Basic Information | |
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Family ID | F106012 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 100 |
Average Sequence Length | 66 residues |
Representative Sequence | ALAEIERLQSEVADLQHTKFDGGLSNLSPTLTASATDWFKKFLKRKQVLTGEIKSTESYTD |
Number of Associated Samples | 90 |
Number of Associated Scaffolds | 100 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 0.00 % |
% of genes near scaffold ends (potentially truncated) | 21.00 % |
% of genes from short scaffolds (< 2000 bps) | 19.00 % |
Associated GOLD sequencing projects | 87 |
AlphaFold2 3D model prediction | No |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (97.000 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (42.000 % of family members) |
Environment Ontology (ENVO) | Unclassified (42.000 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (42.000 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 54.10% β-sheet: 0.00% Coil/Unstructured: 45.90% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Groundwater Sediment Groundwater Sediment Soil Soil Vadose Zone Soil Terrestrial Soil Soil Hardwood Forest Soil Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Switchgrass Rhizosphere Arabidopsis Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Arabidopsis Rhizosphere Corn, Switchgrass And Miscanthus Rhizosphere Miscanthus Rhizosphere Populus Endosphere Populus Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI24742J22300_100310431 | 3300002244 | Corn, Switchgrass And Miscanthus Rhizosphere | EIERLQSEVADLQHTKFDGGLRNLSPTLTATDWFKKFLKRKQVLTGEIKSTESYAD* |
Ga0062593_1033536071 | 3300004114 | Soil | LAEIERLQSEVADLQHTKFDGGLSNLSPTLTASATDWFKKFLKRKQLLTGEIKSTESYTD |
Ga0062594_1012043392 | 3300005093 | Soil | LAEIERLQSEVADLQHTKFDGGLRNLSPTLTATDWFKKFLKRKQVLTGEIKSTESYAD* |
Ga0066807_10262311 | 3300005161 | Soil | IERLRSEADLHRETSHALRDALAEIERLQSEAADLQHTKFDRGLSNLSPTLTASATDWFKKFLKRKQVLTGEIKGTESYAD* |
Ga0066869_100741693 | 3300005165 | Soil | ALAEIERLQSEVADLQHATFDGGLSNLSPTLTASATDWFKNFLKRKQVLTGEIKGTESHAD* |
Ga0070658_106865732 | 3300005327 | Corn Rhizosphere | VADLQHTKFDGGLSNLSPTLTASATDWFKKFLKRKQLLTGEIKSTESYTD* |
Ga0070676_104256122 | 3300005328 | Miscanthus Rhizosphere | ALAEIERLQSEVADLQHTKFDGGLSNLSPTLTASATDWFKEFLKRKQLLTGEIKSTESYTD* |
