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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F106035 |
| Family Type | Metagenome |
| Number of Sequences | 100 |
| Average Sequence Length | 62 residues |
| Representative Sequence | MDPAKVAQMVEVLNGLSARDALCLLVGCMLTVLDEAPSDEERQQSLDNCIDLLKGLPVGSTH |
| Number of Associated Samples | 48 |
| Number of Associated Scaffolds | 100 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | No |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 67.00 % |
| % of genes near scaffold ends (potentially truncated) | 21.00 % |
| % of genes from short scaffolds (< 2000 bps) | 94.00 % |
| Associated GOLD sequencing projects | 41 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.58 |
| Hidden Markov Model |
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| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (65.000 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (35.000 % of family members) |
| Environment Ontology (ENVO) | Unclassified (39.000 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (89.000 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 50.00% β-sheet: 0.00% Coil/Unstructured: 50.00% | Feature Viewer |
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| Powered by Feature Viewer | |||||
| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.58 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 100 Family Scaffolds |
|---|---|---|
| PF04392 | ABC_sub_bind | 5.00 |
| PF07040 | DUF1326 | 2.00 |
| PF00805 | Pentapeptide | 1.00 |
| PF13676 | TIR_2 | 1.00 |
| PF07183 | DUF1403 | 1.00 |
| PF01609 | DDE_Tnp_1 | 1.00 |
| PF04986 | Y2_Tnp | 1.00 |
| PF14559 | TPR_19 | 1.00 |
| PF08327 | AHSA1 | 1.00 |
| PF13358 | DDE_3 | 1.00 |
| PF00536 | SAM_1 | 1.00 |
| PF10088 | DUF2326 | 1.00 |
| PF01042 | Ribonuc_L-PSP | 1.00 |
| PF00685 | Sulfotransfer_1 | 1.00 |
| COG ID | Name | Functional Category | % Frequency in 100 Family Scaffolds |
|---|---|---|---|
| COG2984 | ABC-type uncharacterized transport system, periplasmic component | General function prediction only [R] | 5.00 |
| COG5588 | Uncharacterized conserved protein, DUF1326 domain | Function unknown [S] | 2.00 |
| COG0251 | Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family | Defense mechanisms [V] | 1.00 |
| COG1357 | Uncharacterized conserved protein YjbI, contains pentapeptide repeats | Function unknown [S] | 1.00 |
| COG3039 | Transposase and inactivated derivatives, IS5 family | Mobilome: prophages, transposons [X] | 1.00 |
| COG3293 | Transposase | Mobilome: prophages, transposons [X] | 1.00 |
| COG3385 | IS4 transposase InsG | Mobilome: prophages, transposons [X] | 1.00 |
| COG5421 | Transposase | Mobilome: prophages, transposons [X] | 1.00 |
| COG5433 | Predicted transposase YbfD/YdcC associated with H repeats | Mobilome: prophages, transposons [X] | 1.00 |
| COG5659 | SRSO17 transposase | Mobilome: prophages, transposons [X] | 1.00 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 65.00 % |
| All Organisms | root | All Organisms | 35.00 % |
| Visualization |
|---|
| Powered by ApexCharts |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| 3300001867|JGI12627J18819_10388997 | Not Available | 566 | Open in IMG/M |
| 3300005332|Ga0066388_100330537 | All Organisms → cellular organisms → Bacteria | 2170 | Open in IMG/M |
| 3300005332|Ga0066388_104939411 | Not Available | 678 | Open in IMG/M |
| 3300005764|Ga0066903_103924858 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 798 | Open in IMG/M |
| 3300005764|Ga0066903_106225686 | Not Available | 624 | Open in IMG/M |
| 3300009792|Ga0126374_11593567 | Not Available | 539 | Open in IMG/M |
