NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F105948

Metagenome / Metatranscriptome Family F105948

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F105948
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 67 residues
Representative Sequence MRLSLIFGICAAFLFALHTGVSLAQTSYTGYKSPKSETACYKCCRRWQARMGWSPNRLEVCTQKCMIGTGRNC
Number of Associated Samples 85
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 100.00 %
% of genes near scaffold ends (potentially truncated) 0.00 %
% of genes from short scaffolds (< 2000 bps) 1.00 %
Associated GOLD sequencing projects 80
AlphaFold2 3D model prediction Yes
3D model pTM-score0.46

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (97.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere
(10.000 % of family members)
Environment Ontology (ENVO) Unclassified
(33.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(61.000 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 50.50%    β-sheet: 0.00%    Coil/Unstructured: 49.50%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.46
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF01914MarC 5.00
PF09865DUF2092 3.00
PF00884Sulfatase 3.00
PF00890FAD_binding_2 2.00
PF06035Peptidase_C93 2.00
PF00528BPD_transp_1 2.00
PF03466LysR_substrate 2.00
PF00300His_Phos_1 1.00
PF12710HAD 1.00
PF13505OMP_b-brl 1.00
PF02518HATPase_c 1.00
PF11367DUF3168 1.00
PF11742DUF3302 1.00
PF12681Glyoxalase_2 1.00
PF01764Lipase_3 1.00
PF00656Peptidase_C14 1.00
PF02630SCO1-SenC 1.00
PF00211Guanylate_cyc 1.00
PF05135Phage_connect_1 1.00
PF00111Fer2 1.00
PF00230MIP 1.00
PF07045DUF1330 1.00
PF06147DUF968 1.00
PF11578DUF3237 1.00
PF04392ABC_sub_bind 1.00
PF13356Arm-DNA-bind_3 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG2095Small neutral amino acid transporter SnatA, MarC familyAmino acid transport and metabolism [E] 5.00
COG3672Predicted transglutaminase-like proteinPosttranslational modification, protein turnover, chaperones [O] 2.00
COG0580Glycerol uptake facilitator or related aquaporin (Major Intrinsic protein Family)Carbohydrate transport and metabolism [G] 1.00
COG1225PeroxiredoxinPosttranslational modification, protein turnover, chaperones [O] 1.00
COG1999Cytochrome oxidase Cu insertion factor, SCO1/SenC/PrrC familyPosttranslational modification, protein turnover, chaperones [O] 1.00
COG2114Adenylate cyclase, class 3Signal transduction mechanisms [T] 1.00
COG2984ABC-type uncharacterized transport system, periplasmic componentGeneral function prediction only [R] 1.00
COG4249Uncharacterized conserved protein, contains caspase domainGeneral function prediction only [R] 1.00
COG5470Uncharacterized conserved protein, DUF1330 familyFunction unknown [S] 1.00


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A97.00 %
All OrganismsrootAll Organisms3.00 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000580|AF_2010_repII_A01DRAFT_1000071All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales11358Open in IMG/M
3300005330|Ga0070690_100096075All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae1958Open in IMG/M
3300005713|Ga0066905_100046547All Organisms → cellular organisms → Bacteria2620Open in IMG/M



