NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F105999

Metagenome / Metatranscriptome Family F105999

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F105999
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 44 residues
Representative Sequence MKCDEIRERMPDVAAGFSEPTADEGQHLASCGECAEHLKAMR
Number of Associated Samples 91
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 0.00 %
% of genes from short scaffolds (< 2000 bps) 0.00 %
Associated GOLD sequencing projects 85
AlphaFold2 3D model prediction Yes
3D model pTM-score0.62

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (100.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil
(12.000 % of family members)
Environment Ontology (ENVO) Unclassified
(27.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(54.000 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78
1JGI12635J15846_103794162
2Ga0062384_1006400541
3Ga0062389_1039877222
4Ga0058891_14540641
5Ga0058897_111447512
6Ga0062589_1012328601
7Ga0068966_14217002
8Ga0068958_12999652
9Ga0068927_13298792
10Ga0072325_12859452
11Ga0070711_1015116592
12Ga0070734_100974273
13Ga0070734_102811811
14Ga0070733_107366651
15Ga0070732_101704861
16Ga0070732_102871882
17Ga0068857_1010375242
18Ga0070762_106824952
19Ga0075291_10632682
20Ga0075029_1000484271
21Ga0075029_1006953942
22Ga0075029_1008181022
23Ga0075019_105559342
24Ga0075015_1001145801
25Ga0075030_1007647572
26Ga0070715_102506571
27Ga0075021_109870802
28Ga0102924_12658782
29Ga0105237_106280612
30Ga0116105_12420962
31Ga0126379_124524302
32Ga0126381_1007195311
33Ga0138534_11104301
34Ga0138594_10171112
35Ga0138595_10424131
36Ga0138576_12471522
37Ga0138579_13040342
38Ga0137390_112192011
39Ga0181531_102782881
40Ga0181535_101820653
41Ga0181519_100807391
42Ga0137409_109926211
43Ga0134072_101780632
44Ga0182034_114400822
45Ga0181511_12152122
46Ga0187802_102190602
47Ga0187818_101851391
48Ga0187824_103987482
49Ga0187809_103335672
50Ga0187819_102689402
51Ga0187817_110028602
52Ga0187782_100932941
53Ga0187782_101801091
54Ga0187889_104847511
55Ga0187871_107095322
56Ga0187858_102547431
57Ga0187765_106573002
58Ga0187770_110158512
59Ga0187800_11681972
60Ga0182025_10231431
61Ga0193726_11118471
62Ga0210396_101121994
63Ga0210393_108886171
64Ga0210385_101917973
65Ga0210385_103018461
66Ga0210383_111462721
67Ga0210394_116780302
68Ga0213879_102593351
69Ga0182009_103313751
70Ga0213852_13430762
71Ga0242654_100601182
72Ga0242654_103915902
73Ga0224545_10225402
74Ga0247551_1011902
75Ga0207685_103927392
76Ga0207646_111194332
77Ga0207726_10216481
78Ga0207780_10443562
79Ga0209333_11101322
