTE
Ga0187783_1135971913300017970Tropical PeatlandVGNARARKIPARLVEDEEYQLRHERVAGTGIAKAKADVCTRLPPAREGGRRLSRTEEVPATARDVLALAARLLAGG
Ga0187780_1086053113300017973Tropical PeatlandVGHARARKIPAQLVEDEDYQLRHERVAGIDIAKAKADVCTRLPPAREGG
Ga0187851_1080089513300018046PeatlandVGNARKGKIPAQLVEDEDYQLRHERVAGIDIAKAKADVCTRLPPLRDGGRRTSRVEEVPA
Ga0210403_1119269313300020580SoilMGHARARKVPAQLVEDEDYQLRYERVAGIDVAKAKADVCTRLPAAREG
Ga0179596_1004262813300021086Vadose Zone SoilMGRRQGKARLSAGLVEDEEYQLRHERVAGIDIAKASAVVCTRLPPVRDGGRRSW
Ga0210389_1114949013300021404SoilVGNARARKVPAQLVEDEDYQLRHERVDGIDIAKAKADVCTRLPPQRDGGRRA
Ga0210390_1148794213300021474SoilVGRARARGIPAQLVEDEEYQLRYEKVAGIDIAKAKGDVCTRLPPARGGGRRRSQVEEGPA
Ga0210398_1134418213300021477SoilVGHARARKIPAQLVEDEEYQLRHERVAGIDIAKAKADVCTRLPPDRDGG
Ga0126371_1319896013300021560Tropical Forest SoilVGRARARKISAQLVEDEDYQLRYERVAGIDVAKAKADVCTRLPPAREGGRRTSRVEEVPAAAAAILAL
Ga0207692_1115572313300025898Corn, Switchgrass And Miscanthus RhizosphereVAHRKKKICAQLVEDEEYQPRYERVAGIDVAKGKADVCTRLPPARDGGRRVSRSE
Ga0207699_1014404033300025906Corn, Switchgrass And Miscanthus RhizosphereMGHARARRIPAQLVEDEDYQLRHERVAGIDIAKAKADVCTRLPPARD
Ga0207663_1119929613300025916Corn, Switchgrass And Miscanthus RhizosphereVAHRKKKIGAQLVEDEEYQLRYERVAGIDVAKGKADVCTRLPPARDGGRRVSRSEEVTATVT
Ga0207700_1139396113300025928Corn, Switchgrass And Miscanthus RhizosphereVGNARARKIPAQLVEDEDYQLRHERVAGIDVAKAKADVCTRLPPAREGGRRASRTEEV
Ga0207700_1183768813300025928Corn, Switchgrass And Miscanthus RhizosphereMGNARARKVPARLVEDEDYQLRHERVAGIDVAKAKADVCTRLPPAREGGRRASKVEEV
Ga0207664_1157347613300025929Agricultural SoilVGRARARKIPAQLVEDEEYQLRYERVAGIDIGKAKADVCTRLPAVRAGGR
Ga0207641_1208729813300026088Switchgrass RhizosphereMGNARARKIPAQLVEDEDYQLRHERVAGIDIAKAKADVCTRLPPARDGGRRASRLEEVPATAREIL
Ga0209890_1023345613300026291SoilVGHARARKIPAQLVEDEEYQLSHERVAGIDIAKAKADVCTRLPPQRDGGR
Ga0208240_102403723300027030Forest SoilMGHARARKVPARLVEDEDYQLRHERVAGIDVAKAKADVCTRLPPARAGGRRASR
Ga0209693_1036068413300027855SoilMGHARARKIPAQLVEDEDYQLRHERVAGIDIAKAKADVCTRLPPARDGGRRASRL
Ga0302228_1046789713300028808PalsaVAHRKKKIGAQLVEDEEYQLRYERVAGIDVAKGKADVCTRLPPAREGGRRVSRTEEVAA
Ga0302218_1008895713300028863PalsaVAHRKKKIGAQLVEDEEYQLRYERVAGIDVAKGKADVCTRLPPAREGGRRV
Ga0311352_1100861413300029944PalsaMAHRKKKIPAQLVEDEEYQLRHERVAGIDIAKDKGDVSVRLPPAREGGRRRSRVEESVPARSRDILELGARLLAD
Ga0311371_1009249083300029951PalsaVGHARGRKIPAALVEDEDYQLRHERVAGIDVAKAKADVCTRLPPGRPGGRRRSRTEEFPATVAGVQDLAGRLLAD
Ga0311371_1068182733300029951PalsaVAHRKGKIPAQLVEDEEYQLRHERVAGIDIAKAKGDVCTRLPPAREGGRRGSRVEEAVPARARDILALG
Ga0311342_1104745813300029955BogVAHRKKKIGAQLVEDEEYQLRYERVAGIDVAKGKADVCTRLPPAREGGRRVSRTEEVAATVT
Ga0302190_1042559413300029988BogVAHRKKKIGAQLVEDEEYQLRYERVAGIDVAKGKADVCTRLPPAREGGRRVSRTEEVA
Ga0311339_1191111913300029999PalsaVGHARARKISAQLVEDEEYQLRHERVAGIDIAKAKADVCTRLPPACEGG
Ga0311338_1016981313300030007PalsaVGHARARKIPAQLVEDEDYQLRYERVAGIDVAKAKADVCTRLPPQHGVRAAGVAGG