Ga0070670_1008622041 | 3300005331 | Switchgrass Rhizosphere | RLRSEADLHRETSHAMRDALAEIERLQSEVADLQYTKFDGGLSNLSPTLTASATDWFKNFLKRKQVLTGEIKSTESYTD* |
Ga0068869_1006401801 | 3300005334 | Miscanthus Rhizosphere | ALAEIERLQSEVADLQHTTFDGGLGSLSPMLTASATDWFKNFLKRKQVLTGKIKSTESHAD* |
Ga0070675_1003057693 | 3300005354 | Miscanthus Rhizosphere | ADLHRETSHALRDALAEIERLQSEVADLQHTTFDGGLGSLSPMLTASATDWFKNFLKRKQVLTGKIKSTESHAD* |
Ga0070671_1012216031 | 3300005355 | Switchgrass Rhizosphere | DALAEIERLQSEVADLQHTTFDGGLGSLSPMLTASATDWFKNFLKRKQVLTGKIKSTESHAD* |
Ga0070673_1004784201 | 3300005364 | Switchgrass Rhizosphere | ALAEIERLQSEVADLQHTTFDGGLGSLSPMLTGSATEWFKNFLKRKQVLTGKIKSTESHAD* |
Ga0070713_1022475372 | 3300005436 | Corn, Switchgrass And Miscanthus Rhizosphere | KFDGGLSNLSRTLTASATDWLKKFLKRKQVLTGEIKSTESFTD* |
Ga0070685_101957592 | 3300005466 | Switchgrass Rhizosphere | ALAEIERLQSEVADLQHTKFDGGLSNLSPTLTASATDWFKKFLKRKQVLTGEIKSTESYTD* |
Ga0070664_1018490471 | 3300005564 | Corn Rhizosphere | RLQSEVADLQHTKFDGGLRNLSPTLTATDWFKKFLKRKQVLTGEIKSTESYAD* |
Ga0070664_1020370891 | 3300005564 | Corn Rhizosphere | EIERLRSEADLHRETSHALRDALAEIERLQSEVADLQHTTFDGGLGSLSPMLTGSATEWFKNFLKRKQVLTGKIKSTESHAD* |
Ga0068866_102795561 | 3300005718 | Miscanthus Rhizosphere | IERLQSEVADLQHTKFDGGLSNLSPTLTASATDWFKKFLKRKQLLTGEIKSTESYTD* |
Ga0068861_1020262102 | 3300005719 | Switchgrass Rhizosphere | ETSHALRDALAEIERLQSEVADLQHTTFDGGLSNLSPMLTASATDWFKNFLKRKQVLTGKIKGTESHAD* |
Ga0070715_101407471 | 3300006163 | Corn, Switchgrass And Miscanthus Rhizosphere | SEVADLQHTKFDGGLRNLSPTLTATDWFKKFLKRKQVLTGEIKSTESYAD* |
Ga0075367_107298801 | 3300006178 | Populus Endosphere | DLQHTKFDGGLRNLSPTLTATDWFKKFLKRKQVLTGEIKSTESYAD* |
Ga0074057_114160341 | 3300006605 | Soil | SHAMRDALAEIERLQSEVADLQHTKFDGGLSNLSPTLTASATDWFKKFLKRKQLLTGEIKSTESYTD* |
Ga0075434_1009347781 | 3300006871 | Populus Rhizosphere | ALAEIERLQSEVADLQHTKFDGGLSNLSPTLTASATDWFKNFLKRKQVLTGKIKSTESYTD* |
Ga0075435_1020303861 | 3300007076 | Populus Rhizosphere | SEVADLQHTTFDGGLGSLSPMLTGSATDWFKNFLKRKQVLTGKIKSTESHAD* |
Ga0105251_105408481 | 3300009011 | Switchgrass Rhizosphere | EVADLQHTKFDGGLRNLSPTLTATDWFKKFLKRKQVLTGEIKSTESYAD* |
Ga0105250_105247151 | 3300009092 | Switchgrass Rhizosphere | ADLHRETSRALRDAVAEIERLQSEVADLQHTTFDGGLSNLSPMLTASATDWFKNFLKRKQVLTGEIKGTESHAD* |
