Metagenome / Metatranscriptome Family F106012

Basic Information
Family ID	F106012
Family Type	Metagenome / Metatranscriptome
Number of Sequences	100
Average Sequence Length	66 residues
Representative Sequence	ALAEIERLQSEVADLQHTKFDGGLSNLSPTLTASATDWFKKFLKRKQVLTGEIKSTESYTD
Number of Associated Samples	90
Number of Associated Scaffolds	100

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	21.00 %
% of genes from short scaffolds (< 2000 bps)	19.00 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (97.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (42.000 % of family members)
Environment Ontology (ENVO)	Unclassified (42.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (42.000 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 54.10% β-sheet: 0.00% Coil/Unstructured: 45.90%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 100 Family Scaffolds
PF13467	RHH_4	4.00
PF03050	DDE_Tnp_IS66	2.00
PF02735	Ku	1.00
PF00365	PFK	1.00
PF09361	Phasin_2	1.00
PF03781	FGE-sulfatase	1.00

COG ID	Name	Functional Category	% Frequency in 100 Family Scaffolds
COG3436	Transposase	Mobilome: prophages, transposons [X]	2.00
COG0205	6-phosphofructokinase	Carbohydrate transport and metabolism [G]	1.00
COG1262	Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain	Posttranslational modification, protein turnover, chaperones [O]	1.00
COG1273	Non-homologous end joining protein Ku, dsDNA break repair	Replication, recombination and repair [L]	1.00

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.00 %
All Organisms	root	All Organisms	3.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.00 %
cellular organisms	root	All Organisms → cellular organisms	3.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.00 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	3.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.00 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.00 %

Scaffold	Taxonomy	Length	IMG/M Link
3300002244\|JGI24742J22300_10031043	Not Available	934	Open in IMG/M
3300005327\|Ga0070658_10686573	Not Available	888	Open in IMG/M
3300005328\|Ga0070676_10425612	Not Available	929	Open in IMG/M
3300005331\|Ga0070670_100862204	Not Available	820	Open in IMG/M
3300005334\|Ga0068869_100640180	Not Available	902	Open in IMG/M
3300005354\|Ga0070675_100305769	All Organisms → cellular organisms → Bacteria → Proteobacteria	1402	Open in IMG/M
3300005466\|Ga0070685_10195759	Not Available	1311	Open in IMG/M
3300005718\|Ga0068866_10279556	Not Available	1033	Open in IMG/M
3300006871\|Ga0075434_100934778	Not Available	882	Open in IMG/M
3300009011\|Ga0105251_10540848	Not Available	548	Open in IMG/M
3300012916\|Ga0157310_10113885	Not Available	888	Open in IMG/M
3300012958\|Ga0164299_10034699	All Organisms → cellular organisms → Bacteria	2229	Open in IMG/M
3300018028\|Ga0184608_10138485	Not Available	1042	Open in IMG/M
3300018082\|Ga0184639_10095026	Not Available	1573	Open in IMG/M
3300020001\|Ga0193731_1056150	Not Available	1035	Open in IMG/M