80Ga0209040_100719111
81Ga0209060_105429791
82Ga0209167_100880183
83Ga0209624_105535302
84Ga0209006_107183921
85Ga0209526_104848262
86Ga0189899_1045861
87Ga0265338_100229961
88Ga0302221_101254573
89Ga0311340_101530824
90Ga0307496_100652312
91Ga0307476_104170612
92Ga0307474_109371271
93Ga0307477_101696632
94Ga0307479_106626282
95Ga0307479_115626751
96Ga0311301_108550051
97Ga0311301_110173132
98Ga0335075_107353111
99Ga0326726_121787772
100Ga0370492_0306072_1_150
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 44.29%    β-sheet: 0.00%    Coil/Unstructured: 55.71%
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Variant

510152025303540MKCDEIRERMPDVAAGFSEPTADEGQHLASCGECAEHLKAMRSequenceα-helicesβ-strandsCoilSS Conf. scoreDisordered Regions
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.62
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy


Visualization
Unclassified
100.0%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Watersheds
Peatland
Bog Forest Soil
Bog
Peatland
Freshwater Sediment
Iron-Sulfur Acid Spring
Watersheds
Soil
Soil
Vadose Zone Soil
Tropical Forest Soil
Bulk Soil
Grasslands Soil
Surface Soil
Peatlands Soil
Soil
Soil
Soil
Hardwood Forest Soil
Soil
Untreated Peat Soil
Rice Paddy Soil
Peatland
Tropical Peatland
Permafrost
Tropical Forest Soil
Forest Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Soil
Palsa
Peat Soil
Corn Rhizosphere
Corn Rhizosphere
Rhizosphere
4.0%3.0%3.0%6.0%7.0%3.0%7.0%12.0%8.0%5.0%4.0%7.0%4.0%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12635J15846_1037941623300001593Forest SoilMKCNEVRERMPDVAAGFNEPTTDEGKHLESCGECAE
Ga0062384_10064005413300004082Bog Forest SoilMKCNCDEIRERMPEVAAGFDAPTADENEHLADCTACAEKLKEMRATMALLDE
Ga0062389_10398772223300004092Bog Forest SoilMKCDEVRERMPDVAAGLSQATTEESRHLSGCTGCAGQLEEFRRTMA
Ga0058891_145406413300004104Forest SoilMKCEEIRERVLDVAAGRSEPTKEESTHLASCTACAQQWKS
Ga0058897_1114475123300004139Forest SoilMKCEEIRERVLDVAAGRSEPTKEESAHLASCDACALQLKS
Ga0062589_10123286013300004156SoilMKCEQVRERMPDVAAGLSEATAAESSHLASCTGCAEQFKAMQETMTLLDEW
Ga0068966_142170023300004476Peatlands SoilVAERVKEEVVMNCNEIRERMPEVAAGFSETTADESKHLESCGACAEELKA
Ga0068958_129996523300004609Peatlands SoilMKCEEIRERMPDVAAGLSQPTAEEGQHLASCAACAEQLKAMSATMALLD
Ga0068927_132987923300004610Peatlands SoilMKCDEIRERMPDVAAGFSEPTADEGQHLASCGECAEHLKAMRATMALL
Ga0072325_128594523300004972Peatlands SoilMNCEKIHERMPDVASGLSEFTAEESQHLARCKGCAEQLAAM
Ga0070711_10151165923300005439Corn, Switchgrass And Miscanthus RhizosphereMKCEEIRERMPDVAAGFSDITSGESDHLANCIACSKQLKTM
Ga0070734_1009742733300005533Surface SoilMKCEEIREKMIDVAAGVSQTTAEENNHLATCATCAEQL