Ga0105245_101042401 | 3300009098 | Miscanthus Rhizosphere | LSEIERLRSAADLHRETSHALRDALAEIERLQSEVADLQHTTFDGSLGSLSPMLTGSATDWFKNFLKRKQVLTGKIKGTESHAD* |
Ga0134128_130165871 | 3300010373 | Terrestrial Soil | ETSHAMRDALAEIERLQSEVADLQHTKFDGGLSNLSPTLTASATDWFKNFLKRKQVLTGEIKSTESYTD* |
Ga0105239_102090951 | 3300010375 | Corn Rhizosphere | LSEIELLRSEADLHREISHALRDALAEIERLQSEVADLQHTTFDGGLGSLSPMLTASATDWFKNFLKRKQVLTGKIKSTESHAD* |
Ga0134122_108069341 | 3300010400 | Terrestrial Soil | RDALAEIERLQSEVADLQHTTFDGGLSNLSPTLTASATDWFKKFLKRKQVLTGEIKSTESYTD* |
Ga0134121_105645901 | 3300010401 | Terrestrial Soil | ADLHRETSHAMRGALAEIERLQSEVADLQHTKFDGGLSNLSPTLTASATDWFKNFLKRKQVLTGEIKSTESYTD* |
Ga0105246_115101461 | 3300011119 | Miscanthus Rhizosphere | EIERLQSEVADLQHTKFDGGLSNLSPTLTASATDWFKKFLKRKQLLTGEIKSTESYTD* |
Ga0157342_10752282 | 3300012507 | Arabidopsis Rhizosphere | MRDALAEIERLQSEVADLQHTKFDGGLSNLSPTLTASATDWFKKFLKRKQLLTGEIKSTESYTD* |
Ga0157283_103517211 | 3300012907 | Soil | EIERLQSEVADLQHTTFDGGLGSLSPMLTGSATEWFKNFLKRKQVLTGEIKSTESYTD* |
Ga0157310_101138853 | 3300012916 | Soil | AEIERLQSEVADLQHTTFDGGLGSLSPMLTGSATEWFKNFLKRKQVLTGKIKSTESHAD* |
Ga0164300_109894121 | 3300012951 | Soil | ALAEIERLQSEVADLQHTTVDGGLSNLSPMLTASATDWFKNFLKRKQVLTGKIKGTES* |
Ga0164299_100346996 | 3300012958 | Soil | AEIERLQSEVADLQHTKFDGGLRNLSPTLTATDWFKKFLKRKQVLTGEIKSTESYAD* |
Ga0164308_104824671 | 3300012985 | Soil | LAEIERLQSEAADLQHTKFDRGLSNLSPTLTASATDWFKKFLERKQVLTGEIKGTESHAD |
Ga0164307_102981451 | 3300012987 | Soil | DLHCETSHAMRDALAEIERLQSEVADLQHTKFDGGLSNLSPTLTASATDWFKKFLKRKQLLTGEIKSTESYTD* |
Ga0173478_102853891 | 3300015201 | Soil | SEIGRLRSEADLHRETSHAMRDALAEIERLQSEVADLQYTKFDGGLSNLSPTLTASATDWFKNFLKRKQVLTGEIKSTESYTD* |
Ga0132255_1028486872 | 3300015374 | Arabidopsis Rhizosphere | ALAEIERLQSEVADLQHTKFDGGLRNLSPTLTATDWFKKFLKRKQVLTGEIKSTESYAD* |
Ga0184608_101384852 | 3300018028 | Groundwater Sediment | LRSEADLHRETSHALRDALAEIERLQSEAADLQHTKFDRGLSNSPTLTASATDWFKKFLERKQVLTGEIKGTESYAD |
Ga0184619_100640151 | 3300018061 | Groundwater Sediment | ADLHRETSHALRDALVEIERLQSEAADLQHTKFDGGLSNLSPTLTPSATDWFKKFLKRKQVLTGEIKGTESYAD |
Ga0184619_104326192 | 3300018061 | Groundwater Sediment | DLHRETSHALRDALAEIERLQSEAADLQHTKFDRGLSNLSPTLTASATDWFKNFLKRKQVLTGEIKGTESYAD |