| 3300010043|Ga0126380_10829227 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 760 | Open in IMG/M |
| 3300010047|Ga0126382_12341337 | Not Available | 517 | Open in IMG/M |
| 3300010048|Ga0126373_10614610 | All Organisms → cellular organisms → Bacteria | 1140 | Open in IMG/M |
| 3300010048|Ga0126373_10615886 | Not Available | 1139 | Open in IMG/M |
| 3300010048|Ga0126373_11854213 | Not Available | 666 | Open in IMG/M |
| 3300010048|Ga0126373_11934900 | Not Available | 652 | Open in IMG/M |
| 3300010048|Ga0126373_12587808 | Not Available | 566 | Open in IMG/M |
| 3300010048|Ga0126373_12991718 | Not Available | 527 | Open in IMG/M |
| 3300010358|Ga0126370_10368936 | Not Available | 1167 | Open in IMG/M |
| 3300010359|Ga0126376_11472800 | Not Available | 708 | Open in IMG/M |
| 3300010360|Ga0126372_12951929 | Not Available | 527 | Open in IMG/M |
| 3300010361|Ga0126378_10593604 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 1222 | Open in IMG/M |
| 3300010361|Ga0126378_11886914 | Not Available | 680 | Open in IMG/M |
| 3300010366|Ga0126379_12070482 | Not Available | 671 | Open in IMG/M |
| 3300010376|Ga0126381_100224283 | Not Available | 2529 | Open in IMG/M |
| 3300010376|Ga0126381_100900306 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium | 1273 | Open in IMG/M |
| 3300010376|Ga0126381_101149714 | Not Available | 1121 | Open in IMG/M |
| 3300010376|Ga0126381_101193284 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | 1100 | Open in IMG/M |
| 3300010376|Ga0126381_101377283 | Not Available | 1020 | Open in IMG/M |
| 3300010376|Ga0126381_102650803 | Not Available | 717 | Open in IMG/M |
| 3300010376|Ga0126381_104434163 | Not Available | 542 | Open in IMG/M |
| 3300010398|Ga0126383_10426349 | All Organisms → cellular organisms → Bacteria | 1370 | Open in IMG/M |
| 3300010398|Ga0126383_11565258 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 749 | Open in IMG/M |
| 3300010398|Ga0126383_11567284 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 748 | Open in IMG/M |
| 3300010398|Ga0126383_11781754 | All Organisms → cellular organisms → Bacteria | 704 | Open in IMG/M |
| 3300010937|Ga0137776_1332961 | Not Available | 613 | Open in IMG/M |
| 3300010937|Ga0137776_1455429 | Not Available | 576 | Open in IMG/M |
| 3300012971|Ga0126369_12069953 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 657 | Open in IMG/M |
| 3300012971|Ga0126369_13065119 | Not Available | 547 | Open in IMG/M |
| 3300016270|Ga0182036_11094640 | Not Available | 660 | Open in IMG/M |
| 3300016319|Ga0182033_10653176 | Not Available | 918 | Open in IMG/M |
| 3300016319|Ga0182033_10884665 | Not Available | 790 | Open in IMG/M |
| 3300016341|Ga0182035_10056432 | All Organisms → cellular organisms → Bacteria | 2693 | Open in IMG/M |
| 3300016341|Ga0182035_10342003 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium BRH_c36 | 1240 | Open in IMG/M |
| 3300016341|Ga0182035_11025595 | Not Available | 732 | Open in IMG/M |
| 3300016357|Ga0182032_10493046 | Not Available | 1006 | Open in IMG/M |
| 3300016371|Ga0182034_10156970 | All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium | 1716 | Open in IMG/M |
| 3300016371|Ga0182034_10253919 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 1388 | Open in IMG/M |
| 3300016371|Ga0182034_10916182 | All Organisms → cellular organisms → Bacteria | 754 | Open in IMG/M |
| 3300016387|Ga0182040_10045496 | Not Available | 2692 | Open in IMG/M |
| 3300016404|Ga0182037_11506734 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 597 | Open in IMG/M |
| 3300016422|Ga0182039_11009310 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium | 747 | Open in IMG/M |
| 3300016422|Ga0182039_11225671 | Not Available | 678 | Open in IMG/M |
