NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F106055

Metagenome / Metatranscriptome Family F106055

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F106055
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 55 residues
Representative Sequence MAAVTAGHTVLAPNTELAAALFDAVERAYRDAGRDVWPTPRVRDFGSW
Number of Associated Samples 81
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 0.00 %
% of genes from short scaffolds (< 2000 bps) 0.00 %
Associated GOLD sequencing projects 75
AlphaFold2 3D model prediction Yes
3D model pTM-score0.62

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (100.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(20.000 % of family members)
Environment Ontology (ENVO) Unclassified
(33.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(61.000 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 27.63%    β-sheet: 0.00%    Coil/Unstructured: 72.37%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.62
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF00155Aminotran_1_2 76.00
PF08352oligo_HPY 5.00
PF09339HTH_IclR 1.00
PF00005ABC_tran 1.00
PF13579Glyco_trans_4_4 1.00



 ⦗Top⦘

Phylogeny

NCBI Taxonomy

NameRankTaxonomyDistribution
UnclassifiedrootN/A100.00 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil20.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil10.00%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil9.00%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil8.00%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil7.00%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil6.00%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog4.00%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa4.00%
BogEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Bog4.00%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil3.00%
RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere3.00%
Iron-Sulfur Acid SpringEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring2.00%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds2.00%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil2.00%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil2.00%
Host-AssociatedHost-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated2.00%
Boreal Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil2.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.00%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil1.00%
Glacier Forefield SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil1.00%
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil1.00%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil1.00%
Bog Forest SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil1.00%
BogEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Bog1.00%
Prmafrost SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil1.00%
Peat SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil1.00%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.00%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001166Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O2EnvironmentalOpen in IMG/M
3300001546Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1EnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300004082Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3EnvironmentalOpen in IMG/M