3300025901\|Ga0207688_10247647	Not Available	1079	Open in IMG/M
3300025903\|Ga0207680_10161759	All Organisms → cellular organisms → Bacteria	1502	Open in IMG/M
3300025933\|Ga0207706_10479797	Not Available	1074	Open in IMG/M
3300025937\|Ga0207669_10996427	Not Available	704	Open in IMG/M
3300025986\|Ga0207658_10901062	Not Available	805	Open in IMG/M
3300026088\|Ga0207641_10166343	Not Available	2009	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	62.00%
Host-Associated	Host-Associated	38.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	56.00%
Plants	Host-Associated → Plants	38.00%
Aquatic	Environmental → Aquatic	6.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	56.00%
Rhizosphere	Host-Associated → Plants → Rhizosphere	26.00%
Rhizoplane	Host-Associated → Plants → Rhizoplane	11.00%
Sediment	Environmental → Aquatic → Sediment	5.00%
Freshwater	Environmental → Aquatic → Freshwater	1.00%
Roots	Host-Associated → Plants → Roots	1.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	52.00%
Soil	Host-Associated → Plants → Rhizosphere → Soil	17.00%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	9.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.00%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.00%
Loam	Environmental → Terrestrial → Soil → Loam	4.00%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.00%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.00%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.00%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	1.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	49.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	17.00%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	9.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.00%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.00%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.00%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.00%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.00%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.00%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.00%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.00%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.00%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	1.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	42.00%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	10.00%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	5.00%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	4.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.00%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.00%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.00%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.00%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.00%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	3.