| 3300017970|Ga0187783_10016761 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium | 5410 | Open in IMG/M |
| 3300017970|Ga0187783_10066925 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 2646 | Open in IMG/M |
| 3300017970|Ga0187783_10346696 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii | 1081 | Open in IMG/M |
| 3300017970|Ga0187783_10516950 | Not Available | 865 | Open in IMG/M |
| 3300017970|Ga0187783_10546719 | All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium | 839 | Open in IMG/M |
| 3300017970|Ga0187783_10673047 | Not Available | 747 | Open in IMG/M |
| 3300017970|Ga0187783_10741344 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 709 | Open in IMG/M |
| 3300017970|Ga0187783_11048006 | Not Available | 587 | Open in IMG/M |
| 3300017970|Ga0187783_11098953 | Not Available | 573 | Open in IMG/M |
| 3300017970|Ga0187783_11148183 | Not Available | 559 | Open in IMG/M |
| 3300017970|Ga0187783_11393696 | Not Available | 505 | Open in IMG/M |
| 3300017974|Ga0187777_11430593 | Not Available | 511 | Open in IMG/M |
| 3300017975|Ga0187782_10357035 | Not Available | 1107 | Open in IMG/M |
| 3300017975|Ga0187782_10569263 | Not Available | 869 | Open in IMG/M |
| 3300017975|Ga0187782_11347087 | Not Available | 560 | Open in IMG/M |
| 3300018058|Ga0187766_10528966 | Not Available | 797 | Open in IMG/M |
| 3300018060|Ga0187765_10272085 | Not Available | 1006 | Open in IMG/M |
| 3300018060|Ga0187765_10474985 | Not Available | 786 | Open in IMG/M |
| 3300018060|Ga0187765_10710932 | Not Available | 661 | Open in IMG/M |
| 3300018060|Ga0187765_11025640 | Not Available | 567 | Open in IMG/M |
| 3300018085|Ga0187772_10560134 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 810 | Open in IMG/M |
| 3300021560|Ga0126371_10259861 | All Organisms → cellular organisms → Bacteria | 1853 | Open in IMG/M |
| 3300021560|Ga0126371_10341767 | Not Available | 1630 | Open in IMG/M |
| 3300021560|Ga0126371_11579212 | Not Available | 783 | Open in IMG/M |
| 3300021560|Ga0126371_11873926 | All Organisms → cellular organisms → Bacteria | 719 | Open in IMG/M |
| 3300021560|Ga0126371_11977403 | Not Available | 701 | Open in IMG/M |
| 3300021560|Ga0126371_13147881 | Not Available | 558 | Open in IMG/M |
| 3300021560|Ga0126371_13391657 | Not Available | 538 | Open in IMG/M |
| 3300031545|Ga0318541_10581468 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. JYMT SZCCT0428 | 627 | Open in IMG/M |
| 3300031679|Ga0318561_10496775 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium | 672 | Open in IMG/M |
| 3300031719|Ga0306917_11250712 | Not Available | 575 | Open in IMG/M |
| 3300031770|Ga0318521_10992571 | Not Available | 515 | Open in IMG/M |
| 3300031781|Ga0318547_10798957 | All Organisms → cellular organisms → Bacteria | 588 | Open in IMG/M |
| 3300031833|Ga0310917_10702543 | All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium | 685 | Open in IMG/M |
| 3300031879|Ga0306919_11068429 | Not Available | 616 | Open in IMG/M |
| 3300031890|Ga0306925_10878970 | Not Available | 924 | Open in IMG/M |
| 3300031890|Ga0306925_11127874 | Not Available | 791 | Open in IMG/M |
| 3300031912|Ga0306921_11281275 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium | 812 | Open in IMG/M |
| 3300031912|Ga0306921_12680401 | Not Available | 513 | Open in IMG/M |
| 3300031941|Ga0310912_10163482 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 1687 | Open in IMG/M |
| 3300031945|Ga0310913_10917348 | Not Available | 616 | Open in IMG/M |
| 3300031946|Ga0310910_11329681 | Not Available | 555 | Open in IMG/M |
| 3300031954|Ga0306926_10722274 | Not Available | 1207 | Open in IMG/M |
| 3300031954|Ga0306926_11582214 | Not Available | 753 | Open in IMG/M |
