Basic Information | |
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Family ID | F105948 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 100 |
Average Sequence Length | 67 residues |
Representative Sequence | MRLSLIFGICAAFLFALHTGVSLAQTSYTGYKSPKSETACYKCCRRWQARMGWSPNRLEVCTQKCMIGTGRNC |
Number of Associated Samples | 85 |
Number of Associated Scaffolds | 100 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 100.00 % |
% of genes near scaffold ends (potentially truncated) | 0.00 % |
% of genes from short scaffolds (< 2000 bps) | 1.00 % |
Associated GOLD sequencing projects | 80 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.46 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (97.000 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere (10.000 % of family members) |
Environment Ontology (ENVO) | Unclassified (33.000 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (61.000 % of family members) |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | Yes | Secondary Structure distribution: | α-helix: 50.50% β-sheet: 0.00% Coil/Unstructured: 49.50% | Feature Viewer |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.46 |
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Pfam ID | Name | % Frequency in 100 Family Scaffolds |
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PF01914 | MarC | 5.00 |
PF09865 | DUF2092 | 3.00 |
PF00884 | Sulfatase | 3.00 |
PF00890 | FAD_binding_2 | 2.00 |
PF06035 | Peptidase_C93 | 2.00 |
PF00528 | BPD_transp_1 | 2.00 |
PF03466 | LysR_substrate | 2.00 |
PF00300 | His_Phos_1 | 1.00 |
PF12710 | HAD | 1.00 |
PF13505 | OMP_b-brl | 1.00 |
PF02518 | HATPase_c | 1.00 |
PF11367 | DUF3168 | 1.00 |
PF11742 | DUF3302 | 1.00 |
PF12681 | Glyoxalase_2 | 1.00 |
PF01764 | Lipase_3 | 1.00 |
PF00656 | Peptidase_C14 | 1.00 |
PF02630 | SCO1-SenC | 1.00 |
PF00211 | Guanylate_cyc | 1.00 |
PF05135 | Phage_connect_1 | 1.00 |
PF00111 | Fer2 | 1.00 |
PF00230 | MIP | 1.00 |
PF07045 | DUF1330 | 1.00 |
PF06147 | DUF968 | 1.00 |
PF11578 | DUF3237 | 1.00 |
PF04392 | ABC_sub_bind | 1.00 |
PF13356 | Arm-DNA-bind_3 | 1.00 |
COG ID | Name | Functional Category | % Frequency in 100 Family Scaffolds |
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COG2095 | Small neutral amino acid transporter SnatA, MarC family | Amino acid transport and metabolism [E] | 5.00 |
COG3672 | Predicted transglutaminase-like protein | Posttranslational modification, protein turnover, chaperones [O] | 2.00 |
COG0580 | Glycerol uptake facilitator or related aquaporin (Major Intrinsic protein Family) | Carbohydrate transport and metabolism [G] | 1.00 |
COG1225 | Peroxiredoxin | Posttranslational modification, protein turnover, chaperones [O] | 1.00 |
COG1999 | Cytochrome oxidase Cu insertion factor, SCO1/SenC/PrrC family | Posttranslational modification, protein turnover, chaperones [O] | 1.00 |
COG2114 | Adenylate cyclase, class 3 | Signal transduction mechanisms [T] | 1.00 |
COG2984 | ABC-type uncharacterized transport system, periplasmic component | General function prediction only [R] | 1.00 |
COG4249 | Uncharacterized conserved protein, contains caspase domain | General function prediction only [R] | 1.00 |
COG5470 | Uncharacterized conserved protein, DUF1330 family | Function unknown [S] | 1.00 |
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Name | Rank | Taxonomy | Distribution |
Unclassified | root | N/A | 97.00 % |
All Organisms | root | All Organisms | 3.00 % |
Visualization |
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Scaffold | Taxonomy | Length | IMG/M Link |