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere10.00%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere9.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil7.00%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil7.00%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere6.00%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere6.00%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere4.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil3.00%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland3.00%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil3.00%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere3.00%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere3.00%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds2.00%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil2.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil2.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil2.00%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil2.00%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere2.00%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere2.00%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere2.00%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere2.00%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere2.00%
SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment1.00%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil1.00%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere1.00%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil1.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil1.00%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil1.00%
Agricultural SoilEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil1.00%
Peat SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil1.00%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere1.00%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere1.00%
Corn, Switchgrass And Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere1.00%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere1.00%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere1.00%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere1.00%
Rhizosphere SoilHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil1.00%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere1.00%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000580Forest soil microbial communities from Amazon forest - 2010 replicate II A01EnvironmentalOpen in IMG/M
3300000955Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300004114Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5EnvironmentalOpen in IMG/M
3300005093Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All BlocksEnvironmentalOpen in IMG/M
3300005162Soil and rhizosphere microbial communities from Laval, Canada - mgLABEnvironmentalOpen in IMG/M
3300005294Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk SoilEnvironmentalOpen in IMG/M
3300005329Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaGEnvironmentalOpen in IMG/M
3300005330Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaGEnvironmentalOpen in IMG/M
3300005331Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaGHost-AssociatedOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005341Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaGEnvironmentalOpen in IMG/M
3300005356Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaGHost-AssociatedOpen in IMG/M
3300005406Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaGEnvironmentalOpen in IMG/M
3300005435Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaGEnvironmentalOpen in IMG/M
3300005436Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaGEnvironmentalOpen in IMG/M