| 3300032001|Ga0306922_10476919 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | 1331 | Open in IMG/M |
| 3300032001|Ga0306922_10777196 | Not Available | 1003 | Open in IMG/M |
| 3300032001|Ga0306922_10962704 | All Organisms → cellular organisms → Bacteria | 883 | Open in IMG/M |
| 3300032025|Ga0318507_10389779 | Not Available | 607 | Open in IMG/M |
| 3300032076|Ga0306924_11559764 | Not Available | 698 | Open in IMG/M |
| 3300032076|Ga0306924_11781162 | Not Available | 643 | Open in IMG/M |
| 3300032261|Ga0306920_103504735 | Not Available | 580 | Open in IMG/M |
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| Habitat | Taxonomy | Distribution |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 35.00% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 28.00% |
| Tropical Peatland | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland | 21.00% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 9.00% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil | 4.00% |
| Sediment | Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment | 2.00% |
| Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil | 1.00% |
| Visualization |
|---|
| Powered by ApexCharts |
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300001867 | Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705) | Environmental | Open in IMG/M |
| 3300005332 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly) | Environmental | Open in IMG/M |
| 3300005764 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2) | Environmental | Open in IMG/M |
| 3300009792 | Tropical forest soil microbial communities from Panama - MetaG Plot_12 | Environmental | Open in IMG/M |
| 3300010043 | Tropical forest soil microbial communities from Panama - MetaG Plot_26 | Environmental | Open in IMG/M |
| 3300010047 | Tropical forest soil microbial communities from Panama - MetaG Plot_30 | Environmental | Open in IMG/M |
| 3300010048 | Tropical forest soil microbial communities from Panama - MetaG Plot_11 | Environmental | Open in IMG/M |
| 3300010358 | Tropical forest soil microbial communities from Panama - MetaG Plot_3 | Environmental | Open in IMG/M |
| 3300010359 | Tropical forest soil microbial communities from Panama - MetaG Plot_15 | Environmental | Open in IMG/M |
| 3300010360 | Tropical forest soil microbial communities from Panama - MetaG Plot_6 | Environmental | Open in IMG/M |
| 3300010361 | Tropical forest soil microbial communities from Panama - MetaG Plot_23 | Environmental | Open in IMG/M |
| 3300010366 | Tropical forest soil microbial communities from Panama - MetaG Plot_24 | Environmental | Open in IMG/M |
| 3300010376 | Tropical forest soil microbial communities from Panama - MetaG Plot_28 | Environmental | Open in IMG/M |
| 3300010398 | Tropical forest soil microbial communities from Panama - MetaG Plot_35 | Environmental | Open in IMG/M |
| 3300010937 | Fumarole sediment microbial communities, Furnas, Sao Miguel, Azores. Combined Assembly of Gp0156138, Gp0156139 | Environmental | Open in IMG/M |
| 3300012971 | Tropical forest soil microbial communities from Panama - MetaG Plot_1 | Environmental | Open in IMG/M |
| 3300016270 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 | Environmental | Open in IMG/M |
| 3300016319 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H | Environmental | Open in IMG/M |
| 3300016341 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 | Environmental | Open in IMG/M |
| 3300016357 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 | Environmental | Open in IMG/M |
| 3300016371 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 | Environmental | Open in IMG/M |