3300004092Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300004152Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3EnvironmentalOpen in IMG/M
3300005602Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2EnvironmentalOpen in IMG/M
3300005610Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3EnvironmentalOpen in IMG/M
3300005712Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4EnvironmentalOpen in IMG/M
3300005921Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6EnvironmentalOpen in IMG/M
3300005993Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046EnvironmentalOpen in IMG/M
3300006059Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012EnvironmentalOpen in IMG/M
3300009500Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MGHost-AssociatedOpen in IMG/M
3300009698Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaGEnvironmentalOpen in IMG/M
3300010343Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1EnvironmentalOpen in IMG/M
3300010371Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1EnvironmentalOpen in IMG/M
3300010877Boreal forest soil eukaryotic communities from Alaska, USA - W3-2 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300010880Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300011270Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaGEnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012363Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaGEnvironmentalOpen in IMG/M
3300012924Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300014165Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaGEnvironmentalOpen in IMG/M
3300014201Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaGEnvironmentalOpen in IMG/M
3300014654Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaGEnvironmentalOpen in IMG/M
3300014658Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_10_metaGEnvironmentalOpen in IMG/M
3300014969Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaGHost-AssociatedOpen in IMG/M
3300015078Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-11a, vegetated hydrological feature)EnvironmentalOpen in IMG/M
3300019787Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (PacBio error correction)EnvironmentalOpen in IMG/M
3300020021Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1EnvironmentalOpen in IMG/M
3300020034Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1c2EnvironmentalOpen in IMG/M
3300020199Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300020580Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-MEnvironmentalOpen in IMG/M
3300020581Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-MEnvironmentalOpen in IMG/M
3300021086Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300021168Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-MEnvironmentalOpen in IMG/M
3300021180Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-OEnvironmentalOpen in IMG/M
3300021403Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-OEnvironmentalOpen in IMG/M
3300021405Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-OEnvironmentalOpen in IMG/M