3300005535Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaGEnvironmentalOpen in IMG/M
3300005546Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaGEnvironmentalOpen in IMG/M
3300005548Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaGHost-AssociatedOpen in IMG/M
3300005617Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2Host-AssociatedOpen in IMG/M
3300005713Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005840Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2Host-AssociatedOpen in IMG/M
3300005842Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2Host-AssociatedOpen in IMG/M
3300005843Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2Host-AssociatedOpen in IMG/M
3300006057Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012EnvironmentalOpen in IMG/M
3300006163Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaGEnvironmentalOpen in IMG/M
3300006172Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014EnvironmentalOpen in IMG/M
3300006175Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaGEnvironmentalOpen in IMG/M
3300006806Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100EnvironmentalOpen in IMG/M
3300006852Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2Host-AssociatedOpen in IMG/M
3300006871Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3Host-AssociatedOpen in IMG/M
3300006880Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3Host-AssociatedOpen in IMG/M
3300006881Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2Host-AssociatedOpen in IMG/M
3300006953Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300009098Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaGHost-AssociatedOpen in IMG/M
3300009176Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaGHost-AssociatedOpen in IMG/M
3300010046Tropical forest soil microbial communities from Panama - MetaG Plot_36EnvironmentalOpen in IMG/M
3300010400Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2EnvironmentalOpen in IMG/M
3300010403Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3EnvironmentalOpen in IMG/M
3300011119Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaGHost-AssociatedOpen in IMG/M
3300012500Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.4.old.080610Host-AssociatedOpen in IMG/M
3300012511Unplanted soil (control) microbial communities from North Carolina - M.Soil.8.old.080610_10EnvironmentalOpen in IMG/M
3300012896Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S118-311C-2EnvironmentalOpen in IMG/M
3300012951Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MGEnvironmentalOpen in IMG/M
3300012958Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MGEnvironmentalOpen in IMG/M
3300012960Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MGEnvironmentalOpen in IMG/M
3300012961Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MGEnvironmentalOpen in IMG/M
3300013102Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaGHost-AssociatedOpen in IMG/M
3300013296Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaGHost-AssociatedOpen in IMG/M
3300013308Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaGHost-AssociatedOpen in IMG/M
3300014968Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaGHost-AssociatedOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300017944Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_10_20_MGEnvironmentalOpen in IMG/M
3300018058Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MGEnvironmentalOpen in IMG/M