| 3300016387 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 | Environmental | Open in IMG/M |
| 3300016404 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 | Environmental | Open in IMG/M |
| 3300016422 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 | Environmental | Open in IMG/M |
| 3300017970 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG | Environmental | Open in IMG/M |
| 3300017974 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG | Environmental | Open in IMG/M |
| 3300017975 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG | Environmental | Open in IMG/M |
| 3300018058 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG | Environmental | Open in IMG/M |
| 3300018060 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG | Environmental | Open in IMG/M |
| 3300018085 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG | Environmental | Open in IMG/M |
| 3300021560 | Tropical forest soil microbial communities from Panama - MetaG Plot_4 | Environmental | Open in IMG/M |
| 3300031545 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26 | Environmental | Open in IMG/M |
| 3300031679 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23 | Environmental | Open in IMG/M |
| 3300031719 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2) | Environmental | Open in IMG/M |
| 3300031770 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17 | Environmental | Open in IMG/M |
| 3300031781 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20 | Environmental | Open in IMG/M |
| 3300031833 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178 | Environmental | Open in IMG/M |
| 3300031879 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2) | Environmental | Open in IMG/M |
| 3300031890 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2) | Environmental | Open in IMG/M |
| 3300031912 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2) | Environmental | Open in IMG/M |
| 3300031941 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080 | Environmental | Open in IMG/M |
| 3300031945 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082 | Environmental | Open in IMG/M |
| 3300031946 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172 | Environmental | Open in IMG/M |
| 3300031954 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2) | Environmental | Open in IMG/M |
| 3300032001 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2) | Environmental | Open in IMG/M |
| 3300032025 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20 | Environmental | Open in IMG/M |
| 3300032076 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2) | Environmental | Open in IMG/M |
| 3300032261 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2) | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
| ⦗Top⦘ |
| Protein ID | Sample Taxon ID | Habitat | Sequence |
| JGI12627J18819_103889972 | 3300001867 | Forest Soil | MDPTKVAQMVSVLNGLTARDALCLLVGCMLTVLDEAPSDEERQQSLDGCIDLLRCAPISSTTKDRTPR* |
| Ga0066388_1003305372 | 3300005332 | Tropical Forest Soil | MCPNSLGGCTIDPAKIAQMVEVLNALTARDALCLLVGCMLTVLDEAPSDEERQQSLDNCIDLLKGVPVRLKD* |
| Ga0066388_1049394112 | 3300005332 | Tropical Forest Soil | MDPAKVAQMVEVLNGLTARDALCMLVGCMLSVLDEAPSGEERQQSLDNCIDLLKGFPVVSTH* |
| Ga0066903_1039248581 | 3300005764 | Tropical Forest Soil | RLTARDALCLLVGCMLTVLDEAPSDEERQRSLDGCIDLLRCVPVGTKDRL* |
| Ga0066903_1062256862 | 3300005764 | Tropical Forest Soil | VCPNGCEGSRTDPAKIARMVEVLNGLTARDALCLLVGCMLTVLDEAPSDKERQQSLDNCIDLLKGVPVGLKD* |
| Ga0126374_115935671 | 3300009792 | Tropical Forest Soil | MDPAKVAQMVEVLNGLSARDALCLLVGCMLTVLDEAPSDEERQQSLDNCIDLLKGLPAGWTH* |
| Ga0126380_108292272 | 3300010043 | Tropical Forest Soil | MVEVLNGLTARDALCLLVGCMLTVLDEAPSDEERQQSLDGCIELLKRIPVGSTH* |