3300021406Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-OEnvironmentalOpen in IMG/M
3300021420Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-MEnvironmentalOpen in IMG/M
3300021479Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-MEnvironmentalOpen in IMG/M
3300022532Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022557Paint Pots_combined assemblyEnvironmentalOpen in IMG/M
3300022726Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300024275Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK15EnvironmentalOpen in IMG/M
3300025504Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-1 shallow-072012 (SPAdes)EnvironmentalOpen in IMG/M
3300026285Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026319Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)EnvironmentalOpen in IMG/M
3300026320Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300027439Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027629Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027783Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)EnvironmentalOpen in IMG/M
3300027795Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)EnvironmentalOpen in IMG/M
3300027855Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)EnvironmentalOpen in IMG/M
3300027879Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)EnvironmentalOpen in IMG/M
3300027889Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)EnvironmentalOpen in IMG/M
3300027894Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)EnvironmentalOpen in IMG/M
3300028017Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE4Host-AssociatedOpen in IMG/M
3300028562Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N1_3EnvironmentalOpen in IMG/M
3300028775Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_2EnvironmentalOpen in IMG/M
3300029903Soil microbial communities from Marcell Experimental Forest, Minnesota, USA - Fen703EnvironmentalOpen in IMG/M
3300029910III_Palsa_E2 coassemblyEnvironmentalOpen in IMG/M
3300029945I_Bog_N2 coassemblyEnvironmentalOpen in IMG/M
3300029955II_Bog_E2 coassemblyEnvironmentalOpen in IMG/M
3300030494Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)EnvironmentalOpen in IMG/M
3300030503III_Palsa_E3 coassemblyEnvironmentalOpen in IMG/M
3300030677Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N3_3EnvironmentalOpen in IMG/M
3300030879Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030940Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSI1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030998Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-3A (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300031018Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE5 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031057Oak Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031241Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaGHost-AssociatedOpen in IMG/M
3300031247Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaGHost-AssociatedOpen in IMG/M
3300031474Fir Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031524Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031820Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515EnvironmentalOpen in IMG/M