Ga0184609_102179171 | 3300018076 | Groundwater Sediment | LAEIERLQSEAADLQHTKFDGGLSNLSPTLTASATDWFKKFLKRKQVLTGEIKGTESYAD |
Ga0184639_100950261 | 3300018082 | Groundwater Sediment | ALSEIERLRSEADLHRETSHALRDALAEIERLQSEAADLQHTKFDGGLSNLSPTLTASATDWFKKFLERKQVLTGEIKGTESHAD |
Ga0193705_10543122 | 3300019869 | Soil | EIERLRSEADLHRETSHALRDALAEIERLQSEAADLQHTKFDGGLSNLSPTLTASATDWFKKFLKRKQVLTGEIKGTESYAD |
Ga0193705_10646351 | 3300019869 | Soil | HALRDALGEIERLQSEAADLQHTKFDRGLSNSPTLTASATDWFKKFLERKQVLTGEIKGTESYAD |
Ga0193727_10999091 | 3300019886 | Soil | ADLHRETSHALRDALAEIERLQSEAADLQHTKFDGGLSNLSPTLTASATDWFKKFLKRKQVLTGEIKGTESYAD |
Ga0193729_11776542 | 3300019887 | Soil | EIERLRSEADLHRETSHALRDALAEIERLQSEAADLQHTKFDRGLSNLSPTLTASATDWFKNFLKRKQVLTGEIKGTESYAD |
Ga0193731_10561502 | 3300020001 | Soil | EIERLRSEADLHRETSHALRDALAEIERLQSEVADLQHTKFDRGLSNLSPTLTASATDWFKNFLKRKQVLTGEIKGTESYAD |
Ga0193724_10819941 | 3300020062 | Soil | HALRDALAEIERLQSEVADLQHTTFDGGLSNLSPMLTASATDWFKNFLKRKQVLIGKIKGTESHAD |
Ga0210382_104084881 | 3300021080 | Groundwater Sediment | LGEIERLRSDVDLHRETSHALRDALAEIGRLQPEAADLQHTKFDKGLSNLPPALTAWATWFTRLLERKQVLTGEKVKGRKSHAD |
Ga0207688_102476471 | 3300025901 | Corn, Switchgrass And Miscanthus Rhizosphere | LQSEVADLQYTKFDGGLSNLSPTLTASATDWFKNFLKRKQVLTGEIKSTESYTD |
Ga0207680_101617591 | 3300025903 | Switchgrass Rhizosphere | HTKFDGGLRNLSPTLTATDWFKKFLKRKQVLTGEIKSTESYAD |
Ga0207680_103384091 | 3300025903 | Switchgrass Rhizosphere | IERLRSEADLHCETSHAMRDALAEIERLQSEVADLQHTKFDGGLSNLSPTLTASATDWFKKFLKRKQLLTGEIKSTESYTD |
Ga0207681_112100862 | 3300025923 | Switchgrass Rhizosphere | RLRSEADLHRETSHALRDALAEIERLQSEVADLQHTTFDGGLSNLSPMLTASATDWFKNFLKRKQVFTGKIKSTESHAD |
Ga0207650_100247066 | 3300025925 | Switchgrass Rhizosphere | SEVADLQYTKFDGGLSNLSPTLTASATDWFKNFLKRKQVLTGEIKSTESYTD |
Ga0207706_104797971 | 3300025933 | Corn Rhizosphere | LRSEADLHRETSHAMRDALAEIERLQSEVADLQYTKFDGGLSNLSPTLTASATDWFKNFLKRKQVLTGEIKSTESYTD |
Ga0207686_116660851 | 3300025934 | Miscanthus Rhizosphere | AADLHRETSHALRDALAEIERLQSEVADLQHTTFDGGLGSLSPMLTGSATEWFKNFLKRKQVLTGKIKSTESHAD |
Ga0207669_109964272 | 3300025937 | Miscanthus Rhizosphere | DALAEIERLQSEVADLQYTKFDGGLSNLSPTLTASATDWFKKFLKRKQVLTGEIKSTESYTD |
Ga0207651_107602132 | 3300025960 | Switchgrass Rhizosphere | IERMQSEVAHLQHTKFDGGLSNLSPTLTASATDWFKNFLKQKQVLTGEIKSTESYTD |