| Ga0126382_123413371 | 3300010047 | Tropical Forest Soil | MDPAKVTRMVEALNGLTARDALCLLVGCMPTVLEEAPSDEERQQSLDNCIDLLKGVPVGLRH* |
| Ga0126373_106146103 | 3300010048 | Tropical Forest Soil | MDQKKVAQMVVVLNGLTARDALCLLGGCMLTVVDQAPSDEERQQSLDGCIDLLKRILVGSPH* |
| Ga0126373_106158861 | 3300010048 | Tropical Forest Soil | ACMNGCWSRTMDPAKLAQMVNVLNGLTTRDALCMLVGWMLAVLDEAPSDEERQQSLDNCIDLLKGLPAGWTH* |
| Ga0126373_118542131 | 3300010048 | Tropical Forest Soil | MDPVKVAQMVEVLNGLTAREALCLLVGCTLTILDEAPSDEERQQSLDNCIDLLKGVPVGLKD* |
| Ga0126373_119349001 | 3300010048 | Tropical Forest Soil | MDQKKVAQMVEVLNELTARDALSPLVGCMLTVLDEAPSDKERRLSLDNCIDLLKGVLVGLIG* |
| Ga0126373_125878081 | 3300010048 | Tropical Forest Soil | MNGCGGRAMDPVKVAQMVELWNGLSARDALCLLVGCMLAVVDEAPSDEERQQSLDNCIDLLKGLSAGWTY* |
| Ga0126373_129917181 | 3300010048 | Tropical Forest Soil | MDPAKVAQMVEVLNGLSARDALCLLVGCMLTVLDEAPSDEERQQSLDNCINLLKSLSAGLQDSRRQEAKKESGR* |
| Ga0126370_103689361 | 3300010358 | Tropical Forest Soil | TMDPAKVAQMVNVLNGLTARDALCMLVGCMLAVLDETPSDEERQQSLDNCIDLLKDF* |
| Ga0126376_114728002 | 3300010359 | Tropical Forest Soil | MDPAKVRQIVEVLNGLTARDALCLLVGCIHTVLDQAPGDEQRQQSLDNCIDLLKGVRSV* |
| Ga0126372_129519291 | 3300010360 | Tropical Forest Soil | MNGCGGRAMDPVKVAQMVELLNGLSARDALCLLVGCMLTVLDEAPSDEERQQSLDNCIDLLNGDDG* |
| Ga0126378_105936042 | 3300010361 | Tropical Forest Soil | MDPTKVAQMVEVLNGLTARDALCLLVGCMLTVLDEAPSAEERQQSLDGCIDLLKRGPGPVGSY* |
| Ga0126378_118869142 | 3300010361 | Tropical Forest Soil | MFVSTVDPAKVTQTAETLNALTARDALCLLVGYMLTVSDEAPTDAEHEQSLDNCIDLLKGVPVGLKV* |
| Ga0126379_120704822 | 3300010366 | Tropical Forest Soil | WSRTMDPAKLAQMVNVLNGLTTRDALCMLVGCMLSVLDEAPSGEERQQSLDNCIDLLKGLSVGWTH* |
| Ga0126381_1002242831 | 3300010376 | Tropical Forest Soil | AAKVAQMVEVLNGLTARDALCLLVGFILTVLDEAPSDEERQQSLDDCIKLLK* |
| Ga0126381_1009003061 | 3300010376 | Tropical Forest Soil | MCPNSLGGCTIDPAKIAQMVEVLNALTARDALCLLVGCMLTVLDEAPSDEERQQSLDNCIDLLKGVPVCLKD* |
| Ga0126381_1011497141 | 3300010376 | Tropical Forest Soil | MNGCGGRAMDPVKVAQMVELLNGLSARDALCLLVGCMLTVLDEAPSDEERQQSLDNCIDLLKGLSVGWTH* |
| Ga0126381_1011932842 | 3300010376 | Tropical Forest Soil | MDPPKVRQIVEVLNGLTARDALCLLVGCVHSVLDQAPSDGERQQSLDNCIDLLKAVPVGLRH* |
| Ga0126381_1013772831 | 3300010376 | Tropical Forest Soil | QMVNVLNGLTARDALRMLVGCMLAVLDEAPSDEERQQSLDNCIDLLKGLPVGWTQ* |
| Ga0126381_1026508031 | 3300010376 | Tropical Forest Soil | MVEVLNGLTARDALCLLAGCMLTVLDEAPSDEERQQSLDNCIDLLKGVPVRLKD* |
| Ga0126381_1044341631 | 3300010376 | Tropical Forest Soil | MDPAKVAQMVKVLNGLTAHDALCLLVGCMLTVLDEAPSDEERQQSLDGCIELLKRIPVGSTH* |
| Ga0126383_104263491 | 3300010398 | Tropical Forest Soil | KVAEMIEVLNGLAARDALCLLVGCMLTVLDEAPSNDERQRSLDGCIDLLS* |
| Ga0126383_115652581 | 3300010398 | Tropical Forest Soil | MDPAKIARIVEVLNALTARDALCLLVGCMLTVLDEAPSDEERQQSLDNCIDLLKGVPVRLKD* |
| Ga0126383_115672841 | 3300010398 | Tropical Forest Soil | AVCPNGCEGSRTDPAKIARMVEVLNGLTARDALCLLVGCMLTVLDEAPSDKERQRSLDNCIDLLKGVPVGLKD* |
| Ga0126383_117817542 | 3300010398 | Tropical Forest Soil | VDPAKVAQMVEVLNGLTARDVVGCMLTVFDEAPSDEERQQSLDSCIDLLKGVPVGLKG* |
| Ga0137776_13329612 | 3300010937 | Sediment | MDPTKVAQMVEVLNEFTARDAFCLSVGCMLLVLDEAPSDEERQQSLDGCIDLLKRGPGPVGSY* |
| Ga0137776_14554291 | 3300010937 | Sediment | MDPAKVAQMVEVLNGLSARDGLCLLVGCMLTVLDEAPSDKERQQSLDNCIDLLKGVPVRLKD* |
| Ga0126369_120699532 | 3300012971 | Tropical Forest Soil | MDPAKVAQMVEVLNRLIARDALSLMVSCILTILDEAPSDWERQQSLDGCIDCFDALRTAYDP* |
| Ga0126369_130651192 | 3300012971 | Tropical Forest Soil | MDPAKVAQMVEVLNGLSARDALCLLVGCMLTVLDEAPSDEERQQSLDNCIDLLKGDDE* |
| Ga0182036_110946401 | 3300016270 | Soil | MNGCRSCTVDPTKVTQMVSVLNGLTVRDALCLLVGRMLTVLDEAPSDEERQQSLDSCIDLLRCTKDRL |
| Ga0182033_106531761 | 3300016319 | Soil | MDWAKVAQMVNVLNELTARDALCLSVGCMLTVLDEAPSDEERQQSLDGCIDLLKRIPVGSTH |
| Ga0182033_108846652 | 3300016319 | Soil | MDPAKVAQMVEVLNGLSARDALCLLVGCMLAVVDEAPSDEERQQSLDNCIDLLKGLSVGWTH |
| Ga0182035_100564324 | 3300016341 | Soil | MNGCWSRAMDRAKVAQMVNVLNELTARDALCLSVGCMLTVLDEAPSDEERQQSLDGCIELLKRIPVGSTH |
| Ga0182035_103420032 | 3300016341 | Soil | CGSRTMDPAKVAQMVNVLNGLTARDALCLLVGCMLTVLDEAPSDEERQQSLDSCIDLLRCTKDRL |
| Ga0182035_110255951 | 3300016341 | Soil | MDPAKVAQVVEVLNGLTARDALCLLVGCMLAVLDEAPSDEERQQSLDNYIALLKGVPVGLKDLGPLV |
| Ga0182032_104930462 | 3300016357 | Soil | MDPVKVAQMVELWNGLSARDALCLLVGCMLAVVDEAPSDEERQQSLDNCIDLLKGLPVGWTH |
| Ga0182034_101569702 | 3300016371 | Soil | MDPTKVAQMVEVLNGLSARDALCPLVGCMLTVLDEAPSDEDRQQSLDNCIDLLKGLPVGWAH |
| Ga0182034_102539192 | 3300016371 | Soil | MDPAKVAHMVEALNGLTARDVLCLLVGCMLTVLDEAPSDEERQQSLDGCIDLLKRGPGSVGSY |
| Ga0182034_109161821 | 3300016371 | Soil | MDSAKVAQMVNVLNGLSAHDALCLLVGCMLTVLDEAPSDEERQQSLDNCVNLLKTYWVDLKH |
| Ga0182040_100454961 | 3300016387 | Soil | MDPAKVAQMVEVLNGLSARDALCLLVGCMLTVLDEAPSDEERQQSLDGCIDLLKRGPGPVRSTY |
| Ga0182037_115067343 | 3300016404 | Soil | MDPAKVAQMVNVLNGLTARDALCMLVGCMLAVLDEAPSDEERQQSLDNCIDLLKGLSAGWTY |
| Ga0182039_110093101 | 3300016422 | Soil | NGCGSRTMDPAGVAQMVEVLNGLSARDALCLLVDCMLTILDEAPSDEERQQSLDNCIDLLKVFQSVRRTMGSDDSLVL |
| Ga0182039_112256712 | 3300016422 | Soil | MDPAKVAQMVNVLNGLTARDAFCMLVGCMLAVLDEASDEGRQGSLDNYIDLLKGLSVGWT |
| Ga0187783_100167615 | 3300017970 | Tropical Peatland | MDPAKVAQMVEVLNGLTARDALCLLVGCLLTVLDQAPSDEERQQSLNNCIDLLKRIPVDSTH |
| Ga0187783_100669254 | 3300017970 | Tropical Peatland | MDPAKVAQMVQVLNGLTARDALCLLVGCMLTVLDQAPSDKERQQSLDACIHLLKCAPVGPTLM |
| Ga0187783_103466963 | 3300017970 | Tropical Peatland | MDPAKVAQMVEVLNGLSARDALCLLVGSILTVLDEAPSDEERQQSLDNCIDRLKGVPVRLED |
| Ga0187783_105169502 | 3300017970 | Tropical Peatland | MDATKVVQIVSVLDGPTPRGAVCLLVGCMLTALDKAPSDEERQQSLDACIDLLRCTKERLCDP |
| Ga0187783_105467191 | 3300017970 | Tropical Peatland | MDPTKVAQMVSVLNGLTARDALCLLVGCMLTVLDEAPSDGERQQSLDACIDPLKRAPGDSTHLRPACEPP |
| Ga0187783_106730472 | 3300017970 | Tropical Peatland | MDPAKVAQMVEVLNGLSARDALCLLVGCMLTVLDEAPSDEERQQSLDNCIDLLKGLPVGSTH |
| Ga0187783_107413442 | 3300017970 | Tropical Peatland | MDQKKVTQMVEVLNGLTARDALCLLVGCMLTVLDEAPSEEERQQSLDRCLDLQKRVPIGSTH |
| Ga0187783_110480061 | 3300017970 | Tropical Peatland | MVEVLNGLTARDALCLLVDCMLTVLDEAPSDKERQQSLDSCIDQLKGVPVGLKG |
| Ga0187783_110989532 | 3300017970 | Tropical Peatland | RRHPAKVAQMVNVLNGLTARDALRLLVGCMLTVLDEAPSDEKRRQSLDGCIDLLKGVSPVRRAKDHL |
| Ga0187783_111481832 | 3300017970 | Tropical Peatland | MDQKKVAQMVELLNGLTARDALCLLVGCMLTVLDEAPSDEERQQSLDNCIEALKGAPIGSKH |
| Ga0187783_113936961 | 3300017970 | Tropical Peatland | MDQMKVTQVVEALNGLSARDALCLLVGCMLTVLDEAPSDEERQQPLDGCIDLLRASLTFF |
| Ga0187777_114305931 | 3300017974 | Tropical Peatland | MDPTKITQIVEVLNGLTARDALCLLVGCMLTVLGAAPSDEERQQSLDGCIGLIKRVPAGLTH |
| Ga0187782_103570352 | 3300017975 | Tropical Peatland | MNGCGSCTLDPTKVAQVVNVLNGLTARDALCLLVGCMLTVLDKAPSDEERQQSLANCMDLLKGVSVGFKH |
| Ga0187782_105692632 | 3300017975 | Tropical Peatland | MDPAKVAQMVNVLNGLSARDALCLLVGCMLTVLDEAPSNEERQQSLDNCIDLLKGLPVGSTH |
| Ga0187782_113470871 | 3300017975 | Tropical Peatland | APKQWRAMDPAKVAQMVEVLNGVTARDALCLLVGCMLTVLDEAPSDKERQQSLDNCIDLLKGVPVRLKD |
| Ga0187766_105289662 | 3300018058 | Tropical Peatland | MVEVLNGLTARDALCLLAGRMLAVLDEAPSDEERQQSLDNCIDLLKGVPVSLRH |
| Ga0187765_102720851 | 3300018060 | Tropical Peatland | MDPTKVAQMVEVLNGLSARDALCLLVGCMPTVLDEASSDEERQQSLDNCIDLRKGFESVRRR |
| Ga0187765_104749852 | 3300018060 | Tropical Peatland | AQMVQVLNGLTARDALCLLVGCMLTVLDQAPSDKERLQSLDACIHLLKCAPVGPTLM |
| Ga0187765_107109321 | 3300018060 | Tropical Peatland | VAQMVEVLNGLTARDALCLLVGFILTVLDEAPSDEERQQSLDDCIKLLK |