Ga0311356_1150075613300030617PalsaVGHARARKIPAQLVEDEEYQLRHERVAGIDIAKAKADVCTRMPPQRGGGRRASRVE
Ga0302314_1194752213300030906PalsaVGHARKGKIPAQLVEDEDYQLRHERVAGIDVAKAKADVCTRLPPAGEG
Ga0318516_1059421213300031543SoilMGHARARKIPAQLVEDEEYQLGYERVAGIDIAKAKADVCTGLPPARDGGRRASRA
Ga0318555_1003473423300031640SoilMGHARARKIPAQLVEDEEYQLGYERVAGIDIAKAKADVCTGLPPARDGG
Ga0310686_11009936113300031708SoilMGNARARKIPAQLIEDEHYQLRHERVAGIDVAKAKADVCTRLPPQRDGGRRASRVEEVPARAREIADLAAR
Ga0307476_1083620113300031715Hardwood Forest SoilVGNARARKIPAQLVEDEDYQLRHERVAGIDIAKAKADVCTRLPPARDGGRRASRLEEVPATA
Ga0318501_1013167013300031736SoilMGHARARKIPAQLVEDEEYQLGYERVAGIDIAKAKADVCTGLPPARDGGRR
Ga0318494_1025188213300031751SoilMGHARARKIPAQLVEDEEYQLGYERVAGIDIAKAKADVCTRLPPARDGGRRASRLQEV
Ga0318543_1037055713300031777SoilMGHARARKVPAQLVEDEDYQLRYERVAGIDVAKAKADVCTRLPPAREGGRRASRVE
Ga0318568_1036201623300031819SoilVGHARARKIPAQLVEDEEYQLRHERVAGIDVAKAKADVCTRLPPARPGGR
Ga0310917_1097757913300031833SoilVGRARARKISAQLVEDEDYQLRYERVAGIDVAKAKADVCTRLPPAREGGR
Ga0318536_1032739713300031893SoilMGHARARKVPAQLVEDEDYQLRYERVAGIDVAKAKADVCTRLPPAREGGRRA
Ga0306923_1169813313300031910SoilVGHRKGRIPARLVEDEEYQLRHERVAGIDVAKGKADVCTRLPPAREGGRRVSRTEEVTAT
Ga0306921_1173361413300031912SoilLGHARARKIPAQLVEDEDYQLRHERVAGIDVAKAKADVCTRLPPGREGGRRASRL
Ga0310912_1112578413300031941SoilVAHRKKKIGAQLVEDEEYQLRYERVAGIDVAKGKADVCTRLPPARDGGRRVSRTEEVAATVTTILA
Ga0310909_1118142513300031947SoilVGHARARKVPAQLVEDEEYQLRYERVAGIDVAKAKADVCTRLPPAQQGARRASRLE
Ga0310909_1146838513300031947SoilVGHRKGRIPARLVEDEEYQLRHERVAGIDVAKGKADVCTRLPPAREGGR
Ga0306922_1104737523300032001SoilMGHARARKVPAQLVEDEDYQLRYERVAGIDVAKAKADVCTRLPPAREGGRRAARVETVTATAR
Ga0307416_10174562023300032002RhizosphereMGRARARRIPARTVEDEEYQLTHERTCGIDIAKDKADVCVRLPPAREGGRRTSRIEA
Ga0318562_1018518213300032008SoilMGHARARKIPAQLVEDEEYQLGYERVAGIDIAKAKADVCTGLPPARDGGRRASRAEEVPA
Ga0318533_1003655723300032059SoilMGHARARKIPAQLVEDEEYQLGYERVAGIDIAKAKADVCTRLPPARDGGRRASRAEEVPATAREILAL
Ga0318577_1020604913300032091SoilMGHARARKVPAQLVEDEDYQLRYERVAGIDVAKAKADVCTRLPPAREGGRR
Ga0311301_1240440313300032160Peatlands SoilMGNARARKVPAQLVEDEDYQLRHERVAGIDIAKAKADVCTRLPPQRDGGRRASRVEEVPARAR
Ga0306920_10272122413300032261SoilLGHARARKIPAQLVEDEDYQLRHERVAGIDVAKAKADVCTRLPPGVEGGRRASRLEEVPA
Ga0335085_1223882913300032770SoilVGHARARRIPAQLVEDEDYQLRHERVAGIDIAKAKADVCTRLPPQREDGRRASQLMARAARVTAQ
Ga0335083_1067517413300032954SoilVGHARARKIPAQLAGDEEYQLRHERVAGIDIAKAKADVCTRLPPAREGGRRASRVEEVPAEARAIL
Ga0335083_1135382713300032954SoilVGRARARRIPAQLVQDEEYQLRHERVAGIDIGKDKADVCTRLPAARPGGRRASRSWPG
Ga0335076_1025420933300032955SoilMGNARARKVAAQLVEDEDYQLRYERVAGIDVAKAKADVCTRLPPAREGGRRAS
Ga0335073_1059471113300033134SoilMGRARARRIPAKVVEDEDYQLRHERTCGIDIAKDKADIAVRLPPEREGGRRRTRTW
Ga0335077_1008503253300033158SoilVGHARARRIPAQLVEDEDYQLRHERVAGIDIAKAKADVCTRLPPQREDGRRASQLMARAARVT


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.