3300033402Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MNEnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12694J13545_100550623300001166Forest SoilVERVSPALLAAVAAGRIVLAPNTELANALFDAVQRVHRDAGHAVWPTPRVHDYSSWLRERHVERQLS
JGI12659J15293_1005111513300001546Forest SoilVERVSPALLAAVAAGRIVLAPNTELANALFDAVQRVHRDAGHAVWPTPRVHDYSSWLRERHVERQLSEAVAPRLLS
JGIcombinedJ26739_10030541823300002245Forest SoilMAAVTAGHTILAPNTELAAALFDAVERAHRDAGRDVWPTPRVR
JGIcombinedJ26739_10045746213300002245Forest SoilMAAVAEGHTVLAPNAELAAALFDAVERSHQDAGLDLWPTPRVRDFGGWLRETHVNRQLTDAA
Ga0062384_10093222113300004082Bog Forest SoilLLAAVAAGHTVVTPNTELANALFDAVERSHRDAGHEVWPTPRVLD
Ga0062384_10109531623300004082Bog Forest SoilLLAAHAAGHTILTPNAELAAALFDALERVQTQAGRHVWATPRVRDFGSWIRELH
Ga0062389_10254284723300004092Bog Forest SoilMAAVADGHTILAPNTELAAALFDAVERTYLNSGLEVWPTPRVRDFGGWLREQHAARQLQD
Ga0062389_10353753413300004092Bog Forest SoilLASALLASAASGRTILAPNAELSAGLFDAIERAHREAGHEIWATPRVYDIASWLRDQHAQRQLKGFDSPR
Ga0062386_10162397313300004152Bog Forest SoilLTALAAGTTVLTPTAELAAILFDSVERSRRDAGITVWPTPRIRDFSSWLREQHLRRQSTD
Ga0070762_1048783023300005602SoilMAAVTEGDTILAPNTELAAALFDAVERTHLEAGREVWATPRVRDFGSWLRDQ
Ga0070762_1083850523300005602SoilVSFRAQRVSPGLLAAVAAGHTVLTPNTELAVAVFDAIERAHRAAGRDIWPTPRVQDFA
Ga0070763_1056220823300005610SoilVERVSPALLAAVAAGRTVLAPNTELANALFDAVQRVHRDAGHEVWPTPRVHDYSSWLRERHVE
Ga0070764_1008358033300005712SoilMAEAAQGHTILAPNTELAAALFDAVERAHQDAGREVWPTPRVRD
Ga0070766_1096949423300005921SoilVRVSPALLAAVAAGRTVLAPNTELANALFDAVQRVHRDAGDEVWPTP
Ga0080027_1040178213300005993Prmafrost SoilMAAVAAGHTVLTPNTELAAALFDAIERTYQESGREIWPTPRVRDFGGWLREGYA
Ga0075017_10087881413300006059WatershedsMTAVGAGHSVLAPNRELAAALFDAVERTHLGAGRDVWPTPRVLDFG
Ga0116229_1021267423300009500Host-AssociatedMAAALAGHTVLAPNQELATLAFEALERAYRAAGREVWPTPQIREFGSWQRDQHA
Ga0116229_1128678513300009500Host-AssociatedVARVLLEAVAAARTILTPNAELAAALSAAVERAYVRAGREIWPTPQIHDFGSWLRQQYVRRQFV
Ga0116216_1080063413300009698Peatlands SoilVVSALIAAADAGQTILTPNTELAAALFDAIERAQRTAGRDVWATPRVRDFGGWLQERHVK
Ga0074044_1036998113300010343Bog Forest SoilVLAPTAELAAALFDCVERGRRGAGLQVWPTPRIRDFSSWLREQHL
Ga0134125_1029145333300010371Terrestrial SoilMAAAADGRTILAPNTELAAALFDAVERAHLRAGRDLWPTPRVRDFGAWLREQHLLR
Ga0126356_1111647513300010877Boreal Forest SoilMAAVTAGHTVLAPNTELAAALFDAVERTHLETGREVWSTPRILDFGSWLREQHARRQLRD
Ga0126350_1011600413300010880Boreal Forest SoilVRISPSLLDAAESDQTILAPNAELAAALFDAIERAQQQAGRELWPTPKVR
Ga0137391_1050309913300011270Vadose Zone SoilVAGLMAAVTAGHTILAPNTELAAALFDAVERAHRDAGRDVWPTP
Ga0137391_1139662523300011270Vadose Zone SoilMTAVTAGHTVLAPNTELAAALFDAVERAYRNAGRDVWPTPRVRDFGSWLREKHVGRQLTD
Ga0137363_1153115223300012202Vadose Zone SoilVSAESDVSGLMGAVTDGHTVLAPNTELAAALFDAVERAYRDAGRDVWPTPRVRD
Ga0137390_1159343813300012363Vadose Zone SoilVAGLMAAATAGHTILAPNTELAAALFDAVERAHRDAGREVWPTPRVRDFGS
Ga0137413_1048686923300012924Vadose Zone SoilLLAAAAAGRTVLVPNTELANALFDAVQRVHRDAGDEVWPTPRVHDYSSWLRE
Ga0137416_1140658913300012927Vadose Zone SoilVFGLMTAVTAGHTILAPNTELAAALFDAVERAHRDAGRDIWPTPRVRDFGGW
Ga0181523_1031245613300014165BogVASALIEAANAGRTVLVPNTELAAALFDAIERAHRDAGLDIWPTPRVRDFAA
Ga0181537_1049801313300014201BogMRHAARGLFDAVNAGHTVLAPNAELAAALFDVVERMHVAAGHGVWATPRVRDFDGW