Ga0070734_1028118113300005533Surface SoilMKCEEIRERMPDVAAGLSQPTTEDSNHLASCSACA
Ga0070733_1073666513300005541Surface SoilMKCDEIRERMPEVAAGFGEFTADEGKHLTSCGACTEKLKEIRATVALL
Ga0070732_1017048613300005542Surface SoilMKCDEIRERMPEVAAGFSPITAEEGQHLDNCVNCAEHLKSLRATMAL
Ga0070732_1028718823300005542Surface SoilMNCDEIRERMPEVTAGFGELTADEDKHLASCDACTKQWKEMRAT
Ga0068857_10103752423300005577Corn RhizosphereMKCEQLRERMPDVAAGLSEATAAESSHLAGCPSCAEQFKAMQETM
Ga0070762_1068249523300005602SoilMKCEEIRERMPEVAAGFSEPTVEEGKHLESCGACTEQLKAMRSTMALLD
Ga0075291_106326823300005884Rice Paddy SoilMKCEDIRERMPDVAAGVTQPTSAESNHLASCTSCADQLKAMRETMSLLDQW
Ga0075029_10004842713300006052WatershedsMKCDEIRERMLDVAAGLREPTAQESNHLASCSACAEQLK
Ga0075029_10069539423300006052WatershedsMKCDEIRERMPEVAAGLAEPTAEEGQHLAGCAACAEQLK
Ga0075029_10081810223300006052WatershedsMNCNEIRDRMPDVAAGFSEPTADESNHLKSCGACAEEMKALQATM
Ga0075019_1055593423300006086WatershedsMNCQEIRERMPEVAAGFGDLTAEESKHVESCGGCAEQMKAMRQTMAVLDEWQ
Ga0075015_10011458013300006102WatershedsMNCDEIRERMPEVAAGFGEPTADESKHLATCVACAEQLKA
Ga0075030_10076475723300006162WatershedsMNCNQIRERMPEVAAGFSEPTVEENKHLESCGACAEQLKAM
Ga0070715_1025065713300006163Corn, Switchgrass And Miscanthus RhizosphereMNCKEIRERMPDVAAGFSAPTADERKHLDSCGNCAEQLKGMQ
Ga0075021_1098708023300006354WatershedsMKYDCNEIRERMPDVAAGFNALTTDENQHLANCAGCA
Ga0102924_126587823300007982Iron-Sulfur Acid SpringMKCDEIRERMPEVAAGLSPITLEEGQHLESGVNCAEHLKSLRATMALLDEWRAPEPAIRRAA
Ga0105237_1062806123300009545Corn RhizosphereMKCDDIRERMPDVAAGVSQPTSAESNHLASCTSCADQLKAMRETMS
Ga0116105_124209623300009624PeatlandMRVKGEVVMNCNEIRERMPEVAAGFSDATADENKHLESCGACTEELKAM
Ga0126379_1245243023300010366Tropical Forest SoilMKCEEIRERMPDVAAGYSAPTADESSHLAGCTSCAEQLKGMRATLSL
Ga0126381_10071953113300010376Tropical Forest SoilMKCNEIVERIPDVAAAFSNPTVEESAHLAACSACAEKLKAMRAT
Ga0138534_111043013300011061Peatlands SoilMKCDEIRERMPDVAAGFSEPTADEGQHLASCGECAEHLKAMRATMALLDEWQ
Ga0138594_101711123300011067Peatlands SoilMKCDEIRERMPDVAAGFSEPTADEGQHLASCGECAEHLKAMRA
Ga0138595_104241313300011071Peatlands SoilMNCNEIRERMPEVAAGFSETTADESKHLKSCGACAEELKG
Ga0138576_124715223300011088Peatlands SoilMKCNCEEIRERMPDVAAGFDALTADESQHLTGCTACTG
Ga0138579_130403423300011090Peatlands SoilMNCNEIRERMPEVAAGFSETTADESKHLESCGACAEELKGMRATMALLDEW
Ga0137390_1121920113300012363Vadose Zone SoilMNCNEIRERMPDVAAGFGEPTADEGKHLESCGACAEQLKAM
Ga0181531_1027828813300014169BogMNCNEIRERMPDVAAGFSEATPDDGKHLETCAACAE
Ga0181535_1018206533300014199BogMNCNEIRERMPDVAAGFSEATPDDGKHLETCAACAEALKGMKATMAV
Ga0181519_1008073913300014658BogMKCDEIRERMPEVAAGFGELTADESNHLASCNTCEQQLKSMRAT
Ga0137409_1099262113300015245Vadose Zone SoilMKYDCNDIRERMPDVAAGFNALTTDESQHLASCAGCTEQLKS
Ga0134072_1017806323300015357Grasslands SoilMKCEQLRERMPDVAAGLSEATAAESSHLASCISCAEQF
Ga0182034_1144008223300016371SoilMKCEEIRERMPDVAAGFSELTTEESNHLAGCAACAEQLKGMR
Ga0181511_121521223300016702PeatlandMNCNQVRERMPEVAAGFSEFTTDEGKHLESCGACAEEL
Ga0187802_1021906023300017822Freshwater SedimentMKCDEIRERMTDVAAGCSEFTADESSHLATCMGCAEQLK
Ga0187818_1018513913300017823Freshwater SedimentMNCEEIRERMPDVAAGLSQATAEEGQHLASCAACAEQLKAMSATMAL
Ga0187824_1039874823300017927Freshwater SedimentMKCEQLRERMPDVAVGLSEATAAENSHLASCTSCAEQF
Ga0187809_1033356723300017937Freshwater SedimentMKCDEIRERMPDVAAGLNQFTADENQHFESCAACAEQLKAMRATMTLLDDWHARE
Ga0187819_1026894023300017943Freshwater SedimentMKCDEIRQRIPDVAAGFSEATTEDSNHLASCGECAEKLKSMRA
Ga0187817_1100286023300017955Freshwater SedimentMKCEEIRERMVDEAAGLRPATEDESVHLASCAACAEQLNAMRA
Ga0187782_1009329413300017975Tropical PeatlandMKCDEIRERMPDVAAGFAELTVEDGQHLTSCQPCTAKLK
Ga0187782_1018010913300017975Tropical PeatlandMNNVLKCEEIRERMPDLAAGFGEATAGELEHLASCAA
Ga0187889_1048475113300018023PeatlandMKCEEIRERMPDVAAGLSQPTAEEGQHLASCAACAEQLRAMSATM
Ga0187871_1070953223300018042PeatlandMKCDEIRERMPEVAAGFGELTADESNHLASCSRCEEQLKSMR
Ga0187858_1025474313300018057PeatlandMNCNEIRERMPEVAAGFSDATADENKHLESCGACTEELKAMR
Ga0187765_1065730023300018060Tropical PeatlandMKCNEICERMADVAAGFGEFTADERSHLASCIGCAEQLKAMRSTMSLLDEW
Ga0187770_1101585123300018090Tropical PeatlandMKYSLNCDDIRDRMPDVAAGFSKPTTEESNHLASCSACTEQLKAMRATMTLLDEWQVPEP
Ga0187800_116819723300019278PeatlandVMKCNEIRERMADVAAGFGEFTADESTHLASCIGCA
Ga0182025_102314313300019786PermafrostMKCDEIRERMPDVAAGFSKPTIDEGMHLESCGTCAQEFEGVARDN
Ga0193726_111184713300020021SoilMNCNQIRERMPDVAAGFSEPTTVEGNHLESCSACAEELKA
Ga0210396_1011219943300021180SoilMNCNEIRERMPEVAAGFGDATADENKHLESCGACAE
Ga0210393_1088861713300021401SoilMNCAEIRERMPDVAAGFSEPAADENKHLESCPACAEQLKSMRATMALL
Ga0210385_1019179733300021402SoilMKCDEIRERMPEVAAGFSELTTDEGKHVESCGACTE
Ga0210385_1030184613300021402SoilMKEMKCNEIRERMPEVAAGFDKLTLDEGKHLESCAAC
Ga0210383_1114627213300021407SoilMNCNEIRERMPDVAAGFSELTADEGKHLESCGACAE
Ga0210394_1167803023300021420SoilMKCDEIRERMPEVAAGFGELRADESNHLASCSTCEEQLKSMRATMSLLDEWQVP
Ga0213879_1025933513300021439Bulk SoilMNCQEIRERMPEVAAGFDALTADESKHLESCGGCSEQWKGMRQ
Ga0182009_1033137513300021445SoilMKCEQLRERMPDVAAGLSEATAAESSHLAGCPSCAEQFKAMQET
Ga0213852_134307623300021858WatershedsLREAVMNCNEIRDRMPDVAAGFTQLTADEERHFGSCAACTEQLKSMRATM
Ga0242654_1006011823300022726SoilMNCDEIRERMPEVAAGFGEATLEEHKHLSSCADAPSN
Ga0242654_1039159023300022726SoilMGEKSLGEAVMKCDEIRERMLDVAAGFSQPTADEGKHLESCGTCAEDLRAMR
Ga0224545_102254023300022881SoilMKCDEIRERMPDVAAGFSKPTIDEGMHLESCGTCAQELKALRATMAVLDEWQTP
Ga0247551_10119023300023552SoilMNCNEIRERMPDVAAGFSEASPDDGKHLETCAACAEALKGMKATMAVL
Ga0207685_1039273923300025905Corn, Switchgrass And Miscanthus RhizosphereMNCKEIRERMPDVAAGFSAPTADERKHLDSCGNCAEQLKGMQATMA
Ga0207646_1111943323300025922Corn, Switchgrass And Miscanthus RhizosphereMKCEEIRERMPDVAAGFSEVTTEESNHLAGCSVCTEQ
Ga0207726_102164813300027045Tropical Forest SoilMKCDEIRERMPEVAAGFSELSADENQHLAGCQACAEQLKAMRSTMALLD
Ga0207780_104435623300027313Tropical Forest SoilMKCEEIRERMPDVAAGFSESTTEESNHLAGCAVCAEQLKGMRATMSLLDE
Ga0209333_111013223300027676Forest SoilMKCDEIRERMPDLAAGFSQPTRDEGKHMESCGACAQQLQALRAT
Ga0209040_1007191113300027824Bog Forest SoilMKCDEIRGRMPDVAAGFSQATAEENNHLATCEVCSEQLKAMRD
Ga0209060_1054297913300027826Surface SoilMKCEEIREKMIDVAAGVSQTTAEENNHLATCATCAEQ
Ga0209167_1008801833300027867Surface SoilMKCDEIRERMPDMAAGFGELTADEGNHLAICSAYGTTEIV
Ga0209624_1055353023300027895Forest SoilMKCDEIRERMPDVAAGLSQATTEENRHFSSCTGCAG
Ga0209006_1071839213300027908Forest SoilMKNNCDEIRERMPEVAAGFDAATAEESQHLATCTECTEKLKEMRSTMALLDEWQ
Ga0209526_1048482623300028047Forest SoilMKCNEIHEWMPDVAAGFSEPTPDESKHLESCGACAQQLKEMRATMTLLDG
Ga0189899_10458613300028445Peatlands SoilMKCDEIRERMPDVAAGFSEPTADEGQHLASCGECAEHLKAMR
Ga0265338_1002299613300028800RhizosphereMKCDEIRERIPDVAAGFSEPTADESQHLASCNDCAEQL
Ga0302221_1012545733300028806PalsaMKCDEIRERMPDVAAGFSEATAEESSHLAGCGACSEQLKAMQSTMALLDEWQTP
Ga0311340_1015308243300029943PalsaMNCNEIRERMPDVAAGFSAATLDDGKHLETCGACAEELKAMRATMALLDEWKV
Ga0307496_1006523123300031200SoilMKCQDIREKMSDVAAGFSEPTADESNHLATCNVCAEQLK
Ga0307476_1041706123300031715Hardwood Forest SoilMKCDEIRERMPDMAAGYSQPTGDEGEHLESCGDCAQELKAMRETMILLDEW
Ga0307474_1093712713300031718Hardwood Forest SoilMKCDEILERMPEVAAGFSELTTDEGKHVESCGACSEKLKAMRA
Ga0307477_1016966323300031753Hardwood Forest SoilMKCDEIRERMPDMAAGYSQPTGDEGEHLESCGDCAQELKA
Ga0307479_1066262823300031962Hardwood Forest SoilMTCNEIRERMPDVAAGLDQLTADESTHLASCKECAGKLGE
Ga0307479_1156267513300031962Hardwood Forest SoilMKCDEIRERMPDVAAGFCEPTADEGRHLESCGACAQQLKAMRATMALLDEWKVKEPS
Ga0311301_1085500513300032160Peatlands SoilMKCEEIRERMPDVAAGLSQPTAEEGQHLASCAACAEQLKAMSATMALL
Ga0311301_1101731323300032160Peatlands SoilLAKSVKGEVVMNCNEIRERMPEVAAGFSEPTADEAKHLENCGACAEQLKGM
Ga0335075_1073531113300032896SoilMKCDEIRERLPDVAAGLSQATAEETQHLSSCGGCADQLKE
Ga0326726_1217877723300033433Peat SoilMKCEEVRERMPDVAAGFSEPTADESQHLASCGECSEQLKAM
Ga0370492_0306072_1_1503300034282Untreated Peat SoilMNCDEIRERMPDVAAGFSEPTADENKHLESCAACVEQLTSMRATMALLDE


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