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.00%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.00%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.00%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	2.00%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.00%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.00%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.00%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.00%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.00%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.00%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.00%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.00%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	1.00%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.00%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	1.00%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.00%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002244	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M1	Host-Associated	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005161	Soil and rhizosphere microbial communities from Laval, Canada - mgLPA	Environmental	Open in IMG/M
3300005165	Soil and rhizosphere microbial communities from Laval, Canada - mgHMC	Environmental	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006178	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2	Host-Associated	Open in IMG/M
3300006605	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009011	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG	Host-Associated	Open in IMG/M
3300009092	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012507	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.7.yng.070610	Host-Associated	Open in IMG/M
3300012907	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1	Environmental	Open in IMG/M
3300012916	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S213-509R-2	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300015201	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2	Environmental	Open in IMG/M
3300019869	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m2	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300020001	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a2	Environmental	Open in IMG/M
3300020062	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a1	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027512	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 (SPAdes)	Environmental	Open in IMG/M
3300027663	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028707	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_148	Environmental	Open in IMG/M
3300028710	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380	Environmental	Open in IMG/M
3300028713	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_184	Environmental	Open in IMG/M
3300028716	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198	Environmental	Open in IMG/M
3300028722	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028778	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300030904	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_202 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030987	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_144 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031093	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031198	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 14_S	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI24742J22300_100310431	3300002244	Corn, Switchgrass And Miscanthus Rhizosphere	EIERLQSEVADLQHTKFDGGLRNLSPTLTATDWFKKFLKRKQVLTGEIKSTESYAD*
Ga0062593_1033536071	3300004114	Soil	LAEIERLQSEVADLQHTKFDGGLSNLSPTLTASATDWFKKFLKRKQLLTGEIKSTESYTD
Ga0062594_1012043392	3300005093	Soil	LAEIERLQSEVADLQHTKFDGGLRNLSPTLTATDWFKKFLKRKQVLTGEIKSTESYAD*
Ga0066807_10262311	3300005161	Soil	IERLRSEADLHRETSHALRDALAEIERLQSEAADLQHTKFDRGLSNLSPTLTASATDWFKKFLKRKQVLTGEIKGTESYAD*
Ga0066869_100741693	3300005165	Soil	ALAEIERLQSEVADLQHATFDGGLSNLSPTLTASATDWFKNFLKRKQVLTGEIKGTESHAD*
Ga0070658_106865732	3300005327	Corn Rhizosphere	VADLQHTKFDGGLSNLSPTLTASATDWFKKFLKRKQLLTGEIKSTESYTD*
Ga0070676_104256122	3300005328	Miscanthus Rhizosphere	ALAEIERLQSEVADLQHTKFDGGLSNLSPTLTASATDWFKEFLKRKQLLTGEIKSTESYTD*
Ga0070670_1008622041	3300005331	Switchgrass Rhizosphere	RLRSEADLHRETSHAMRDALAEIERLQSEVADLQYTKFDGGLSNLSPTLTASATDWFKNFLKRKQVLTGEIKSTESYTD*
Ga0068869_1006401801	3300005334	Miscanthus Rhizosphere	ALAEIERLQSEVADLQHTTFDGGLGSLSPMLTASATDWFKNFLKRKQVLTGKIKSTESHAD*
Ga0070675_1003057693	3300005354	Miscanthus Rhizosphere	ADLHRETSHALRDALAEIERLQSEVADLQHTTFDGGLGSLSPMLTASATDWFKNFLKRKQVLTGKIKSTESHAD*
Ga0070671_1012216031	3300005355	Switchgrass Rhizosphere	DALAEIERLQSEVADLQHTTFDGGLGSLSPMLTASATDWFKNFLKRKQVLTGKIKSTESHAD*
Ga0070673_1004784201	3300005364	Switchgrass Rhizosphere	ALAEIERLQSEVADLQHTTFDGGLGSLSPMLTGSATEWFKNFLKRKQVLTGKIKSTESHAD*
Ga0070713_1022475372	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	KFDGGLSNLSRTLTASATDWLKKFLKRKQVLTGEIKSTESFTD*
Ga0070685_101957592	3300005466	Switchgrass Rhizosphere	ALAEIERLQSEVADLQHTKFDGGLSNLSPTLTASATDWFKKFLKRKQVLTGEIKSTESYTD*
Ga0070664_1018490471	3300005564	Corn Rhizosphere	RLQSEVADLQHTKFDGGLRNLSPTLTATDWFKKFLKRKQVLTGEIKSTESYAD*
Ga0070664_1020370891	3300005564	Corn Rhizosphere	EIERLRSEADLHRETSHALRDALAEIERLQSEVADLQHTTFDGGLGSLSPMLTGSATEWFKNFLKRKQVLTGKIKSTESHAD*
Ga0068866_102795561	3300005718	Miscanthus Rhizosphere	IERLQSEVADLQHTKFDGGLSNLSPTLTASATDWFKKFLKRKQLLTGEIKSTESYTD*
Ga0068861_1020262102	3300005719	Switchgrass Rhizosphere	ETSHALRDALAEIERLQSEVADLQHTTFDGGLSNLSPMLTASATDWFKNFLKRKQVLTGKIKGTESHAD*
Ga0070715_101407471	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	SEVADLQHTKFDGGLRNLSPTLTATDWFKKFLKRKQVLTGEIKSTESYAD*
Ga0075367_107298801	3300006178	Populus Endosphere	DLQHTKFDGGLRNLSPTLTATDWFKKFLKRKQVLTGEIKSTESYAD*
Ga0074057_114160341	3300006605	Soil	SHAMRDALAEIERLQSEVADLQHTKFDGGLSNLSPTLTASATDWFKKFLKRKQLLTGEIKSTESYTD*
Ga0075434_1009347781	3300006871	Populus Rhizosphere	ALAEIERLQSEVADLQHTKFDGGLSNLSPTLTASATDWFKNFLKRKQVLTGKIKSTESYTD*