Ga0181525_1002141463300014654BogMRHAARGLFDAVNAGHTVLAPNAELAAALFDVVERMHVAAGHGVWATPRVRDFDGWLRE
Ga0181519_1083487423300014658BogVASALIEAANAGRTVLVPNTELAAALFDAIERAHRDAGLDIWPTPRVRDF
Ga0157376_1114877423300014969Miscanthus RhizosphereMAAVAAGHTVLTPNTELAAALFDAAERMYQESGREIWPTPRVRDFGGWLREGY
Ga0167660_103625413300015078Glacier Forefield SoilVTGLMSAVAAGHTVLVPNTELAAALFDAIEREYLEAGREVWPTPRIRDFGSWLREMYAARQLS
Ga0182031_109447213300019787BogMSAVAAGHTVLAPNTELAAALFDAVERRHQDCGREVWLTPRV
Ga0193726_112813213300020021SoilMERVSPALLAAAAAGRTVLVPNMELANALFDAVQRVHRDAGDAVWPTPRVHDLSSWLREQHVQRQLSEAVA
Ga0193726_114492513300020021SoilMERVSPALLAAVAAGRTVLAPNTELANALFDAVQRAHRDAGDEVWPTPRVHDLSSWLREQHVQRQLSEAVA
Ga0193726_122958313300020021SoilVERVSPALLAAVAAGRTVLAPNTELANALFDAVQRVHRDAGDEVWPTPRVHDYSSWLREQHMQRQLA
Ga0193753_1014771123300020034SoilMERVSPALLAAAAAGRTVLVPNMELANALFDAVQRVHRDAGDVVWPTPRVHDLSSWLREQHVQRQLSEAVAA
Ga0193753_1016965323300020034SoilVERVSPALLAAVAAGRTVLAPNTELANALYDAVQRVHRDAGDEVWPTPRVHDYSSWLREQ
Ga0179592_1034795223300020199Vadose Zone SoilMAAVTAGHTILAPNTELAAALFDAVERAHRDAGRDIWPTPRVRDFGGWLREK
Ga0210403_1004670813300020580SoilMAAVAAGHTVLAPNTELAAALFDAVERAYRDAGRDVWPTP
Ga0210403_1101769213300020580SoilMAAVTAGHTILAPNTELASALFDAAERAHRDAGREVWPTPRVRDFGSWLREKHLARQFADAVSP
Ga0210399_1156964923300020581SoilMAAVTAGHTVLAPNTELAAALFDAVERAHLEAGLEV
Ga0179596_1022139013300021086Vadose Zone SoilVTDLLAAAVAGHTVLAPNTELAAALFDAVERAYRDAGRDVWPTPRVRDFGGWLR
Ga0210406_1025480523300021168SoilMAAVTGGHTVLAPNTELAAALFDAVERTHLEAGREVWPTPRV
Ga0210406_1053153713300021168SoilVERVSPALLAAVAAGRTVLAPNTELANALFDAVQRAHRDAGDAVWPTPRVHDYSSWLREQHGQRQLSEAVAPRLLSEVEEREL
Ga0210406_1054725113300021168SoilMTAVTAGHTVLAPNTELAAALFDAVERAYRDAGRDVWPTPRVRDFGSWLRE
Ga0210406_1115236613300021168SoilVDRVSPALLAAVAAGRTVLAPNTELANALFDAVQRAHRDAGDEVWPTPRVHDYSSWLREQYAQRQLVDA
Ga0210396_1081449323300021180SoilLLAAVAAGRTVLAPNAELAAALFDAVQRVQRDAGNEVWPTPRVHDYSSWLREQYGQRQLA
Ga0210397_1003153013300021403SoilMLRQAPSLPPALTAAAAAGRTILAPNAELSAAIFDALERAHRDAGDEIWPTPRVFDFSSW
Ga0210387_1111222523300021405SoilVVPGLLEAANAGRTILAPNTELAAALFDAIERAYRDSGRDLWPTPRVRDFGS
Ga0210387_1160807923300021405SoilMAAVTAGHTILAPNTELAAALFDAVERAHRDAGRDVWPTPR
Ga0210386_1072031713300021406SoilVRVSPALLAAVAAGRTVLAPNTELANALFDAVQRVHRDAGDEVWPTPQVHDYSSWLREQHVQRQLAHATAPRLL
Ga0210386_1140822113300021406SoilMAAVTAGHTILAPNTELAAALFDAVERAHRDAGRDVWPTPRVRDFGSWLREKHVGRQLSDAV
Ga0210394_1015871433300021420SoilMAAVADGHTILAPNTELSAALFDAVERRYLDSGLDVWPTPRVRDFGGWLREQHAAR
Ga0210410_1057422213300021479SoilMAAVTGGHTVLAPNTELAAALFDAVERTHLEAGRDVWPTPRVLDFGSWLREQ
Ga0210410_1105951113300021479SoilVERVSPALLAAVAAGRTVLAPNAELAAALFDAVQRAHRDAGDEVWPTPRVHDYSSWFREHYGQRQLADAIAPRLLSEVEERE
Ga0242655_1024484813300022532SoilMAAVTAGHTVLAPNTELAAALFDAVERAYRDAGRDVWPTPRVRDFGSW
Ga0212123_10018152103300022557Iron-Sulfur Acid SpringVTGLMTAVAAGHTVLAPNTELAAALFDAVERAYRDAG
Ga0212123_1057978013300022557Iron-Sulfur Acid SpringVAGLMAAVTAGHTILAPNTELAAGLFDAVERAHRDAGRDVWPTPRVRDFGSW
Ga0242654_1032963323300022726SoilMAAVAAGHTVLAPNTELAAALFDAVERAYRDAGRDVW
Ga0247674_102091923300024275SoilMAAVAAGHTVLTPNTELAAALFDAAERMYQESGREIWPTPR
Ga0208356_105344013300025504Arctic Peat SoilMAAVTAGHTVLAPNTELAAALFDAVERAHLEAGLEVWPT
Ga0209438_101672633300026285Grasslands SoilVTDLLAAVVAGHTVLAPNTELAAALFDAVERAYRDAGRDVWPTPRVRDFGGWLREKHVQRQL