Ga0207658_109010621 | 3300025986 | Switchgrass Rhizosphere | TKFDGGLRNLSPTLTATDWFKKFLKRKQVLTGEIKSTESYAD |
Ga0207702_110375621 | 3300026078 | Corn Rhizosphere | LAEIERLQSEVADLQHTKFDGGLRNLSPTLTATDWFKKFLKRKQVLTGEIKSTESYAD |
Ga0207641_101663435 | 3300026088 | Switchgrass Rhizosphere | RCLAEIERLQSEVADLQHTKFDGGLSNLSPTLTASATDWFKKFLKRKQLLTGEIKSTESYTD |
Ga0207675_1003766593 | 3300026118 | Switchgrass Rhizosphere | AMRDALAEIERLQSEVADLQYTKFDGGLSNLSPTLTASATDWFKNFLKRKQVLTGEIKSTESYTD |
Ga0207683_111650211 | 3300026121 | Miscanthus Rhizosphere | VADLQYTKFDGGLSNLSPTLTASATDWFKNFLKRKQVLTGEIKSTESYTD |
Ga0209179_11598391 | 3300027512 | Vadose Zone Soil | ALRDALGEIERLQSEAADLQHTKFDRGLSNSPTLTASATDWFKKFLERKQVLTGEIKGTKGYAD |
Ga0208990_10410293 | 3300027663 | Forest Soil | RSDADLHRKTSKALRDALAEIERLQLEAADSQHTKFDRGLSNLPSAPTASATDWSTKFLERKQLLTGEKVKGRKSHAD |
Ga0207428_111177472 | 3300027907 | Populus Rhizosphere | DLQHTKFDGGLRNLSPTLTATDWFKKFLKRKQVLTGEIKSTESYAD |
Ga0268266_104114231 | 3300028379 | Switchgrass Rhizosphere | SEADLHCETSHAMRDALAEIERLQSEVADLQHTKFDGGLSNLSPTLTASATDWFKKFLKRKQLLTGEIKSTESYTD |
Ga0307291_11423211 | 3300028707 | Soil | SEADLHRETSHALRDALVEIERLQSEAADLQHTKFDRGLSNLSPTLTASATDWFKNFLKRKQVLTGEIKGTKSYAD |
Ga0307322_100770582 | 3300028710 | Soil | LHRETSHALRDALAEIERLQSEVRDLQHTKFGGLSNLSPTLSASATDWFKKFLKRKQVLTGEIKDTESYAD |
Ga0307303_101752571 | 3300028713 | Soil | LAEIGRLRPEAADLQHTKFDKGLSNLPPALTAWATWFTRLLERKQVLTGEKVKGRKSHAD |
Ga0307311_102287481 | 3300028716 | Soil | SHALRDALVEIERLQSEAADLQHTKFDGGLSNLSPTLTASATDWFKKFLKRKQVLTGEIKGTESYAD |
Ga0307311_102335751 | 3300028716 | Soil | RETSHALRDALAEIERLQSEVADLQHTKFDRGLSNLSPTLTASATDWFKNFLKRKQVLTGEIKGTESYAD |
Ga0307319_101623481 | 3300028722 | Soil | GEPLSEAADLQHTKFDGGLSNLSPTLTASATDWFKKFLKRKQVLTGEIKGTESYAD |
Ga0307319_101773751 | 3300028722 | Soil | HRETSHALRDALGEIERLQSEAADLQHTKFDRGLSNSPTLTASATDWFKKFLERKQVLTGEIKGTESYAD |
Ga0307280_101110001 | 3300028768 | Soil | SHALRDALAEIERLQSEAADLQHTKFDRGLSNLSPTLTASATDWFKSFLKRKRVLTGEIKGTESYAD |
Ga0307288_100709081 | 3300028778 | Soil | LSEAADLQHTKFDGGLSNLSPTLTASATDWFKKFLKRKQVLTGEIKGTESYAD |
Ga0307282_100520521 | 3300028784 | Soil | DLQHTKFDGGPSNLSPTLTASATDWFKKFLKRKQVLTGEIKGTESYAD |
Ga0307282_101272771 | 3300028784 | Soil | ALSEIERLRSEADLHRETSHALRDALGEIERLQSEAADLQHTKFDRGLSNSPTLTASATDWFKKFLERKQVLTGEIKGTESYAD |