Ga0075435_1020303861	3300007076	Populus Rhizosphere	SEVADLQHTTFDGGLGSLSPMLTGSATDWFKNFLKRKQVLTGKIKSTESHAD*
Ga0105251_105408481	3300009011	Switchgrass Rhizosphere	EVADLQHTKFDGGLRNLSPTLTATDWFKKFLKRKQVLTGEIKSTESYAD*
Ga0105250_105247151	3300009092	Switchgrass Rhizosphere	ADLHRETSRALRDAVAEIERLQSEVADLQHTTFDGGLSNLSPMLTASATDWFKNFLKRKQVLTGEIKGTESHAD*
Ga0105245_101042401	3300009098	Miscanthus Rhizosphere	LSEIERLRSAADLHRETSHALRDALAEIERLQSEVADLQHTTFDGSLGSLSPMLTGSATDWFKNFLKRKQVLTGKIKGTESHAD*
Ga0134128_130165871	3300010373	Terrestrial Soil	ETSHAMRDALAEIERLQSEVADLQHTKFDGGLSNLSPTLTASATDWFKNFLKRKQVLTGEIKSTESYTD*
Ga0105239_102090951	3300010375	Corn Rhizosphere	LSEIELLRSEADLHREISHALRDALAEIERLQSEVADLQHTTFDGGLGSLSPMLTASATDWFKNFLKRKQVLTGKIKSTESHAD*
Ga0134122_108069341	3300010400	Terrestrial Soil	RDALAEIERLQSEVADLQHTTFDGGLSNLSPTLTASATDWFKKFLKRKQVLTGEIKSTESYTD*
Ga0134121_105645901	3300010401	Terrestrial Soil	ADLHRETSHAMRGALAEIERLQSEVADLQHTKFDGGLSNLSPTLTASATDWFKNFLKRKQVLTGEIKSTESYTD*
Ga0105246_115101461	3300011119	Miscanthus Rhizosphere	EIERLQSEVADLQHTKFDGGLSNLSPTLTASATDWFKKFLKRKQLLTGEIKSTESYTD*
Ga0157342_10752282	3300012507	Arabidopsis Rhizosphere	MRDALAEIERLQSEVADLQHTKFDGGLSNLSPTLTASATDWFKKFLKRKQLLTGEIKSTESYTD*
Ga0157283_103517211	3300012907	Soil	EIERLQSEVADLQHTTFDGGLGSLSPMLTGSATEWFKNFLKRKQVLTGEIKSTESYTD*
Ga0157310_101138853	3300012916	Soil	AEIERLQSEVADLQHTTFDGGLGSLSPMLTGSATEWFKNFLKRKQVLTGKIKSTESHAD*
Ga0164300_109894121	3300012951	Soil	ALAEIERLQSEVADLQHTTVDGGLSNLSPMLTASATDWFKNFLKRKQVLTGKIKGTES*
Ga0164299_100346996	3300012958	Soil	AEIERLQSEVADLQHTKFDGGLRNLSPTLTATDWFKKFLKRKQVLTGEIKSTESYAD*
Ga0164308_104824671	3300012985	Soil	LAEIERLQSEAADLQHTKFDRGLSNLSPTLTASATDWFKKFLERKQVLTGEIKGTESHAD
Ga0164307_102981451	3300012987	Soil	DLHCETSHAMRDALAEIERLQSEVADLQHTKFDGGLSNLSPTLTASATDWFKKFLKRKQLLTGEIKSTESYTD*
Ga0173478_102853891	3300015201	Soil	SEIGRLRSEADLHRETSHAMRDALAEIERLQSEVADLQYTKFDGGLSNLSPTLTASATDWFKNFLKRKQVLTGEIKSTESYTD*
Ga0132255_1028486872	3300015374	Arabidopsis Rhizosphere	ALAEIERLQSEVADLQHTKFDGGLRNLSPTLTATDWFKKFLKRKQVLTGEIKSTESYAD*
Ga0184608_101384852	3300018028	Groundwater Sediment	LRSEADLHRETSHALRDALAEIERLQSEAADLQHTKFDRGLSNSPTLTASATDWFKKFLERKQVLTGEIKGTESYAD
Ga0184619_100640151	3300018061	Groundwater Sediment	ADLHRETSHALRDALVEIERLQSEAADLQHTKFDGGLSNLSPTLTPSATDWFKKFLKRKQVLTGEIKGTESYAD
Ga0184619_104326192	3300018061	Groundwater Sediment	DLHRETSHALRDALAEIERLQSEAADLQHTKFDRGLSNLSPTLTASATDWFKNFLKRKQVLTGEIKGTESYAD
Ga0184609_102179171	3300018076	Groundwater Sediment	LAEIERLQSEAADLQHTKFDGGLSNLSPTLTASATDWFKKFLKRKQVLTGEIKGTESYAD
Ga0184639_100950261	3300018082	Groundwater Sediment	ALSEIERLRSEADLHRETSHALRDALAEIERLQSEAADLQHTKFDGGLSNLSPTLTASATDWFKKFLERKQVLTGEIKGTESHAD
Ga0193705_10543122	3300019869	Soil	EIERLRSEADLHRETSHALRDALAEIERLQSEAADLQHTKFDGGLSNLSPTLTASATDWFKKFLKRKQVLTGEIKGTESYAD
Ga0193705_10646351	3300019869	Soil	HALRDALGEIERLQSEAADLQHTKFDRGLSNSPTLTASATDWFKKFLERKQVLTGEIKGTESYAD