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3300000580|AF_2010_repII_A01DRAFT_1000071 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | 11358 | Open in IMG/M |
3300005330|Ga0070690_100096075 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae | 1958 | Open in IMG/M |
3300005713|Ga0066905_100046547 | All Organisms → cellular organisms → Bacteria | 2620 | Open in IMG/M |
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Habitat | Taxonomy | Distribution |
Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 10.00% |
Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere | 9.00% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 7.00% |
Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 7.00% |
Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 6.00% |
Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere | 6.00% |
Populus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere | 4.00% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 3.00% |
Tropical Peatland | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland | 3.00% |
Tropical Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil | 3.00% |
Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere | 3.00% |
Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 3.00% |
Watersheds | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds | 2.00% |
Terrestrial Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil | 2.00% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil | 2.00% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil | 2.00% |
Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil | 2.00% |
Corn Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere | 2.00% |
Switchgrass Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere | 2.00% |
Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 2.00% |
Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere | 2.00% |
Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere | 2.00% |
Sediment | Environmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment | 1.00% |
Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 1.00% |
Switchgrass Rhizosphere | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere | 1.00% |
Agricultural Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil | 1.00% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 1.00% |
Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil | 1.00% |
Agricultural Soil | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil | 1.00% |
Peat Soil | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil | 1.00% |
Corn Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere | 1.00% |
Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere | 1.00% |
Corn, Switchgrass And Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere | 1.00% |
Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere | 1.00% |
Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 1.00% |
Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere | 1.00% |
Rhizosphere Soil | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil | 1.00% |
Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere | 1.00% |
Visualization |
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Taxon OID | Sample Name | Habitat Type | IMG/M Link |
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3300000580 | Forest soil microbial communities from Amazon forest - 2010 replicate II A01 | Environmental | Open in IMG/M |
3300000955 | Soil microbial communities from Great Prairies - Iowa, Native Prairie soil | Environmental | Open in IMG/M |