Ga0209647_131234813300026319Grasslands SoilVTDLLAAVVAGHTVLAPNTELAAALFDAVERAYRDAGRDVWPTPRV
Ga0209131_109460013300026320Grasslands SoilVTDLLAAVVAGHTVLAPNTELAAALFDAVERAYRDAGRDVWPTPRVRDFGGW
Ga0209332_102363023300027439Forest SoilMAAVTAGHTILAPNTELASALFDAAERAHRDAGREVW
Ga0209422_102909423300027629Forest SoilMAAVTAGHTVLAPNTELAAALFDAVERTHLKAGRDVW
Ga0209448_1020661223300027783Bog Forest SoilVNRALFESAGAGQTILAPNTELAAALFDALERAHRDSGREVWPTPRVRDFGA
Ga0209139_1004360613300027795Bog Forest SoilMAAVAAGRTILAPNTELAAALFDAVERAQRDAGRDVWPTPRVRDFGSWLREQHTRRQLND
Ga0209693_1044386023300027855SoilVERVSPALLAAVAAGRTVLAPNTELANALFDAVQRVHRDAGHEVWPTPRVHDYSSWLRERHVQRQLSE
Ga0209169_1010096523300027879SoilMAEAAQGHTILAPNTELAAALFDAVERAHQDAGREVWPTPRVRDFGSWLREQH
Ga0209169_1052001113300027879SoilLLAAAAAGRSILAPNTELAAALFDAIERAHRDAGDEIWPTPLVRDFAGWLRDEYAERQLSNS
Ga0209380_1029081823300027889SoilVACVSPALLAAVAAGRTVLAPNTELATALFDAIERVHRDAGDEVWPTPRVRDYSSWLREQHVQRQLGDAVEPRLLTEVEE
Ga0209068_1025060423300027894WatershedsMTAVAAGHSVLAPNRELAAALFDAVERIHLEVGRDVWPTPRVLDFGSWLREQ
Ga0265356_103572113300028017RhizosphereMAAVADGHTILAPNTELAAALFDAVERTYLDSGLDLW
Ga0302151_1026774713300028562BogMAAIAAGHTILAPNTELAAAVFDAVERAYQADGREVWPTPRVRDFGSWLIEQHA
Ga0302231_1013495723300028775PalsaLLAALEAGETVLAPNKELADALIDAVDRRHRDAAEEIWPTPRVRDFSSWLR
Ga0247271_10916623300029903SoilVTGLMAAVAAGHTVLAPNAELAAALFDAVERAHQACG
Ga0311369_1146698123300029910PalsaLLAAVAAGHTILAPNVELAAAVFDAVEREFRCAGRDIWPTPHVRDFSSWLREQYAQRQLLGGKWLRCL
Ga0311330_1056116223300029945BogMTAVAAGHTILAPNTELAAALFDAVERSHQDAGRDVWPTPRVLDFGSWLRARHAERQLA
Ga0311342_1057450113300029955BogMTAVAAGHTILAPNTELAAALFDAVERSHQDAGRDVWPTPRVLDFGSWLRARHA
Ga0310037_1027023623300030494Peatlands SoilMEAANADFTILVPNAELAAALFDAIERAHRDSGRELWPTPRVLEFGSWLRERH
Ga0311370_1238494213300030503PalsaVERVSPALLAAVAAGRTVLAPNTELANALFDAVQRVHRDAGHEVWPTPRVHDYSSWLRERHVERQLSEAVAPRLLSEVEERELW
Ga0302317_1003529613300030677PalsaVASGLIEAADAGRTVLVPNIEIANALFDAIERAHRDSGRDIWPTPRVRDFGTWLKELYVQ
Ga0265765_106286023300030879SoilLLAAVAAGRTVLAPNTELADALFDAVQRVHRDAGDEVWPTPRVLDYSSWLREQHGQRELAHAIAPRLLSEVEERELWR
Ga0265740_105106913300030940SoilLLAAVAAGRTVLAPNTELADALFDAVQRVHRDAGDEVWPTPRVLDYSSWLREQHGQRELAHAIAPRL
Ga0073996_1107745423300030998SoilMAAVTAGHTILAPNTELAAALFDAVERAHQDAGRDVWPTPRVRDFGSWL
Ga0265773_100454823300031018SoilMAAVADGHTILAPNTELAAALFDATERTYLESGLDVWPTP
Ga0170834_10906642523300031057Forest SoilVERVSPALLAAAAAGRTVLAPNTELANALFDAVQRVHRDAGDEVWPTPRVHDYSSWLREQYGE
Ga0265325_1034832523300031241RhizosphereMAASGGRTLLAPSAELAAALFDAIERGHRDSGRTVWPTPRVREFSSWLKEHYSARRLLDA
Ga0265340_1027672113300031247RhizosphereMAAVSAGHTVLAPNTELAAALFDAVERTYQDAGRDVWPTPRVRDFGS
Ga0170818_11275467423300031474Forest SoilVRIPPELSAALAAGRTVLAPNTELAAAIFDAAEREQRALGLALWVTPRVRDFG
Ga0302320_1015513913300031524BogMTAVAAGHTILAPNTELAAALFDAVERSHQDAGRDVWPTPRVLDFGSWLRARHAERQLAVAR
Ga0310686_10967831823300031708SoilVARVSPALLAAVAAGRTVLAPNTELAAALFDAVERAHRDAGDEIWPTPRVRDFSSWLREQHAERQ
Ga0310686_11239759313300031708SoilVSGLMTAVAAGHTVLAPNTELATALFDAVERAHQDAGREVWPTPRI
Ga0307473_1145529213300031820Hardwood Forest SoilMTAVTAGHTVLAPNTELAAALFDAVERAYRDAGRDVWPTPRVRDFGSWL
Ga0326728_1089209823300033402Peat SoilMAAVTAGHTVLAPNTELAAALFDAVERAHLQAGRDVWPTPRVRDFGGWL


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.