Ga0193727_10999091	3300019886	Soil	ADLHRETSHALRDALAEIERLQSEAADLQHTKFDGGLSNLSPTLTASATDWFKKFLKRKQVLTGEIKGTESYAD
Ga0193729_11776542	3300019887	Soil	EIERLRSEADLHRETSHALRDALAEIERLQSEAADLQHTKFDRGLSNLSPTLTASATDWFKNFLKRKQVLTGEIKGTESYAD
Ga0193731_10561502	3300020001	Soil	EIERLRSEADLHRETSHALRDALAEIERLQSEVADLQHTKFDRGLSNLSPTLTASATDWFKNFLKRKQVLTGEIKGTESYAD
Ga0193724_10819941	3300020062	Soil	HALRDALAEIERLQSEVADLQHTTFDGGLSNLSPMLTASATDWFKNFLKRKQVLIGKIKGTESHAD
Ga0210382_104084881	3300021080	Groundwater Sediment	LGEIERLRSDVDLHRETSHALRDALAEIGRLQPEAADLQHTKFDKGLSNLPPALTAWATWFTRLLERKQVLTGEKVKGRKSHAD
Ga0207688_102476471	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	LQSEVADLQYTKFDGGLSNLSPTLTASATDWFKNFLKRKQVLTGEIKSTESYTD
Ga0207680_101617591	3300025903	Switchgrass Rhizosphere	HTKFDGGLRNLSPTLTATDWFKKFLKRKQVLTGEIKSTESYAD
Ga0207680_103384091	3300025903	Switchgrass Rhizosphere	IERLRSEADLHCETSHAMRDALAEIERLQSEVADLQHTKFDGGLSNLSPTLTASATDWFKKFLKRKQLLTGEIKSTESYTD
Ga0207681_112100862	3300025923	Switchgrass Rhizosphere	RLRSEADLHRETSHALRDALAEIERLQSEVADLQHTTFDGGLSNLSPMLTASATDWFKNFLKRKQVFTGKIKSTESHAD
Ga0207650_100247066	3300025925	Switchgrass Rhizosphere	SEVADLQYTKFDGGLSNLSPTLTASATDWFKNFLKRKQVLTGEIKSTESYTD
Ga0207706_104797971	3300025933	Corn Rhizosphere	LRSEADLHRETSHAMRDALAEIERLQSEVADLQYTKFDGGLSNLSPTLTASATDWFKNFLKRKQVLTGEIKSTESYTD
Ga0207686_116660851	3300025934	Miscanthus Rhizosphere	AADLHRETSHALRDALAEIERLQSEVADLQHTTFDGGLGSLSPMLTGSATEWFKNFLKRKQVLTGKIKSTESHAD
Ga0207669_109964272	3300025937	Miscanthus Rhizosphere	DALAEIERLQSEVADLQYTKFDGGLSNLSPTLTASATDWFKKFLKRKQVLTGEIKSTESYTD
Ga0207651_107602132	3300025960	Switchgrass Rhizosphere	IERMQSEVAHLQHTKFDGGLSNLSPTLTASATDWFKNFLKQKQVLTGEIKSTESYTD
Ga0207658_109010621	3300025986	Switchgrass Rhizosphere	TKFDGGLRNLSPTLTATDWFKKFLKRKQVLTGEIKSTESYAD
Ga0207702_110375621	3300026078	Corn Rhizosphere	LAEIERLQSEVADLQHTKFDGGLRNLSPTLTATDWFKKFLKRKQVLTGEIKSTESYAD
Ga0207641_101663435	3300026088	Switchgrass Rhizosphere	RCLAEIERLQSEVADLQHTKFDGGLSNLSPTLTASATDWFKKFLKRKQLLTGEIKSTESYTD
Ga0207675_1003766593	3300026118	Switchgrass Rhizosphere	AMRDALAEIERLQSEVADLQYTKFDGGLSNLSPTLTASATDWFKNFLKRKQVLTGEIKSTESYTD
Ga0207683_111650211	3300026121	Miscanthus Rhizosphere	VADLQYTKFDGGLSNLSPTLTASATDWFKNFLKRKQVLTGEIKSTESYTD
Ga0209179_11598391	3300027512	Vadose Zone Soil	ALRDALGEIERLQSEAADLQHTKFDRGLSNSPTLTASATDWFKKFLERKQVLTGEIKGTKGYAD
Ga0208990_10410293	3300027663	Forest Soil	RSDADLHRKTSKALRDALAEIERLQLEAADSQHTKFDRGLSNLPSAPTASATDWSTKFLERKQLLTGEKVKGRKSHAD
Ga0207428_111177472	3300027907	Populus Rhizosphere	DLQHTKFDGGLRNLSPTLTATDWFKKFLKRKQVLTGEIKSTESYAD
Ga0268266_104114231	3300028379	Switchgrass Rhizosphere	SEADLHCETSHAMRDALAEIERLQSEVADLQHTKFDGGLSNLSPTLTASATDWFKKFLKRKQLLTGEIKSTESYTD
Ga0307291_11423211	3300028707	Soil	SEADLHRETSHALRDALVEIERLQSEAADLQHTKFDRGLSNLSPTLTASATDWFKNFLKRKQVLTGEIKGTKSYAD
Ga0307322_100770582	3300028710	Soil	LHRETSHALRDALAEIERLQSEVRDLQHTKFGGLSNLSPTLSASATDWFKKFLKRKQVLTGEIKDTESYAD
Ga0307303_101752571	3300028713	Soil	LAEIGRLRPEAADLQHTKFDKGLSNLPPALTAWATWFTRLLERKQVLTGEKVKGRKSHAD