3300004114 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5 | Environmental | Open in IMG/M |
3300005093 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks | Environmental | Open in IMG/M |
3300005162 | Soil and rhizosphere microbial communities from Laval, Canada - mgLAB | Environmental | Open in IMG/M |
3300005294 | Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil | Environmental | Open in IMG/M |
3300005329 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG | Environmental | Open in IMG/M |
3300005330 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG | Environmental | Open in IMG/M |
3300005331 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG | Host-Associated | Open in IMG/M |
3300005332 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly) | Environmental | Open in IMG/M |
3300005341 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG | Environmental | Open in IMG/M |
3300005356 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG | Host-Associated | Open in IMG/M |
3300005406 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG | Environmental | Open in IMG/M |
3300005435 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG | Environmental | Open in IMG/M |
3300005436 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG | Environmental | Open in IMG/M |
3300005535 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG | Environmental | Open in IMG/M |
3300005546 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG | Environmental | Open in IMG/M |
3300005548 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG | Host-Associated | Open in IMG/M |
3300005617 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 | Host-Associated | Open in IMG/M |
3300005713 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2) | Environmental | Open in IMG/M |
3300005764 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2) | Environmental | Open in IMG/M |
3300005840 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 | Host-Associated | Open in IMG/M |
3300005842 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 | Host-Associated | Open in IMG/M |
3300005843 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 | Host-Associated | Open in IMG/M |
3300006057 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012 | Environmental | Open in IMG/M |
3300006163 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG | Environmental | Open in IMG/M |
3300006172 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014 | Environmental | Open in IMG/M |
3300006175 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG | Environmental | Open in IMG/M |
3300006806 | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 | Environmental | Open in IMG/M |
3300006852 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 | Host-Associated | Open in IMG/M |
3300006871 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 | Host-Associated | Open in IMG/M |
3300006880 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 | Host-Associated | Open in IMG/M |
3300006881 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 | Host-Associated | Open in IMG/M |
3300006953 | Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
3300009098 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG | Host-Associated | Open in IMG/M |
3300009176 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG | Host-Associated | Open in IMG/M |
3300010046 | Tropical forest soil microbial communities from Panama - MetaG Plot_36 | Environmental | Open in IMG/M |
3300010400 | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2 | Environmental | Open in IMG/M |
3300010403 | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3 | Environmental | Open in IMG/M |
3300011119 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG | Host-Associated | Open in IMG/M |
3300012500 | Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.4.old.080610 | Host-Associated | Open in IMG/M |
3300012511 | Unplanted soil (control) microbial communities from North Carolina - M.Soil.8.old.080610_10 | Environmental | Open in IMG/M |
3300012896 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S118-311C-2 | Environmental | Open in IMG/M |
3300012951 | Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG | Environmental | Open in IMG/M |
3300012958 | Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG | Environmental | Open in IMG/M |
3300012960 | Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG | Environmental | Open in IMG/M |
3300012961 | Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG | Environmental | Open in IMG/M |
3300013102 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG | Host-Associated | Open in IMG/M |
3300013296 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG | Host-Associated | Open in IMG/M |
3300013308 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG | Host-Associated | Open in IMG/M |
3300014968 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG | Host-Associated | Open in IMG/M |
3300015371 | Combined assembly of cpr5 and col0 rhizosphere and soil | Host-Associated | Open in IMG/M |
3300015372 | Soil combined assembly | Host-Associated | Open in IMG/M |
3300015373 | Combined assembly of cpr5 rhizosphere | Host-Associated | Open in IMG/M |
3300015374 | Col-0 rhizosphere combined assembly | Host-Associated | Open in IMG/M |
3300017944 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_10_20_MG | Environmental | Open in IMG/M |
3300018058 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG | Environmental | Open in IMG/M |
3300018060 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG | Environmental | Open in IMG/M |
3300022880 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S106-311C-6 | Environmental | Open in IMG/M |
3300022892 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S169-409R-5 | Environmental | Open in IMG/M |
3300025223 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S2 (SPAdes) | Host-Associated | Open in IMG/M |
3300025904 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) | Host-Associated | Open in IMG/M |
3300025906 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) | Environmental | Open in IMG/M |
3300025907 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
3300025916 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) | Environmental | Open in IMG/M |
3300025920 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
3300025923 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
3300025938 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) | Host-Associated | Open in IMG/M |
3300025941 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
3300025960 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
3300025972 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
3300026035 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) | Host-Associated | Open in IMG/M |
3300026319 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes) | Environmental | Open in IMG/M |
3300026452 | Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 7-17 PU4 | Environmental | Open in IMG/M |
3300026995 | Soil and rhizosphere microbial communities from Laval, Canada - mgLAB (SPAdes) | Environmental | Open in IMG/M |
3300027873 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes) | Host-Associated | Open in IMG/M |
3300028379 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
3300031231 | Coassembly Site 11 (all samples) - Champenoux / Amance forest | Environmental | Open in IMG/M |
3300031820 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515 | Environmental | Open in IMG/M |
3300032174 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05 | Environmental | Open in IMG/M |
3300032180 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515 | Environmental | Open in IMG/M |
3300032205 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05 | Environmental | Open in IMG/M |
3300033412 | Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC | Environmental | Open in IMG/M |
3300033433 | Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN | Environmental | Open in IMG/M |
3300034818 | Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_3 | Host-Associated | Open in IMG/M |
Geographical Distribution | |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
AF_2010_repII_A01DRAFT_100007111 | 3300000580 | Forest Soil | MRSSLVFGICAAFFFTLHTGISFAQTGYTGYKSPKSERACYKCCRRWQARMGWSPNRLDVCTQKCVIGTARNC* |
JGI1027J12803_1014757212 | 3300000955 | Soil | MRVSLIFGICATFLFTLHTGISLAQTGYTGFKNPKSERACYKCCRRNQIKMGLPPDQVELCTQRCMIGTARNC* |
Ga0062593_1010861352 | 3300004114 | Soil | QMRLSLIFAICATFLFTLHTGISLAQTGYTGYKNQKSERACYKCCRRNQIKMGLPADQVELCTQRCMIGTARNC* |
Ga0062594_1016447752 | 3300005093 | Soil | MRLSLIFAICATFLFTLHTGISLAQTGYTGYKNQKSERACYKCCRRNQIKMGLPADQVELCTQRCMIGTARNC* |
Ga0066814_100168512 | 3300005162 | Soil | MRLSLIFGICATFLFTLHTGISLAQTGYKSPKSERACYKCCRRNQIKMGLPPAQVELCTQRCMIGTARNC* |
Ga0065705_103380393 | 3300005294 | Switchgrass Rhizosphere | MRLSLIFGICATLLFTLHTGISLAQPGYTGSTGYTGYKSPKSGRACYKCCRRNQIKMG |
Ga0070683_1001142363 | 3300005329 | Corn Rhizosphere | MRLSLVFAICTAFLFALHADVSLAQTNYSGYNSPKSERACYKCCRRWQARMGWSANRLDVCTQKCMIGTGRNC* |
Ga0070690_1000960755 | 3300005330 | Switchgrass Rhizosphere | MRLSLIFAICATFLFILHTGISLAQTGYTGYKNQKSERACYKCCRRNQIKMGLPADQVELCTQRCMIGTARNC* |
Ga0070690_1001555652 | 3300005330 | Switchgrass Rhizosphere | MRLSLVFAICTAFFFALHADVSLAQTNYSGYNSPKSERACYKCCRRWQARMGWSANRLDVCTQKCMIGTGRNC* |
Ga0070670_1000456494 | 3300005331 | Switchgrass Rhizosphere | MRLSLVFAICTAFFFALRADVSLAQTNYSGYNSPKSERACYKCCRRWQARMGWSANRLDVCTQKCMIGTGRNC* |
Ga0066388_1001819904 | 3300005332 | Tropical Forest Soil | MRWLLIFGICVAFLFTLHTGTSLAQTGYSGYKSPKSERACYKCCRRWQAKMGWSPNRLNVCTEKCMIGTARNC* |
Ga0070691_102900552 | 3300005341 | Corn, Switchgrass And Miscanthus Rhizosphere | MRLSLIFAICATFLFTLHTGISLAQTGYTGYKNQKSERACYKCCRRNQIKMGLPADQVQLCTQRCMIGTARNC* |
Ga0070691_106911511 | 3300005341 | Corn, Switchgrass And Miscanthus Rhizosphere | MRLSLVFAICTAFFFALHADVSLAQTNYSGYNSPKSERACYKCCRRWQARMGWSA |
Ga0070674_1012700072 | 3300005356 | Miscanthus Rhizosphere | MRLSLIFAICATFLFTLHTGISLAQTGYTGYKNQKSERACYKCCRRNQIKMGLPADQVELCTQRCMI |
Ga0070703_100021771 | 3300005406 | Corn, Switchgrass And Miscanthus Rhizosphere | MRMSLIFGICAAFLFTLHTGVSHAQTSYTGYKSPKSETACYKCCRRWQARMGWSGARLEA |
Ga0070714_1008608242 | 3300005435 | Agricultural Soil | ICATFLFTLHTGISLAQTGYTGYKNQKSERACYKCCRRNQIKMGLPADQVELCTQRCMIGTARNC* |
Ga0070713_1006333601 | 3300005436 | Corn, Switchgrass And Miscanthus Rhizosphere | MRLSLIFAICATFLFTLHTGISLAQTGYTGYKNQKSERACYKCCRRNQIKMGLP |
Ga0070684_1001215531 | 3300005535 | Corn Rhizosphere | MRLSLVFAICTAFFFALRADVSLAQTNYSGYNSPKSERACYKCCRRWQARMGWSANR |
Ga0070696_1003508961 | 3300005546 | Corn, Switchgrass And Miscanthus Rhizosphere | MRLSLIFGICATFLFTLHTNVSHAQTSYTGYKSPKSETACYKCCRRWQA |
Ga0070665_1008133181 | 3300005548 | Switchgrass Rhizosphere | MRLSLVFAICTAFFFALRADVSLAQTNYSGYNSPKSERACYKCCRRWQARMGWS |
Ga0068859_1000029594 | 3300005617 | Switchgrass Rhizosphere | MRMSLIFGICAAFLFTLHTGVSHAQTSYTGYRSPKSETACYKCCRRWQARMGWSGARLEACSQKCMIGTGRNC* |
Ga0068859_1017450751 | 3300005617 | Switchgrass Rhizosphere | MRLSLVFAICTAFFFALHADVSLAQTNYSGYNSPKSERACYKCCRRWQARMGWSANRLDVCTQ |
Ga0066905_1000465473 | 3300005713 | Tropical Forest Soil | MRLSLVLGICAAFLFTLDTGSSFAQTSFTGYKGTKSETACYKCCRRWQTRMGWSPARLEACSQKCMTGTGRNC* |
Ga0066903_1004219812 | 3300005764 | Tropical Forest Soil | MRLSVIFGICAVILFALHPDVSSAQTTYRGYTGYNAPKSERACYKCCRRWQTRMGWSPSRLDACAEKCMIGTGRNC* |
Ga0068870_100002189 | 3300005840 | Miscanthus Rhizosphere | MRMSLIFGICAAFLFTLHTGVSHAQTSYTGYKSPKSETACYKCCRRWQARMGWSGARLEACSQKCMIGTGRNC* |
Ga0068858_1006884302 | 3300005842 | Switchgrass Rhizosphere | MRLSLVFAICTAFFFALHADVSLAQTNYSGYNSPKSERACYKCCRRWQARMGWSANRLDVCTQKCMI |
Ga0068860_1002500061 | 3300005843 | Switchgrass Rhizosphere | MRLSLVFAICTAFLFALHADVSLAQTNYSGYNSPKSERACYKCCRRWQARMGWSANRL |
Ga0075026_1001334212 | 3300006057 | Watersheds | MRLSLIFGICATFLFTLHTGISLAQTGYTGYKSPKSATVCYKCCRRNQIKMGLPADQVELCTQRCMIGTARNC* |
Ga0070715_109410211 | 3300006163 | Corn, Switchgrass And Miscanthus Rhizosphere | MRLSLIFAICATFLFTLHTGISLAQTGYTGYKNQKSERACYKCCRRNQIKMGLPADQVELCTQR |
Ga0075018_106278111 | 3300006172 | Watersheds | MRLSLIVGICATFLFTLHAGISHAQTGYTGYKSPKSETACYQCCRRWQTKMGWSPCRLEVCQQKCMIGTGRNC* |
Ga0070712_1008481442 | 3300006175 | Corn, Switchgrass And Miscanthus Rhizosphere | MRLSIIFGICAAFLFTLHTGISLAQTQYSGYKSPKSERACYKCCKRNQIKMGLPAGQVELCTQRCMIGTARNC* |
Ga0070712_1012261701 | 3300006175 | Corn, Switchgrass And Miscanthus Rhizosphere | MRLSLIFGICAAFLFTLHTGVSLAQTNYTGYKTPKSEQACYKCCRRWQARMGWSPNRLDVCTQKC |
Ga0079220_101896322 | 3300006806 | Agricultural Soil | MRLSLIFGAVFLFTLHTDISFAQTTHPGYTSYNAAKSEKACYKCCRRWQARMGWSPARLEACSQKCMIGTGRNC* |
Ga0075433_109193732 | 3300006852 | Populus Rhizosphere | MRLSLIFGICATFLFTLHTGISLAQTEYTGFKSPKSERACYKCCRRNQIKMGLPPDQVELCTQRCMIGTARNC* |
Ga0075434_1016073182 | 3300006871 | Populus Rhizosphere | MRLSLVFAICTAFLFALHADVSLAQTNYSGYNSPKSERACYKCCRRWQARMGWSANRLD |
Ga0075429_1019209671 | 3300006880 | Populus Rhizosphere | MRLSLIFGICATFLFTLHTGISLAQPGYTGYTGYTGYKSPKSGRACYQCCRRNQIKMGLPPDQVGVCVERCRIGTARNC* |
Ga0068865_1004909422 | 3300006881 | Miscanthus Rhizosphere | MRLSLIFAICATFLFTLHTGISLARTGYTGYKNQKSERACYKCCRRNQIKMGLPADQVELCTQRCMIGTARNC* |
Ga0074063_140486181 | 3300006953 | Soil | MRLSLIFGICATFLFTLQTGISLAQTGYKSPKSERACYKCCRRNQIKMGLPADQVELCTQRCMIG |
Ga0105245_113667651 | 3300009098 | Miscanthus Rhizosphere | MRLSLVFAICTAFFFALRADVSLAQTNYSGYNSPKSERACYKCCRRWQARMG |
Ga0105242_100663451 | 3300009176 | Miscanthus Rhizosphere | MRLSLVFAICTAFFFALHADVSLAQTNYSGYNSPKSERACYKCCRRWQARMGWSANRLDVCTQKCMIG |
Ga0126384_114483291 | 3300010046 | Tropical Forest Soil | MRLSLIVGLCTAFLFALHADVSLAQPNYSGYNSPKSERACYKCCRRWQARMGWSPSR |
Ga0134122_132763112 | 3300010400 | Terrestrial Soil | MRWSLVCGICVAFLFTLHTGTSLAQTGYTGYKSPKSERACYKCCRRWQARMGW |
Ga0134123_107025391 | 3300010403 | Terrestrial Soil | MRLSLIFGICAAFLFTLHTNVSHAQTSYTGYKSPKSETACYKCCRRWQARMGWSGARLEACSQKCMIGTGRNC* |
Ga0105246_108900242 | 3300011119 | Miscanthus Rhizosphere | MRLSLVFAICTAFFFALRADVSLAQTNYSGYNSPKSERACYKCCRRWQARMGWSANRL |
Ga0157314_10045612 | 3300012500 | Arabidopsis Rhizosphere | MRLSLVFAVCTAFLFALHADVSLAQTNYSGYNSPKSERACYKCCRRWQ |
Ga0157332_10589861 | 3300012511 | Soil | MRLSLVFAVCTAFLFALHADVSLAQTNYSGYNSPKSERACYKCCRRWQARMGWSANRLDVCTQKCMIGTGRNC* |
Ga0157303_100000594 | 3300012896 | Soil | MRMSLIFGICAAFLFTLHTGVSHAQTSYTGYKSPKSETACYKCCRRRTARMGWSGARLEACSQKCMIGTGRNC* |
Ga0164300_100435212 | 3300012951 | Soil | MRLSLVFAICTAFFFALRADVSLAQTNYSGYNSPKSERACYKCCRRWQARMGWSANRLDVCTQKCMIGTGRNF* |
Ga0164299_102822291 | 3300012958 | Soil | MRLPLIFGICATFLFTLQTGISLAQTGYPGSTGYKSPKSERACYKCCRRNQIKMGLPADQVELCTQRCMIGTARNC* |
Ga0164301_102497681 | 3300012960 | Soil | MRLSLIFAICATFLFTLHTGISLAQTGYTGYKNQKSERACYKCCRRNQIKMGL |
Ga0164302_101791471 | 3300012961 | Soil | MRLSLIFAICATFLFTLHTGISLAQTGYTGYKNQKSERACYKCCRRNQIKMGLPADKVELCTQRCMIGTARNC* |
Ga0157371_100222631 | 3300013102 | Corn Rhizosphere | MRMSLIFGICAAFLFTLHTGVSHAQTSYTGYRSPKSETACYKCCRRWQARMGWSGARLEACSQKCMIGTG |
Ga0157374_117407822 | 3300013296 | Miscanthus Rhizosphere | MRMSLIFEICAAFLFTLHTGASLAQTGYTGYKSPKSERACYKCCRRWQARMGWSPNRL |
Ga0157375_119064401 | 3300013308 | Miscanthus Rhizosphere | MRLSLVFAICTAFLFALHADVSLAQTNYSGYNSPKSERACYKCCRRWQARMGWSANR |
Ga0157379_106777742 | 3300014968 | Switchgrass Rhizosphere | MRLSLVFAICTAFLFALHADVSLAQTNYSGYNSPKSERACYKCCRRWQARMGW |
Ga0132258_101591922 | 3300015371 | Arabidopsis Rhizosphere | MRLPLIFGICATFLFTLHTGISLAQTGYPGSTGYKSPKSERACYKCCRRNQIKMGLPADQVELCTQRCMIGTARNC* |
Ga0132258_103421641 | 3300015371 | Arabidopsis Rhizosphere | MRLLLILGICAPLLFTLHTGTSLAQTGYTGYKSPKSARACYNCCRRNQIKMGLPPDQVELCVQRCTIGTARNC* |
Ga0132258_111026142 | 3300015371 | Arabidopsis Rhizosphere | MRLSLIVGSCATFLFTLHTGISHAQTGYTGYKSPKSETACYQCCRRWQTRMGWSPSRLEVCQQKCMIGTGRNC* |
Ga0132258_139688981 | 3300015371 | Arabidopsis Rhizosphere | MRWSLICGICVAFLFTLHTGTSFSQTSYSGYKSPKSERACYKCCRRWQARMGWSPNRLDV |
Ga0132256_1008888281 | 3300015372 | Arabidopsis Rhizosphere | MRLSLVFTICTAFLFALHADVSLAQTNYSGYNSPKSERACYKCCRRWQARMGWSANRLD |
Ga0132256_1015232791 | 3300015372 | Arabidopsis Rhizosphere | MRLLLILGICAPLLFTLHTGTSLAQTGYTGYKSPKSARACYNCCRRNQIKMGLPP |
Ga0132257_1009970771 | 3300015373 | Arabidopsis Rhizosphere | MRLLLILGICAPLLFTLHTGTSLAQTGYTGYKSPKSARACYNCCRRNQIKMGLPPDQVELCVQRCTIGTARNCWQQLLSWRR* |
Ga0132257_1028018681 | 3300015373 | Arabidopsis Rhizosphere | MRMPLIFGICAAFLFTLHTSVSHAQTSYTGYKSPKSETACYKCCRRWQARMGWSGARLEA |
Ga0132255_1001350993 | 3300015374 | Arabidopsis Rhizosphere | MRLSLIFGICATFLFTPHTGTSLAQTGYTGYKSQKSERACYKCCRRNQIKMGLPADQVELCTQRCMIGTARNC* |
Ga0132255_1034285032 | 3300015374 | Arabidopsis Rhizosphere | MRWSLICGICVAFLFTLHTGTSFSQTSYSGYKSPKSERACYKCCRRWQARMGWSPNRLDVCTQKRVIGTARNC* |
Ga0132255_1054324821 | 3300015374 | Arabidopsis Rhizosphere | MRLSLIVGSCATFLFTLHTGISHAQTGYTGYKSPKSETACYQCCRRWQTRMGWSPSRLEVCQQKCMI |
Ga0187786_100580603 | 3300017944 | Tropical Peatland | MRLSLIFAICAAFLFALNADVSLAQTNYSGYNSPKSERACYKCCRRWQARMGWSANRLDVCTQKCMIGTARNC |
Ga0187766_114169301 | 3300018058 | Tropical Peatland | MRLSLIFAICAAFLFALNADVSLAQTNYSGYNSPKSERACYKCCRRWQARMGWSANR |
Ga0187765_101196112 | 3300018060 | Tropical Peatland | MRLSLIFAICAAFFFALNADVSLAQTNYSGYNSPKSERACYKCCRRWQARMGWSANRLDVCTQKCMIGTARNC |
Ga0247792_10003045 | 3300022880 | Soil | MRMSLIFGICAAFLFTLHTGVSHAQTSYTGYRSPKSETACYKCCRRWQARMGWSGARLEACSQKCMIGTGRNC |
Ga0247753_10005944 | 3300022892 | Soil | MRMSLIFGICAAFLFTLHTGVSHAQTSYTGYKSPKSETACYKCCRRWQARMGWSGARLEACSQKCMIGTGRNC |
Ga0207672_10108761 | 3300025223 | Corn, Switchgrass And Miscanthus Rhizosphere | MRMSLIFGICAAFLFTLHTGVSHAQTSYTGYRSPKSETACYKCCRRWQARMG |
Ga0207647_106930301 | 3300025904 | Corn Rhizosphere | GGDMRLSLVFAICTAFFFALHADVSLAQTNYSGYNSPKSERACYKCCRRWQARMGWSANRLDVCTQKCMIGTGRNC |
Ga0207699_107116741 | 3300025906 | Corn, Switchgrass And Miscanthus Rhizosphere | MRLSLVFAICTAFFFALHADVSLAQTNYSGYNSPKSERACYKCCRRWQARMGWSANRLDV |
Ga0207645_101845394 | 3300025907 | Miscanthus Rhizosphere | MRLSLVFAICTAFFFALHADVSLAQTNYSGYNSPKSERACYKCCRRWQARMGWSANRLDVCTQKCMIGTGRNC |
Ga0207663_106751702 | 3300025916 | Corn, Switchgrass And Miscanthus Rhizosphere | MRLSLVFAICTAFLFALHADVSLAQTNYSGYNSPKSERACYKCCRRWQARMGWSANRLDV |
Ga0207649_104710133 | 3300025920 | Corn Rhizosphere | MRLSLIFAICATFLFTLHTGISLAQTGYTGYKNQKSERACYKCCRRNQIKMGLPADQ |
Ga0207681_105113151 | 3300025923 | Switchgrass Rhizosphere | MRLSLVFAICTAFLFALHADVSLAQTNYSGYNSPKSERACYKCCRRWQARMGWSANRLDVCTQ |
Ga0207704_115275162 | 3300025938 | Miscanthus Rhizosphere | MRLSLVFAICTAFLFALRADVSLAQTNYSGYNSPKSERACYKCCRRWQARMGWSA |
Ga0207711_108740001 | 3300025941 | Switchgrass Rhizosphere | MRLSLVFAICTAFFFALRADVSLAQTNYSGYNSPKSERACYKCCRRWQARMGWSANRLDVCTKK |
Ga0207651_101400855 | 3300025960 | Switchgrass Rhizosphere | MRLSLVFAICTAFLFALHADVSLAQTNYSGYNSPKSERACYKCCRRWQARMGWSANRLDVCTQKCMIGTGRNC |
Ga0207668_114763721 | 3300025972 | Switchgrass Rhizosphere | MRLSLIFGICAAFLFTLHTGVSLAQTNYTGYKTPKSEQACYKCCRRWQARMGWSPNRLDVCTQK |
Ga0207703_106526291 | 3300026035 | Switchgrass Rhizosphere | MRLSLVFAICTAFFFALRADVSLAQTNYSGYNSPKSERACYKCCRRWQARMGWSANRLDVCTQKCMIGT |
Ga0207703_108546502 | 3300026035 | Switchgrass Rhizosphere | MRLSLVFAICTAFFFALHADVSLAQTNYSGYNSPKSERACYKCCRRWQARMGWSANRLDVCTQKCMIGTG |
Ga0209647_10572103 | 3300026319 | Grasslands Soil | MRLSLFFGLCSAFLFTLHTGMSLAQTGYTGYKSPKSERACYKCCRRNQIKMGLPADQVELCTQRCMIGTARNC |
Ga0256821_10023692 | 3300026452 | Sediment | MRLSLIFGICAVFLFTLHTDISFAQTTYQGYTSYNAAKSEKACYKCCRRWQARMGWSPARLEACSQKCMIGTGRNC |
Ga0208761_10141792 | 3300026995 | Soil | MRLSLIFGICATFLFTLHTGISLAQTGYKSPKSERACYKCCRRNQIKMGLPPAQVELCTQRCMIGTARNC |
Ga0209814_104775501 | 3300027873 | Populus Rhizosphere | MRLSLIFGICATFLFTLHTGISLAQPGYTGYTGYTGYKSPKSGRACYQCCRRNQIKMGLPPDQVGVCVERCRIGTARNC |
Ga0268266_107082552 | 3300028379 | Switchgrass Rhizosphere | MRLSLVFAICTAFFFALRADVSLAQTNYSGYNSPKSERACYKCCRRWQARMGWSANRLD |
Ga0170824_1164624854 | 3300031231 | Forest Soil | MRLSLIFGICATFLFTLQTGISLAQTGYTGYKSPKSERACYKCCKRNQIKMGLPADQVELCTQRCMIGTARNC |
Ga0307473_100455933 | 3300031820 | Hardwood Forest Soil | MRMPLIFGICAAFLFTLHTNVSHAQTSYTGYKSPKSETACYKCCRRWQARMGWSGARLEACSQKCMIGTGRNC |
Ga0307470_101193472 | 3300032174 | Hardwood Forest Soil | MRLSLIFGICAAFLFALHTGVSLAQTSYTGYKSPKSETACYKCCRRWQARMGWSPNRLEVCTQKCMIGTGRNC |
Ga0307470_104650202 | 3300032174 | Hardwood Forest Soil | MRLSLIVGICATFLFALHAGISHAQTGYTGNKGPKSERACYQCCRRWQSRMGLSPSRVEVCQQKCMIGTGRN |
Ga0307471_1002701183 | 3300032180 | Hardwood Forest Soil | MRLSLIFGICAAFLFTLHTGISLAQTSYTGFKTPKSESACYKCCRRWQARMGWSGARLEACSQKCMIGTGRNC |
Ga0307471_1003575052 | 3300032180 | Hardwood Forest Soil | MRLSLIVGICATFLFALHAGISHAQTGYTGNKGPKSERACYQCCRRWQARMGWSPSRVEVCQQKCMIGTGRNC |
Ga0307471_1005100921 | 3300032180 | Hardwood Forest Soil | MRMPLIFGICAAFLFTLHTGVSLAQTNYTGYKTPKSEQACYKCCRRWQARMGWSPNRLDVCTQKCVIGTGRNC |
Ga0307472_1017774931 | 3300032205 | Hardwood Forest Soil | MRLSLIVGICATFLFTLHAGISHAQTGYTGNKGPKSERACYQCCRRWQTRMGWSPSRLEVCQQK |
Ga0310810_101504312 | 3300033412 | Soil | MRLPLIFGICATFLFTLQTGISLAQTGYPGSTGYKSPKSERACYKCCRRNQIKMGLPADQVELCTQRCMIGTARNC |
Ga0326726_100957782 | 3300033433 | Peat Soil | MRLSLVFGICATFLFTLHTGTSLAQTGNTGYKSPKSERACYKCCKRNQIKMGLPADQVELCTQRCMIGTARNC |
Ga0373950_0036344_1_168 | 3300034818 | Rhizosphere Soil | MRLSLVFAICTAFLFALHADVSLAQTNYSGYNSPKSERACYKCCRRWQARMGWSAN |
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