Ga0307323_100396721 | 3300028787 | Soil | RLRSDVDLHRETSNALRDALAEIGRLQSEAADLQHTKFDKGLSNLAPALTAWATDWFTRLLERKQVLTGEKVKGRKSHAD |
Ga0307287_103670161 | 3300028796 | Soil | DLHRETSNALRDALAEIGRLQPEAADLQHTKFDKGLSNLPPALTAWATWFTRLLERKQVLTGEKVKGRKSHAD |
Ga0307503_100740862 | 3300028802 | Soil | HALREAVAEIERLQSEVADLQHTTFDGGLSNLSPMLTASATDWFKNFLKRKQVLTGKIKGTESHAD |
Ga0307305_103559892 | 3300028807 | Soil | TSHALRDAFVEIERLQSEAADLQHTKFDGGLSNLSPTLTASATDWFKKFLKRKQVLTGEIKGTESYAD |
Ga0307310_104153961 | 3300028824 | Soil | SEADLHRETSHALRDALVEIERLQSEAADLQHTKFGRGSNSPTLTASATDWFKKFLKRKQVLTGEIKGTESYAD |
Ga0307312_109720121 | 3300028828 | Soil | DLQHTKFDGGLSNLSPTLSASATDWFKKFLKRKQVLTGEIKDTESYAD |
Ga0307286_100339341 | 3300028876 | Soil | TSHALRDALVEIERLQSEAADLQHTKFDRGLSNLSPTLTASATDWFKNFLKRKQVLTGEIKGTESYAD |
Ga0307286_101935801 | 3300028876 | Soil | DLHRETSHALRDALGEIERLQSEAADLQHTKFDRGLSNSPTLTASATDWFKKFLERKQVLTGEIKGTESYAD |
Ga0307308_100648653 | 3300028884 | Soil | HRETSHALRDALAEIGRLRPEAADLQHTKFDKGLSNLPPALTAWATWFTRLLERKQVLTGEKVKGRKSHAD |
Ga0307308_101068381 | 3300028884 | Soil | LQSEAADLQHTKFDRGLSNSPTLTASATDWFKKFLERKQVLTGEIKGTESYAD |
Ga0307308_104382211 | 3300028884 | Soil | QHTKFDGGLSNLSPTLSASATDWFKKFLKRKQVLTGEIKGTESYAD |
Ga0307304_100186751 | 3300028885 | Soil | HALRDALVEIERLQSEAADLQHTKFDGGLSNLSPTLSASATDWFKKFLKRKQVLTGEIKGTESYAD |
Ga0308198_10914112 | 3300030904 | Soil | DLHRETSHALRDALAEIERLQSEAADLQHTKFDRGLSNSPTLTASATDWFKKFLERKQVFTGEIKGTESHAD |
Ga0308155_10145072 | 3300030987 | Soil | VVGCSDKSGEPLSEAADLQHTKFDGGLSNLSPTLTASATDWFKKFLKRKQVLTGEIKGTESHAD |
Ga0308197_101841881 | 3300031093 | Soil | EIERLRSEADLHRETSHALRDALAEIERLQSEAADLQHTKFDRGLSNSPTLTASATDWFKKFLERKQVLTGEIKGTKSYAD |
Ga0308187_104334061 | 3300031114 | Soil | LHRETSHALRDALGEIERLQSEAADLQHTKFDRGLSNSPTLTASATDWFKKFLERKQVLTGEIKGTESYAD |
Ga0307500_102713421 | 3300031198 | Soil | RDALAEIERLQSEVADLQHTTFDGGLSNLSPMLTASATDWFKNFLKRKQVLTGKIKGTESHAD |
Ga0307497_106238891 | 3300031226 | Soil | SEIERLRSEADLHRETSHALRDAVAEIERLQSEVADLQHTTFDGGLSNLSPMLTASATDWFKNFLKRKQVLTGKIKGTESHAD |
Ga0307471_1040181731 | 3300032180 | Hardwood Forest Soil | PCEGEGGHRETSHAMRDALAEIERLQSEVADLQHTKFGGLSNLSPTLTASATDWFKKFLKRKQVLTGKIKGTESYAD |
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