3300018060Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MGEnvironmentalOpen in IMG/M
3300022880Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S106-311C-6EnvironmentalOpen in IMG/M
3300022892Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S169-409R-5EnvironmentalOpen in IMG/M
3300025223Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025904Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025906Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025907Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025916Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025920Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025923Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025938Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025941Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025960Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025972Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026035Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026319Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)EnvironmentalOpen in IMG/M
3300026452Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 7-17 PU4EnvironmentalOpen in IMG/M
3300026995Soil and rhizosphere microbial communities from Laval, Canada - mgLAB (SPAdes)EnvironmentalOpen in IMG/M
3300027873Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)Host-AssociatedOpen in IMG/M
3300028379Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031820Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515EnvironmentalOpen in IMG/M
3300032174Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300033412Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NCEnvironmentalOpen in IMG/M
3300033433Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MNEnvironmentalOpen in IMG/M
3300034818Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_3Host-AssociatedOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
AF_2010_repII_A01DRAFT_1000071113300000580Forest SoilMRSSLVFGICAAFFFTLHTGISFAQTGYTGYKSPKSERACYKCCRRWQARMGWSPNRLDVCTQKCVIGTARNC*
JGI1027J12803_10147572123300000955SoilMRVSLIFGICATFLFTLHTGISLAQTGYTGFKNPKSERACYKCCRRNQIKMGLPPDQVELCTQRCMIGTARNC*
Ga0062593_10108613523300004114SoilQMRLSLIFAICATFLFTLHTGISLAQTGYTGYKNQKSERACYKCCRRNQIKMGLPADQVELCTQRCMIGTARNC*
Ga0062594_10164477523300005093SoilMRLSLIFAICATFLFTLHTGISLAQTGYTGYKNQKSERACYKCCRRNQIKMGLPADQVELCTQRCMIGTARNC*
Ga0066814_1001685123300005162SoilMRLSLIFGICATFLFTLHTGISLAQTGYKSPKSERACYKCCRRNQIKMGLPPAQVELCTQRCMIGTARNC*
Ga0065705_1033803933300005294Switchgrass RhizosphereMRLSLIFGICATLLFTLHTGISLAQPGYTGSTGYTGYKSPKSGRACYKCCRRNQIKMG
Ga0070683_10011423633300005329Corn RhizosphereMRLSLVFAICTAFLFALHADVSLAQTNYSGYNSPKSERACYKCCRRWQARMGWSANRLDVCTQKCMIGTGRNC*
Ga0070690_10009607553300005330Switchgrass RhizosphereMRLSLIFAICATFLFILHTGISLAQTGYTGYKNQKSERACYKCCRRNQIKMGLPADQVELCTQRCMIGTARNC*
Ga0070690_10015556523300005330Switchgrass RhizosphereMRLSLVFAICTAFFFALHADVSLAQTNYSGYNSPKSERACYKCCRRWQARMGWSANRLDVCTQKCMIGTGRNC*
Ga0070670_10004564943300005331Switchgrass RhizosphereMRLSLVFAICTAFFFALRADVSLAQTNYSGYNSPKSERACYKCCRRWQARMGWSANRLDVCTQKCMIGTGRNC*
Ga0066388_10018199043300005332Tropical Forest SoilMRWLLIFGICVAFLFTLHTGTSLAQTGYSGYKSPKSERACYKCCRRWQAKMGWSPNRLNVCTEKCMIGTARNC*
Ga0070691_1029005523300005341Corn, Switchgrass And Miscanthus RhizosphereMRLSLIFAICATFLFTLHTGISLAQTGYTGYKNQKSERACYKCCRRNQIKMGLPADQVQLCTQRCMIGTARNC*
Ga0070691_1069115113300005341Corn, Switchgrass And Miscanthus RhizosphereMRLSLVFAICTAFFFALHADVSLAQTNYSGYNSPKSERACYKCCRRWQARMGWSA
Ga0070674_10127000723300005356Miscanthus RhizosphereMRLSLIFAICATFLFTLHTGISLAQTGYTGYKNQKSERACYKCCRRNQIKMGLPADQVELCTQRCMI
Ga0070703_1000217713300005406Corn, Switchgrass And Miscanthus RhizosphereMRMSLIFGICAAFLFTLHTGVSHAQTSYTGYKSPKSETACYKCCRRWQARMGWSGARLEA
Ga0070714_10086082423300005435Agricultural SoilICATFLFTLHTGISLAQTGYTGYKNQKSERACYKCCRRNQIKMGLPADQVELCTQRCMIGTARNC*
Ga0070713_10063336013300005436Corn, Switchgrass And Miscanthus RhizosphereMRLSLIFAICATFLFTLHTGISLAQTGYTGYKNQKSERACYKCCRRNQIKMGLP
Ga0070684_10012155313300005535Corn RhizosphereMRLSLVFAICTAFFFALRADVSLAQTNYSGYNSPKSERACYKCCRRWQARMGWSANR
Ga0070696_10035089613300005546Corn, Switchgrass And Miscanthus RhizosphereMRLSLIFGICATFLFTLHTNVSHAQTSYTGYKSPKSETACYKCCRRWQA
Ga0070665_10081331813300005548Switchgrass RhizosphereMRLSLVFAICTAFFFALRADVSLAQTNYSGYNSPKSERACYKCCRRWQARMGWS
Ga0068859_10000295943300005617Switchgrass RhizosphereMRMSLIFGICAAFLFTLHTGVSHAQTSYTGYRSPKSETACYKCCRRWQARMGWSGARLEACSQKCMIGTGRNC*
Ga0068859_10174507513300005617Switchgrass RhizosphereMRLSLVFAICTAFFFALHADVSLAQTNYSGYNSPKSERACYKCCRRWQARMGWSANRLDVCTQ
Ga0066905_10004654733300005713Tropical Forest SoilMRLSLVLGICAAFLFTLDTGSSFAQTSFTGYKGTKSETACYKCCRRWQTRMGWSPARLEACSQKCMTGTGRNC*
Ga0066903_10042198123300005764Tropical Forest SoilMRLSVIFGICAVILFALHPDVSSAQTTYRGYTGYNAPKSERACYKCCRRWQTRMGWSPSRLDACAEKCMIGTGRNC*
Ga0068870_1000021893300005840Miscanthus RhizosphereMRMSLIFGICAAFLFTLHTGVSHAQTSYTGYKSPKSETACYKCCRRWQARMGWSGARLEACSQKCMIGTGRNC*
Ga0068858_10068843023300005842Switchgrass RhizosphereMRLSLVFAICTAFFFALHADVSLAQTNYSGYNSPKSERACYKCCRRWQARMGWSANRLDVCTQKCMI
Ga0068860_10025000613300005843Switchgrass RhizosphereMRLSLVFAICTAFLFALHADVSLAQTNYSGYNSPKSERACYKCCRRWQARMGWSANRL
Ga0075026_10013342123300006057WatershedsMRLSLIFGICATFLFTLHTGISLAQTGYTGYKSPKSATVCYKCCRRNQIKMGLPADQVELCTQRCMIGTARNC*
Ga0070715_1094102113300006163Corn, Switchgrass And Miscanthus RhizosphereMRLSLIFAICATFLFTLHTGISLAQTGYTGYKNQKSERACYKCCRRNQIKMGLPADQVELCTQR
Ga0075018_1062781113300006172WatershedsMRLSLIVGICATFLFTLHAGISHAQTGYTGYKSPKSETACYQCCRRWQTKMGWSPCRLEVCQQKCMIGTGRNC*
Ga0070712_10084814423300006175Corn, Switchgrass And Miscanthus RhizosphereMRLSIIFGICAAFLFTLHTGISLAQTQYSGYKSPKSERACYKCCKRNQIKMGLPAGQVELCTQRCMIGTARNC*
Ga0070712_10122617013300006175Corn, Switchgrass And Miscanthus RhizosphereMRLSLIFGICAAFLFTLHTGVSLAQTNYTGYKTPKSEQACYKCCRRWQARMGWSPNRLDVCTQKC
Ga0079220_1018963223300006806Agricultural SoilMRLSLIFGAVFLFTLHTDISFAQTTHPGYTSYNAAKSEKACYKCCRRWQARMGWSPARLEACSQKCMIGTGRNC*
Ga0075433_1091937323300006852Populus RhizosphereMRLSLIFGICATFLFTLHTGISLAQTEYTGFKSPKSERACYKCCRRNQIKMGLPPDQVELCTQRCMIGTARNC*
Ga0075434_10160731823300006871Populus RhizosphereMRLSLVFAICTAFLFALHADVSLAQTNYSGYNSPKSERACYKCCRRWQARMGWSANRLD
Ga0075429_10192096713300006880Populus RhizosphereMRLSLIFGICATFLFTLHTGISLAQPGYTGYTGYTGYKSPKSGRACYQCCRRNQIKMGLPPDQVGVCVERCRIGTARNC*
Ga0068865_10049094223300006881Miscanthus RhizosphereMRLSLIFAICATFLFTLHTGISLARTGYTGYKNQKSERACYKCCRRNQIKMGLPADQVELCTQRCMIGTARNC*
Ga0074063_1404861813300006953SoilMRLSLIFGICATFLFTLQTGISLAQTGYKSPKSERACYKCCRRNQIKMGLPADQVELCTQRCMIG
Ga0105245_1136676513300009098Miscanthus RhizosphereMRLSLVFAICTAFFFALRADVSLAQTNYSGYNSPKSERACYKCCRRWQARMG
Ga0105242_1006634513300009176Miscanthus RhizosphereMRLSLVFAICTAFFFALHADVSLAQTNYSGYNSPKSERACYKCCRRWQARMGWSANRLDVCTQKCMIG
Ga0126384_1144832913300010046Tropical Forest SoilMRLSLIVGLCTAFLFALHADVSLAQPNYSGYNSPKSERACYKCCRRWQARMGWSPSR
Ga0134122_1327631123300010400Terrestrial SoilMRWSLVCGICVAFLFTLHTGTSLAQTGYTGYKSPKSERACYKCCRRWQARMGW
Ga0134123_1070253913300010403Terrestrial SoilMRLSLIFGICAAFLFTLHTNVSHAQTSYTGYKSPKSETACYKCCRRWQARMGWSGARLEACSQKCMIGTGRNC*
Ga0105246_1089002423300011119Miscanthus RhizosphereMRLSLVFAICTAFFFALRADVSLAQTNYSGYNSPKSERACYKCCRRWQARMGWSANRL
Ga0157314_100456123300012500Arabidopsis RhizosphereMRLSLVFAVCTAFLFALHADVSLAQTNYSGYNSPKSERACYKCCRRWQ
Ga0157332_105898613300012511SoilMRLSLVFAVCTAFLFALHADVSLAQTNYSGYNSPKSERACYKCCRRWQARMGWSANRLDVCTQKCMIGTGRNC*
Ga0157303_1000005943300012896SoilMRMSLIFGICAAFLFTLHTGVSHAQTSYTGYKSPKSETACYKCCRRRTARMGWSGARLEACSQKCMIGTGRNC*
Ga0164300_1004352123300012951SoilMRLSLVFAICTAFFFALRADVSLAQTNYSGYNSPKSERACYKCCRRWQARMGWSANRLDVCTQKCMIGTGRNF*
Ga0164299_1028222913300012958SoilMRLPLIFGICATFLFTLQTGISLAQTGYPGSTGYKSPKSERACYKCCRRNQIKMGLPADQVELCTQRCMIGTARNC*
Ga0164301_1024976813300012960SoilMRLSLIFAICATFLFTLHTGISLAQTGYTGYKNQKSERACYKCCRRNQIKMGL
Ga0164302_1017914713300012961SoilMRLSLIFAICATFLFTLHTGISLAQTGYTGYKNQKSERACYKCCRRNQIKMGLPADKVELCTQRCMIGTARNC*
Ga0157371_1002226313300013102Corn RhizosphereMRMSLIFGICAAFLFTLHTGVSHAQTSYTGYRSPKSETACYKCCRRWQARMGWSGARLEACSQKCMIGTG
Ga0157374_1174078223300013296Miscanthus RhizosphereMRMSLIFEICAAFLFTLHTGASLAQTGYTGYKSPKSERACYKCCRRWQARMGWSPNRL
Ga0157375_1190644013300013308Miscanthus RhizosphereMRLSLVFAICTAFLFALHADVSLAQTNYSGYNSPKSERACYKCCRRWQARMGWSANR
Ga0157379_1067777423300014968Switchgrass RhizosphereMRLSLVFAICTAFLFALHADVSLAQTNYSGYNSPKSERACYKCCRRWQARMGW
Ga0132258_1015919223300015371Arabidopsis RhizosphereMRLPLIFGICATFLFTLHTGISLAQTGYPGSTGYKSPKSERACYKCCRRNQIKMGLPADQVELCTQRCMIGTARNC*
Ga0132258_1034216413300015371Arabidopsis RhizosphereMRLLLILGICAPLLFTLHTGTSLAQTGYTGYKSPKSARACYNCCRRNQIKMGLPPDQVELCVQRCTIGTARNC*
Ga0132258_1110261423300015371Arabidopsis RhizosphereMRLSLIVGSCATFLFTLHTGISHAQTGYTGYKSPKSETACYQCCRRWQTRMGWSPSRLEVCQQKCMIGTGRNC*
Ga0132258_1396889813300015371Arabidopsis RhizosphereMRWSLICGICVAFLFTLHTGTSFSQTSYSGYKSPKSERACYKCCRRWQARMGWSPNRLDV
Ga0132256_10088882813300015372Arabidopsis RhizosphereMRLSLVFTICTAFLFALHADVSLAQTNYSGYNSPKSERACYKCCRRWQARMGWSANRLD
Ga0132256_10152327913300015372Arabidopsis RhizosphereMRLLLILGICAPLLFTLHTGTSLAQTGYTGYKSPKSARACYNCCRRNQIKMGLPP
Ga0132257_10099707713300015373Arabidopsis RhizosphereMRLLLILGICAPLLFTLHTGTSLAQTGYTGYKSPKSARACYNCCRRNQIKMGLPPDQVELCVQRCTIGTARNCWQQLLSWRR*
Ga0132257_10280186813300015373Arabidopsis RhizosphereMRMPLIFGICAAFLFTLHTSVSHAQTSYTGYKSPKSETACYKCCRRWQARMGWSGARLEA
Ga0132255_10013509933300015374Arabidopsis RhizosphereMRLSLIFGICATFLFTPHTGTSLAQTGYTGYKSQKSERACYKCCRRNQIKMGLPADQVELCTQRCMIGTARNC*
Ga0132255_10342850323300015374Arabidopsis RhizosphereMRWSLICGICVAFLFTLHTGTSFSQTSYSGYKSPKSERACYKCCRRWQARMGWSPNRLDVCTQKRVIGTARNC*
Ga0132255_10543248213300015374Arabidopsis RhizosphereMRLSLIVGSCATFLFTLHTGISHAQTGYTGYKSPKSETACYQCCRRWQTRMGWSPSRLEVCQQKCMI
Ga0187786_1005806033300017944Tropical PeatlandMRLSLIFAICAAFLFALNADVSLAQTNYSGYNSPKSERACYKCCRRWQARMGWSANRLDVCTQKCMIGTARNC
Ga0187766_1141693013300018058Tropical PeatlandMRLSLIFAICAAFLFALNADVSLAQTNYSGYNSPKSERACYKCCRRWQARMGWSANR
Ga0187765_1011961123300018060Tropical PeatlandMRLSLIFAICAAFFFALNADVSLAQTNYSGYNSPKSERACYKCCRRWQARMGWSANRLDVCTQKCMIGTARNC
Ga0247792_100030453300022880SoilMRMSLIFGICAAFLFTLHTGVSHAQTSYTGYRSPKSETACYKCCRRWQARMGWSGARLEACSQKCMIGTGRNC
Ga0247753_100059443300022892SoilMRMSLIFGICAAFLFTLHTGVSHAQTSYTGYKSPKSETACYKCCRRWQARMGWSGARLEACSQKCMIGTGRNC
Ga0207672_101087613300025223Corn, Switchgrass And Miscanthus RhizosphereMRMSLIFGICAAFLFTLHTGVSHAQTSYTGYRSPKSETACYKCCRRWQARMG
Ga0207647_1069303013300025904Corn RhizosphereGGDMRLSLVFAICTAFFFALHADVSLAQTNYSGYNSPKSERACYKCCRRWQARMGWSANRLDVCTQKCMIGTGRNC
Ga0207699_1071167413300025906Corn, Switchgrass And Miscanthus RhizosphereMRLSLVFAICTAFFFALHADVSLAQTNYSGYNSPKSERACYKCCRRWQARMGWSANRLDV
Ga0207645_1018453943300025907Miscanthus RhizosphereMRLSLVFAICTAFFFALHADVSLAQTNYSGYNSPKSERACYKCCRRWQARMGWSANRLDVCTQKCMIGTGRNC
Ga0207663_1067517023300025916Corn, Switchgrass And Miscanthus RhizosphereMRLSLVFAICTAFLFALHADVSLAQTNYSGYNSPKSERACYKCCRRWQARMGWSANRLDV
Ga0207649_1047101333300025920Corn RhizosphereMRLSLIFAICATFLFTLHTGISLAQTGYTGYKNQKSERACYKCCRRNQIKMGLPADQ
Ga0207681_1051131513300025923Switchgrass RhizosphereMRLSLVFAICTAFLFALHADVSLAQTNYSGYNSPKSERACYKCCRRWQARMGWSANRLDVCTQ
Ga0207704_1152751623300025938Miscanthus RhizosphereMRLSLVFAICTAFLFALRADVSLAQTNYSGYNSPKSERACYKCCRRWQARMGWSA
Ga0207711_1087400013300025941Switchgrass RhizosphereMRLSLVFAICTAFFFALRADVSLAQTNYSGYNSPKSERACYKCCRRWQARMGWSANRLDVCTKK
Ga0207651_1014008553300025960Switchgrass RhizosphereMRLSLVFAICTAFLFALHADVSLAQTNYSGYNSPKSERACYKCCRRWQARMGWSANRLDVCTQKCMIGTGRNC
Ga0207668_1147637213300025972Switchgrass RhizosphereMRLSLIFGICAAFLFTLHTGVSLAQTNYTGYKTPKSEQACYKCCRRWQARMGWSPNRLDVCTQK
Ga0207703_1065262913300026035Switchgrass RhizosphereMRLSLVFAICTAFFFALRADVSLAQTNYSGYNSPKSERACYKCCRRWQARMGWSANRLDVCTQKCMIGT
Ga0207703_1085465023300026035Switchgrass RhizosphereMRLSLVFAICTAFFFALHADVSLAQTNYSGYNSPKSERACYKCCRRWQARMGWSANRLDVCTQKCMIGTG
Ga0209647_105721033300026319Grasslands SoilMRLSLFFGLCSAFLFTLHTGMSLAQTGYTGYKSPKSERACYKCCRRNQIKMGLPADQVELCTQRCMIGTARNC
Ga0256821_100236923300026452SedimentMRLSLIFGICAVFLFTLHTDISFAQTTYQGYTSYNAAKSEKACYKCCRRWQARMGWSPARLEACSQKCMIGTGRNC
Ga0208761_101417923300026995SoilMRLSLIFGICATFLFTLHTGISLAQTGYKSPKSERACYKCCRRNQIKMGLPPAQVELCTQRCMIGTARNC
Ga0209814_1047755013300027873Populus RhizosphereMRLSLIFGICATFLFTLHTGISLAQPGYTGYTGYTGYKSPKSGRACYQCCRRNQIKMGLPPDQVGVCVERCRIGTARNC
Ga0268266_1070825523300028379Switchgrass RhizosphereMRLSLVFAICTAFFFALRADVSLAQTNYSGYNSPKSERACYKCCRRWQARMGWSANRLD
Ga0170824_11646248543300031231Forest SoilMRLSLIFGICATFLFTLQTGISLAQTGYTGYKSPKSERACYKCCKRNQIKMGLPADQVELCTQRCMIGTARNC
Ga0307473_1004559333300031820Hardwood Forest SoilMRMPLIFGICAAFLFTLHTNVSHAQTSYTGYKSPKSETACYKCCRRWQARMGWSGARLEACSQKCMIGTGRNC
Ga0307470_1011934723300032174Hardwood Forest SoilMRLSLIFGICAAFLFALHTGVSLAQTSYTGYKSPKSETACYKCCRRWQARMGWSPNRLEVCTQKCMIGTGRNC
Ga0307470_1046502023300032174Hardwood Forest SoilMRLSLIVGICATFLFALHAGISHAQTGYTGNKGPKSERACYQCCRRWQSRMGLSPSRVEVCQQKCMIGTGRN
Ga0307471_10027011833300032180Hardwood Forest SoilMRLSLIFGICAAFLFTLHTGISLAQTSYTGFKTPKSESACYKCCRRWQARMGWSGARLEACSQKCMIGTGRNC
Ga0307471_10035750523300032180Hardwood Forest SoilMRLSLIVGICATFLFALHAGISHAQTGYTGNKGPKSERACYQCCRRWQARMGWSPSRVEVCQQKCMIGTGRNC
Ga0307471_10051009213300032180Hardwood Forest SoilMRMPLIFGICAAFLFTLHTGVSLAQTNYTGYKTPKSEQACYKCCRRWQARMGWSPNRLDVCTQKCVIGTGRNC
Ga0307472_10177749313300032205Hardwood Forest SoilMRLSLIVGICATFLFTLHAGISHAQTGYTGNKGPKSERACYQCCRRWQTRMGWSPSRLEVCQQK
Ga0310810_1015043123300033412SoilMRLPLIFGICATFLFTLQTGISLAQTGYPGSTGYKSPKSERACYKCCRRNQIKMGLPADQVELCTQRCMIGTARNC
Ga0326726_1009577823300033433Peat SoilMRLSLVFGICATFLFTLHTGTSLAQTGNTGYKSPKSERACYKCCKRNQIKMGLPADQVELCTQRCMIGTARNC
Ga0373950_0036344_1_1683300034818Rhizosphere SoilMRLSLVFAICTAFLFALHADVSLAQTNYSGYNSPKSERACYKCCRRWQARMGWSAN


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.