Ga0307311_102287481	3300028716	Soil	SHALRDALVEIERLQSEAADLQHTKFDGGLSNLSPTLTASATDWFKKFLKRKQVLTGEIKGTESYAD
Ga0307311_102335751	3300028716	Soil	RETSHALRDALAEIERLQSEVADLQHTKFDRGLSNLSPTLTASATDWFKNFLKRKQVLTGEIKGTESYAD
Ga0307319_101623481	3300028722	Soil	GEPLSEAADLQHTKFDGGLSNLSPTLTASATDWFKKFLKRKQVLTGEIKGTESYAD
Ga0307319_101773751	3300028722	Soil	HRETSHALRDALGEIERLQSEAADLQHTKFDRGLSNSPTLTASATDWFKKFLERKQVLTGEIKGTESYAD
Ga0307280_101110001	3300028768	Soil	SHALRDALAEIERLQSEAADLQHTKFDRGLSNLSPTLTASATDWFKSFLKRKRVLTGEIKGTESYAD
Ga0307288_100709081	3300028778	Soil	LSEAADLQHTKFDGGLSNLSPTLTASATDWFKKFLKRKQVLTGEIKGTESYAD
Ga0307282_100520521	3300028784	Soil	DLQHTKFDGGPSNLSPTLTASATDWFKKFLKRKQVLTGEIKGTESYAD
Ga0307282_101272771	3300028784	Soil	ALSEIERLRSEADLHRETSHALRDALGEIERLQSEAADLQHTKFDRGLSNSPTLTASATDWFKKFLERKQVLTGEIKGTESYAD
Ga0307323_100396721	3300028787	Soil	RLRSDVDLHRETSNALRDALAEIGRLQSEAADLQHTKFDKGLSNLAPALTAWATDWFTRLLERKQVLTGEKVKGRKSHAD
Ga0307287_103670161	3300028796	Soil	DLHRETSNALRDALAEIGRLQPEAADLQHTKFDKGLSNLPPALTAWATWFTRLLERKQVLTGEKVKGRKSHAD
Ga0307503_100740862	3300028802	Soil	HALREAVAEIERLQSEVADLQHTTFDGGLSNLSPMLTASATDWFKNFLKRKQVLTGKIKGTESHAD
Ga0307305_103559892	3300028807	Soil	TSHALRDAFVEIERLQSEAADLQHTKFDGGLSNLSPTLTASATDWFKKFLKRKQVLTGEIKGTESYAD
Ga0307310_104153961	3300028824	Soil	SEADLHRETSHALRDALVEIERLQSEAADLQHTKFGRGSNSPTLTASATDWFKKFLKRKQVLTGEIKGTESYAD
Ga0307312_109720121	3300028828	Soil	DLQHTKFDGGLSNLSPTLSASATDWFKKFLKRKQVLTGEIKDTESYAD
Ga0307286_100339341	3300028876	Soil	TSHALRDALVEIERLQSEAADLQHTKFDRGLSNLSPTLTASATDWFKNFLKRKQVLTGEIKGTESYAD
Ga0307286_101935801	3300028876	Soil	DLHRETSHALRDALGEIERLQSEAADLQHTKFDRGLSNSPTLTASATDWFKKFLERKQVLTGEIKGTESYAD
Ga0307308_100648653	3300028884	Soil	HRETSHALRDALAEIGRLRPEAADLQHTKFDKGLSNLPPALTAWATWFTRLLERKQVLTGEKVKGRKSHAD
Ga0307308_101068381	3300028884	Soil	LQSEAADLQHTKFDRGLSNSPTLTASATDWFKKFLERKQVLTGEIKGTESYAD
Ga0307308_104382211	3300028884	Soil	QHTKFDGGLSNLSPTLSASATDWFKKFLKRKQVLTGEIKGTESYAD
Ga0307304_100186751	3300028885	Soil	HALRDALVEIERLQSEAADLQHTKFDGGLSNLSPTLSASATDWFKKFLKRKQVLTGEIKGTESYAD
Ga0308198_10914112	3300030904	Soil	DLHRETSHALRDALAEIERLQSEAADLQHTKFDRGLSNSPTLTASATDWFKKFLERKQVFTGEIKGTESHAD
Ga0308155_10145072	3300030987	Soil	VVGCSDKSGEPLSEAADLQHTKFDGGLSNLSPTLTASATDWFKKFLKRKQVLTGEIKGTESHAD
Ga0308197_101841881	3300031093	Soil	EIERLRSEADLHRETSHALRDALAEIERLQSEAADLQHTKFDRGLSNSPTLTASATDWFKKFLERKQVLTGEIKGTKSYAD
Ga0308187_104334061	3300031114	Soil	LHRETSHALRDALGEIERLQSEAADLQHTKFDRGLSNSPTLTASATDWFKKFLERKQVLTGEIKGTESYAD
Ga0307500_102713421	3300031198	Soil	RDALAEIERLQSEVADLQHTTFDGGLSNLSPMLTASATDWFKNFLKRKQVLTGKIKGTESHAD
Ga0307497_106238891	3300031226	Soil	SEIERLRSEADLHRETSHALRDAVAEIERLQSEVADLQHTTFDGGLSNLSPMLTASATDWFKNFLKRKQVLTGKIKGTESHAD
Ga0307471_1040181731	3300032180	Hardwood Forest Soil	PCEGEGGHRETSHAMRDALAEIERLQSEVADLQHTKFGGLSNLSPTLTASATDWFKKFLKRKQVLTGKIKGTESYAD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F106012

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign