NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F105980

Metagenome / Metatranscriptome Family F105980

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F105980
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 44 residues
Representative Sequence MRVDINLATQPYEDARRFWLRWGGALVALGILTLLLLVMTVNGWI
Number of Associated Samples 90
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 100.00 %
% of genes near scaffold ends (potentially truncated) 7.00 %
% of genes from short scaffolds (< 2000 bps) 7.00 %
Associated GOLD sequencing projects 83
AlphaFold2 3D model prediction Yes
3D model pTM-score0.52

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (93.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(25.000 % of family members)
Environment Ontology (ENVO) Unclassified
(24.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(67.000 % of family members)



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Multiple Sequence Alignments

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Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.
1JGI12270J11330_100864103
2Ga0062389_1000049761
3Ga0062389_1003634701
4Ga0062389_1023431231
5Ga0062388_1005615342
6Ga0066677_102190941
7Ga0070706_1006759451
8Ga0070699_1017586691
9Ga0070732_102353812
10Ga0066670_101510221
11Ga0070762_101367963
12Ga0070740_102501592
13Ga0068851_100472443
14Ga0068863_1004113891
15Ga0066790_102209211
16Ga0075017_1008615482
17Ga0070715_104599092
18Ga0074054_113874231
19Ga0066660_110933571
20Ga0079221_100647273
21Ga0104322_1036931
22Ga0099828_105723801
23Ga0116222_12959101
24Ga0116221_15321321
25Ga0116216_107832642
26Ga0116217_109151032
27Ga0116223_100670641
28Ga0126383_130712232
29Ga0138594_10537452
30Ga0137391_108724541
31Ga0137389_102017913
32Ga0137376_105197362
33Ga0134041_12349282
34Ga0137398_106777131
35Ga0137359_107318451
36Ga0164302_105856922
37Ga0157378_104936612
38Ga0157378_108720441
39Ga0181531_102622482
40Ga0182015_103267792
41Ga0134083_100726681
42Ga0187801_100862602
43Ga0187864_103644411
44Ga0187766_104806341
45Ga0187784_111651572
46Ga0187771_118862741
47Ga0137408_11871531
48Ga0193730_10268961
49Ga0193726_10357283
50Ga0193733_10985381
51Ga0210407_101465103
52Ga0210403_101718223
53Ga0210403_103837771
54Ga0210401_102103293
55Ga0210396_1000601310
56Ga0210396_104692441
57Ga0210388_102431831
58Ga0210393_110412741
59Ga0210393_112825691
60Ga0210385_109441072
61Ga0210397_103927561
62Ga0210386_110173672
63Ga0210386_112489951
64Ga0210384_102314253
65Ga0210384_102879191
66Ga0210390_105067482
67Ga0210398_107889101
68Ga0210402_101470701
69Ga0210402_109527252
70Ga0210410_100444524
71Ga0210409_105086231
72Ga0222728_11247842
73Ga0207683_102970233
74Ga0209235_10542783
75Ga0209236_13074702
76Ga0257168_10795382
77Ga0209806_13259252
78Ga0208043_10440043
79Ga0208827_10120784
80Ga0209007_10254161
81Ga0209333_11703841
82Ga0209447_101531282
83Ga0209773_104851692
84Ga0209180_106439002
85Ga0209283_103636821
86Ga0209275_101013111
87Ga0209583_106830121
88Ga0209526_101914603
89Ga0257175_10347321
90Ga0310037_101180561
91Ga0310038_100064921
92Ga0310686_1004917751
93Ga0307469_105956272
94Ga0307469_109308502
95Ga0307477_105673842
96Ga0307473_104829351
97Ga0310913_101291411
98Ga0335079_109384722
99Ga0335076_105457511
100Ga0335077_107068132
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 41.10%    β-sheet: 0.00%    Coil/Unstructured: 58.90%
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Variant

51015202530354045MRVDINLATQPYEDARRFWLRWGGALVALGILTLLLLVMTVNGWIExtracel.Cytopl.Sequenceα-helicesβ-strandsCoilSS Conf. scoreTM segmentsTopol. domains
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Predicted 3D Structure

Structure Viewer

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.52
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
7.0%93.0%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Peatland
Bog Forest Soil
Bog
Freshwater Sediment
Watersheds
Soil
Soil
Vadose Zone Soil
Tropical Forest Soil
Grasslands Soil
Surface Soil
Peatlands Soil
Permafrost Soil
Agricultural Soil
Soil
Grasslands Soil
Soil
Hardwood Forest Soil
Soil
Tropical Peatland
Soil
Palsa
Soil
Forest Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Miscanthus Rhizosphere
6.0%5.0%9.0%11.0%3.0%25.0%4.0%3.0%3.0%3.0%3.0%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12270J11330_1008641033300000567Peatlands SoilMRIDINLATHPYEDARQFWFRWGGAMVALGIVTLGLLYFTFIGWLDARKDKALMR
Ga0062389_10000497613300004092Bog Forest SoilMRVNINLATQPYEDANRFWLRWGGALAALGLFTLILVYLTA
Ga0062389_10036347013300004092Bog Forest SoilMRVDINLASQPYEDARRFWLRWGGGLVALGTLTLLLLVITVNGWM
Ga0062389_10234312313300004092Bog Forest SoilMRVDINLASRPYEDAGPLWLRWGGALAALGLFTLILLYSALSGWA
Ga0062388_10056153423300004635Bog Forest SoilMRVDINLASQPYEDARLFWLRWGGALVALGVLTLLLLLITVNGWIGARKD
Ga0066677_1021909413300005171SoilMRVDINLATQPYQDARRFWLRWGGALVALGLLTLILLYSVL
Ga0070706_10067594513300005467Corn, Switchgrass And Miscanthus RhizosphereMRLDINLATHPYEDVGSFRLRWGGVLAGLGLLTLLLVYSAVAGWATAR
Ga0070699_10175866913300005518Corn, Switchgrass And Miscanthus RhizosphereMRVDINLASQPYQDARRFWLRWGGALVALGLLTLILLYSAITGWVSA
Ga0070732_1023538123300005542Surface SoilMRVDINLATQPYEDARRFWLRWGGALVALGILTLLLLVMTVNGWI
Ga0066670_1015102213300005560SoilMRIDINLATQPYQDARRFWMRWGVGLAGLGVFTLLLIYMTVMG
Ga0070762_1013679633300005602SoilMHVDINLATQPYEDARRFWFRWGGALVALGIVTLGLVYFTMLGWV
Ga0070740_1025015923300005607Surface SoilMRLDINLASQPYQDARRFWFQWGGALAIMGVVTVGLLHFTFLGWTGARKDRALM
Ga0068851_1004724433300005834Corn RhizosphereMRVDINLATHPYEDSGPLWLRWGGAVAALSLFTLILLYSA
Ga0068863_10041138913300005841Switchgrass RhizosphereMRVDINLATHPYEDSGPLWLRWGGAVAALSLFTLILLYSAVS
Ga0066790_1022092113300005995SoilMRVEINLGTRPYEDSRQFWVRWGGGLAALALVSLLLLIFTVLGW
Ga0075017_10086154823300006059WatershedsMRVDINLASRPYEDSGPLWVRWGGALAGLSLLTLILLY
Ga0070715_1045990923300006163Corn, Switchgrass And Miscanthus RhizosphereMRIDINLASRPYEDSSSVWVRWGGAMAILGLITIVLLY
Ga0074054_1138742313300006579SoilMRVDINLATHPYEDSGPLWLRWGGAVAALSLFTLILLYSAVSGWIAAG
Ga0066660_1109335713300006800SoilMRLDINLASQPYEDARQFWLRWGGALVAAGIFTLVLLIVTVSGWFNARRDRIK
Ga0079221_1006472733300006804Agricultural SoilMRVDINLATHPYEDSGPLWLRWGGAVAALSLFTLILLYSAVSGWI
Ga0104322_10369313300007819Permafrost SoilMRVDINLAAHPYEDLRLFWVRWGGVLGGLGVLLLALLFLN
Ga0099828_1057238013300009089Vadose Zone SoilMRVDINLATRPYEDSSSLLLRWGGALAALSLFTLVLL
Ga0116222_129591013300009521Peatlands SoilMRLDINLATQPYQDASRFWRLWGGALAGMILLTLVLVYTAI
Ga0116221_153213213300009523Peatlands SoilMRVDINLASQPYEDARRFWLRWGGALVALGILTLLLLTMTVNGWIGARKDRQLISQY
Ga0116216_1078326423300009698Peatlands SoilMRVDINLASQPYEDARLFWLRWGGGLAALGILTLLLLIITVNGWIGARK
Ga0116217_1091510323300009700Peatlands SoilMRVDINLASQPYEDARLFWLRWGGGLAALGILTLLLLIITVNGWIGAR
Ga0116223_1006706413300009839Peatlands SoilMRVDINLASQPYEDARRFWLRWGGGLVALGIMTLLLLLMTVNGGWPRAKIDN*
Ga0126383_1307122323300010398Tropical Forest SoilMRVDINLASQPYEDARLFWMRWGGALAAVGILTLLLLTLTVNGWIGARKD
Ga0138594_105374523300011067Peatlands SoilMRVDINLASQPYEDARRFWLRWGGALVALGILTLLLLTM
Ga0137391_1087245413300011270Vadose Zone SoilMRVDINLATRPYEDSSSLLLRWGGALAALSLFTLVL
Ga0137389_1020179133300012096Vadose Zone SoilMRVDINLATHPYEDVRRFWVRWGGALLGLGLLTLLLVYSALAGWLTARQD
Ga0137376_1051973623300012208Vadose Zone SoilMRIDINLATQPYEDSQQLWVRWGSGVAVIGLFTLMLL*
Ga0134041_123492823300012405Grasslands SoilMRIDINLATHPYQDARRFWRQWGLGLSALAILTLLLAY
Ga0137398_1067771313300012683Vadose Zone SoilMRVDINLATRPYEDSGPLWLRWGGALGALSLFTLILLYS
Ga0137359_1073184513300012923Vadose Zone SoilMRIDINLATHPYQDARRFWRQWGLGLSALAILTLLL
Ga0164302_1058569223300012961SoilMHVDINLATQPYQDARQFWLRWGGALVALGLLTLILVYSAL
Ga0157378_1049366123300013297Miscanthus RhizosphereMRVDINLATRPYEDSSSMWLRWGGALAALSLFTLVLLYMVIAGWA
Ga0157378_1087204413300013297Miscanthus RhizosphereMRVDINLASRPYEDSGPLWVRWGGALAGLSLFTLILLYTAL
Ga0181531_1026224823300014169BogMRVDINLASQPYEDARLFWLRWGGGLAALGVLTLLLLI
Ga0182015_1032677923300014495PalsaMRLDINLASHPYEDPRHFWLRWGGALAALVVLTLILVYSALAGWY
Ga0134083_1007266813300017659Grasslands SoilMRIDINLATQPYEDSQQLWVRWGSGVAVIGLFTLMLLYMVITGW
Ga0187801_1008626023300017933Freshwater SedimentMRVDINLASQPYEDARRFWLRWGGGLVALGIMTLLLLLMTVNGWMAARKDRQ
Ga0187864_1036444113300018022PeatlandMRVDINLASQPYEDAGRFWLRWGGALATLGVLTLLLVIMTVDGWIGARKD
Ga0187766_1048063413300018058Tropical PeatlandMRLDINLATQPYEDSQRFWLRWGSALAALGIVTIALLYL
Ga0187784_1116515723300018062Tropical PeatlandMRLDINLATQPYEDAERFWLRWGGGLAALGIVTIGLLY
Ga0187771_1188627413300018088Tropical PeatlandMRLDINLATHPYEDSRRFWFRWGGALAMLGILTGGLLFHV
Ga0137408_118715313300019789Vadose Zone SoilMRIDINLATHPYQDARRFWKQWGLGLSALGLLTLLL
Ga0193730_102689613300020002SoilMRVDINLATQPYQDARQFWLRWGGALVALSLLTLILVYSALTGWVS
Ga0193726_103572833300020021SoilMRVEINLGTLPYEDARQFWVRWGGGLAALILVSLLLLAYTAM
Ga0193733_109853813300020022SoilMRVDINLATQPYQDARRFWLRWGGALVALGLLTLILVYSALTGWVS
Ga0210407_1014651033300020579SoilMRVDINLATQPYEDARRFWFRWGGALAALGIVTLGLIYFTLLGWVTAAKDKGLI
Ga0210403_1017182233300020580SoilMRVDINLASQPYEDARQFWLRWGGGLVALGILTLLLLVMTVNGW
Ga0210403_1038377713300020580SoilMRVDINLATQPYEDSGSLWMRWGTALAVLGLITLVLLYSVLAGWAA
Ga0210401_1021032933300020583SoilMRVDINLATQRYEDLRSFWLRWGGPLAGLGLLTLVLLFS
Ga0210396_10006013103300021180SoilMRVDINLASQPYEDARRFWLRWGGGVLALGILTLLLLVMTVN
Ga0210396_1046924413300021180SoilMRVEINLATNPYEDARRFWFRWGGALVALGIVTLGLV
Ga0210388_1024318313300021181SoilMRVDINLASQPYEDARQFWLRWGGALVALGILTLSLLMMTVNG
Ga0210393_1104127413300021401SoilMRVDINLATQPYEDSGSLWMRWGTALAVLGLITLVLL
Ga0210393_1128256913300021401SoilMHVDINLATQPYEDARRFWFRWGGALVALGIVTLGLVYFTMLGWVTANKDKHVIGQNLHQ
Ga0210385_1094410723300021402SoilMRVDINLASQPYEDARLFWLRWGGGLVALGVLTLLLLII
Ga0210397_1039275613300021403SoilMRVDINLASQPYEDARQFWLRWGGALVALGILTLS
Ga0210386_1101736723300021406SoilMRVDINLATQPYEDSGSLWMRWGTALAVLGLITLVLLYSVLAGWA
Ga0210386_1124899513300021406SoilMRVDINLASQPYEDARQFWLRWGGGLVALGILTLLLLVMTVNGWIGAR
Ga0210384_1023142533300021432SoilMRVDINLATQPYEDSGSLWMRWGTALAVLGLITLVLLYSVLAGW
Ga0210384_1028791913300021432SoilMRVDINLASQPYEDARQFWLRWGGGLVALGILTLLLLVMTVNGWIGARKDRQLI
Ga0210390_1050674823300021474SoilMRVDINLASQPYEDARQFWLRWGGGLVALGILTSLLLVMTVNGWIAARKD
Ga0210398_1078891013300021477SoilMRVDINLASQPYEDARQFWLRWGGGLVALGILTLLLL
Ga0210402_1014707013300021478SoilMRVDINLASRPYEDARLFWLRWGGGLVALGILTLLLLVITVNGWIG
Ga0210402_1095272523300021478SoilMRVDINLATRPYEDSGPLWWRWGGALAALSLFTLILLYS
Ga0210410_1004445243300021479SoilMRVDINLASQPYEDARRFWLRWGGALAALGMLTLLLLIMTVNGWIGARKDRQLIRQYE
Ga0210409_1050862313300021559SoilMRVDINLATRPYEDSGPLWWRWGGALAALSLFTLILLYSALSGWAAAR
Ga0222728_112478423300022508SoilMRVDINLATQAYEDARRFWLRWGGGLVALGILTLLLLVMTVNGWIGARKD
Ga0207683_1029702333300026121Miscanthus RhizosphereMRVDINLATHPYEDSGPLWLRWGGAVAALSLFTLILLYSAV
Ga0209235_105427833300026296Grasslands SoilMHIDINLATHPYQDARRFWRQWGLGLSALAILTLLLAYT
Ga0209236_130747023300026298Grasslands SoilMRVDINLATHPYEDVRRFWVRWGGALLGLGLLTLLLV
Ga0257168_107953823300026514SoilMRVDINLASRPYEDSGPLWARWGGALAALALFTLILLYS
Ga0209806_132592523300026529SoilMHVDINLATQPYQDARRFWFRWGGALLALGLLTLILVYSTFTGW
Ga0208043_104400433300027570Peatlands SoilMRIDINLATHPYEDARQFWFRWGGAMVALGIVTLGLLYFT
Ga0208827_101207843300027641Peatlands SoilMRVDINLASQPYEDARRFWLRWGAALAALGILTLLLLSMTVNGWIAARKDRQLM
Ga0209007_102541613300027652Forest SoilMRVDINLASQPYEDARLFWLRWGGGLVALGILTLLLMMITVNGWIGARKDRQLIR
Ga0209333_117038413300027676Forest SoilMRVDINLATQPYEDARRFWFRWGGALVALGIVTLGLVYFTLLGWVTANK
Ga0209447_1015312823300027701Bog Forest SoilMRVNINLATQPYEDANRFWLRWGGALAALGLFTLILVYLTAAGWVSARRDREMTHE
Ga0209773_1048516923300027829Bog Forest SoilMRVDINLATHPYEDARRFWFRWGGALVALGIITVW
Ga0209180_1064390023300027846Vadose Zone SoilMRIDINLATHPYEDSGSLWLRWGGGLAALGLLTLILVY
Ga0209283_1036368213300027875Vadose Zone SoilMRVDINLATRPYEDSSSLLLRWGGALAALSLFTLVLLYMVLA
Ga0209275_1010131113300027884SoilMHVDINLATQPYEDARRFWFRWGGALVALGIVTLGLVYFTMLGWVTANK
Ga0209583_1068301213300027910WatershedsMRVDINLATQPYEDSGSLWMRWGTALAVLGLITLVLLYS
Ga0209526_1019146033300028047Forest SoilMRVDINLASRPYEDSRPLWVRWGGALAALALFTLILLYSALS
Ga0257175_103473213300028673SoilMRIDINLATHPYEDSGSLWLRWGGGLAALGLLTLILVYSAMA
Ga0310037_1011805613300030494Peatlands SoilMRVDINLASQPYEDARQFWLRWGGGLVALGILTLLLLVMTVNGWIG
Ga0310038_1000649213300030707Peatlands SoilMRVDINLASQPYEDARRFWLRWGGALVALGILTLLLLTMTVNGWIGARKDRQLISQYEA
Ga0310686_10049177513300031708SoilMRVDINLASQPYEDARLFWLRWGGGLVALGILTLLLLIITVN
Ga0307469_1059562723300031720Hardwood Forest SoilMRIDINLATHPYEDSGSLWLRWGGGLAALGLFTLILVYS
Ga0307469_1093085023300031720Hardwood Forest SoilMRVDINLASQPYQDARRFWLRWGGALVALGLLTLILLYSA
Ga0307477_1056738423300031753Hardwood Forest SoilMRVDINLATHPYEDARLFWMRWGGGLLALSIMTLLLLLITVNGWIGA
Ga0307473_1048293513300031820Hardwood Forest SoilMRVDINLASQPYQDARRFWLRWGGALVALGLLTLILLYSAITGWVS
Ga0310913_1012914113300031945SoilMRLDINLATQPYEDSQRFWLRWGSALAALGVVTVALLYLTLMGWLGARKDR
Ga0335079_1093847223300032783SoilMRIDINLASRPYEDARRFWFRWGGALAALGLITLWLIFFT
Ga0335076_1054575113300032955SoilMRIDINLASLQYQDSRRFWVRWGGGVAALGIFTLILVYFALWGLVTA
Ga0335077_1070681323300033158SoilMRLDINLATQPYEDSQRFWLHWGSALAALGIVTVALLYLTLMGWLGARK


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