| Ga0187765_110256401 | 3300018060 | Tropical Peatland | MDPAKVAQMVNVLNGLTARDALCMLVGCMLTVLDEAPSDEERQQSLDSCIDLLRCTKDHL |
| Ga0187772_105601343 | 3300018085 | Tropical Peatland | MDPAKVAQMVSVLNGLTVRDALCILVGCMLAVVDEAPSGEERQQSLDNCIDLLKGLPVGWTQ |
| Ga0126371_102598611 | 3300021560 | Tropical Forest Soil | MDPAKVAQMVEVLNELTARDALSPLVGCMLTVLDEAPSDKERRLSLDNCIDLLKGVP |
| Ga0126371_103417671 | 3300021560 | Tropical Forest Soil | MVEVLNGLTARDALCLLVGCMLTVLDEAPSDEERQQSLDGCIDLLKRGPGPVGSY |
| Ga0126371_115792122 | 3300021560 | Tropical Forest Soil | CTIDPAKIAQMVEVLNALTARDALCLLVGCMLTVLDEAPSDEERQQSLDNCIDLLKGVPVRLKD |
| Ga0126371_118739261 | 3300021560 | Tropical Forest Soil | MDPAKVAQMVEVLNGLSARDALCLLVGCMLTVLGEAPSDEERQQSLDNCIDLRKGFESVRRH |
| Ga0126371_119774032 | 3300021560 | Tropical Forest Soil | MFVSTVDPAKVTQTAETLNALTARDALCLLVGYMLTVSDEAPTDAEHEQSLDNCIDLLKGVPVGLKV |
| Ga0126371_131478813 | 3300021560 | Tropical Forest Soil | MDPAKLAQMVEVLNGLTARDGLCLLVGCMLTVLDEAPSHEERQQPLDSCVDLLRCTKDRL |
| Ga0126371_133916571 | 3300021560 | Tropical Forest Soil | MDPANVAQMVEVLNGLTARDALCLLVGCMLTVLDEAPSAEERQQSLDGCIDLLKRGPGPVGSTY |
| Ga0318541_105814681 | 3300031545 | Soil | MDPAKVAQMVNVLNGLTARDALCLLVGCMLTVLDEAPSDEERQQSLDSCIDLLRCT |
| Ga0318561_104967751 | 3300031679 | Soil | MDPAKVAQMVNVLNGLTARDALCLLVGCMLTVLDEAPSDEERQQSLDGCIDLLKDGPVGLTD |
| Ga0306917_112507122 | 3300031719 | Soil | MDPVKVAQMVELWNGLSARDALCLLVGCMLAVVDEAPSDEERQQSLDNCIDLLKGLSVGWTY |
| Ga0318521_109925713 | 3300031770 | Soil | MDPAKVAQMVNVLNGLTARDALCLLVGCMLTVLDEAPSDEERQQSLDSCIDLLRCTKHRL |
| Ga0318547_107989572 | 3300031781 | Soil | MDPAKVAQMVNVLNGLTARDALCLLVGCMLTVLDEAPSDEERQQSLDSCIDLLRCTKDRL |
| Ga0310917_107025431 | 3300031833 | Soil | MRRRHHESATLSCAQTLRGRTMDPTKVAQMVEVLNGLSARDALCLLVGCMLTVLGEAPSDEERQQSLDSCIDLLKGDDG |
| Ga0306919_110684292 | 3300031879 | Soil | MDPAKVAQMVNVLNGLTARDALCMLVGCMLAVLDEAPSDEERQQSLDGCIELLRCTKDCL |
| Ga0306925_108789702 | 3300031890 | Soil | MVEVLNGLTARDALCLLAGCMLTVLDEAPSDEERQQSLDNCIDLLKGVPVRLKD |
| Ga0306925_111278741 | 3300031890 | Soil | MVEVLNGLTARDALCLLIGCMLTVLDEAPSDEERQQSLDRCIDLLKRDPVALRRTKTKDR |
| Ga0306921_112812752 | 3300031912 | Soil | MDPAKVAQMVNVLNGLTARDALCLLVGCMLTVLDEAPSDEERQQSLDNCVNLLKTYWVDLKH |
| Ga0306921_126804011 | 3300031912 | Soil | MDPAKVAQMVKVLNGLTARDAICLLVGCMLTVLDKAPSDEERQQSLNACIDLLKRAPVGSTH |
| Ga0310912_101634823 | 3300031941 | Soil | MDPAKVAQMVEVLNGLTARDALCLLVGRLLTVLDEAPSDEERQQSLDGCIDLLKRGPGPLGSY |
| Ga0310913_109173481 | 3300031945 | Soil | MNGCWIRTMDPAKVAQMVNVLNGLTARDALCLLVGCMLTVLDEAPSDEERQQSLDSCIDLLRCTKDRL |
| Ga0310910_113296811 | 3300031946 | Soil | MDPAKVAQMVNVLNGLTARDALRLVGCMLSVLDEAPSDEERQQSPDNCIDLLKGVPVRLK |
| Ga0306926_107222742 | 3300031954 | Soil | MNGCGSRTMDPAKVAQMVNVLNGLTARDALCMLVGCMLAVLDEAPSDEERQQSLDNCIDLLKGLSVGWTY |
| Ga0306926_115822142 | 3300031954 | Soil | MDPAKVAQMVEVLNGLTARDALCLLVGCILTVLDEAPSDEERQQSLDSCIDLLRCTKDRL |
| Ga0306922_104769193 | 3300032001 | Soil | KVAQMVEVLNGLTARDALCLLVGCMLTVLDEAPSDEERQQSLDNCVNLLKTYWVDLKH |
| Ga0306922_107771961 | 3300032001 | Soil | MDPAKVAQMVEVLNGLSARDALCLLVGCMLTVLDEAPSDEERQQSLDNCIDLLKGLSVGWTY |
| Ga0306922_109627042 | 3300032001 | Soil | MDRAKVAQMVNVLNELTARDALCLLVGCMLTVLDEAPSDEERQQSLDGCIELLKRIPVGSTH |
| Ga0318507_103897791 | 3300032025 | Soil | MNGCGSCTLDPTKVAQMVNVLNGLTALCLLVGCMLTVSDEAPSDEERQQSLDNCIDLLKVFQSVRR |
| Ga0306924_115597642 | 3300032076 | Soil | MDPVKVAQMVELWNGLSARDALCLLVGCMLAVVDEAPSDEERQQSLDNCIDLLKGLSAGWTY |
| Ga0306924_117811622 | 3300032076 | Soil | MDPAKVAQMVAVLNGLSARDALCLLVGCMLTVLDEAPSDEDRQQSLDNCIDLLKGLPVGWAH |
| Ga0306920_1035047352 | 3300032261 | Soil | MDPAKLSQMVEVLNGLTARDALCRLVGRMLTVLDEAPSDEDRQQSLDNRIDLPNGSRSV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |