NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F105920

Metagenome Family F105920

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F105920
Family Type Metagenome
Number of Sequences 100
Average Sequence Length 61 residues
Representative Sequence MIIKINYNKSTGAITLTDDESTMEAVVTQVVDTTDELSFEIPLNVSAYQTQFEEIEIDGNDN
Number of Associated Samples 86
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 2.00 %
% of genes near scaffold ends (potentially truncated) 19.00 %
% of genes from short scaffolds (< 2000 bps) 62.00 %
Associated GOLD sequencing projects 80
AlphaFold2 3D model prediction Yes
3D model pTM-score0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (51.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(24.000 % of family members)
Environment Ontology (ENVO) Unclassified
(76.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(82.000 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 11.11%    β-sheet: 20.00%    Coil/Unstructured: 68.89%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.41
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF10162G8 71.00
PF08291Peptidase_M15_3 1.00
PF00753Lactamase_B 1.00


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A51.00 %
All OrganismsrootAll Organisms49.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000101|DelMOSum2010_c10064668All Organisms → cellular organisms → Bacteria1730Open in IMG/M
3300000117|DelMOWin2010_c10011955All Organisms → Viruses → Predicted Viral4857Open in IMG/M
3300000947|BBAY92_10196163Not Available526Open in IMG/M
3300000973|BBAY93_10045612Not Available1148Open in IMG/M
3300001450|JGI24006J15134_10002890All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae → Parvibaculum → unclassified Parvibaculum → Parvibaculum sp.9331Open in IMG/M
3300001589|JGI24005J15628_10032346All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.2161Open in IMG/M
3300001589|JGI24005J15628_10133616Not Available779Open in IMG/M
3300001947|GOS2218_1000886All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium1906Open in IMG/M
3300002231|KVRMV2_100568885All Organisms → Viruses → Predicted Viral1118Open in IMG/M
3300002242|KVWGV2_10028040All Organisms → Viruses → Predicted Viral1883Open in IMG/M
3300002242|KVWGV2_10225749All Organisms → Viruses → Predicted Viral3745Open in IMG/M
3300002242|KVWGV2_10931014Not Available509Open in IMG/M
3300002483|JGI25132J35274_1016563All Organisms → Viruses → Predicted Viral1780Open in IMG/M
3300004097|Ga0055584_100168189Not Available2216Open in IMG/M
3300004457|Ga0066224_1060253All Organisms → Viruses → Predicted Viral3153Open in IMG/M
3300004461|Ga0066223_1327141Not Available578Open in IMG/M
3300005086|Ga0072334_10451786All Organisms → Viruses5068Open in IMG/M
3300005239|Ga0073579_1177547All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes8560Open in IMG/M
3300006164|Ga0075441_10051289Not Available1636Open in IMG/M
3300006484|Ga0070744_10098113All Organisms → cellular organisms → Bacteria847Open in IMG/M
3300006735|Ga0098038_1080416All Organisms → cellular organisms → Bacteria1143Open in IMG/M
3300006737|Ga0098037_1194909All Organisms → cellular organisms → Bacteria665Open in IMG/M
3300006789|Ga0098054_1004098All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium6522Open in IMG/M
3300006916|Ga0070750_10256210Not Available758Open in IMG/M
3300006919|Ga0070746_10476487Not Available551Open in IMG/M
3300006928|Ga0098041_1047456All Organisms → cellular organisms → Bacteria1392Open in IMG/M
3300007863|Ga0105744_1015317All Organisms → Viruses → Predicted Viral1960Open in IMG/M
3300007864|Ga0105749_1187709Not Available502Open in IMG/M
3300008050|Ga0098052_1279352Not Available634Open in IMG/M
3300009071|Ga0115566_10052705All Organisms → Viruses → Predicted Viral2754Open in IMG/M
3300009172|Ga0114995_10746627Not Available535Open in IMG/M
3300009420|Ga0114994_10238558All Organisms → Viruses → Predicted Viral1219Open in IMG/M
3300009426|Ga0115547_1015103Not Available3207Open in IMG/M
3300009435|Ga0115546_1030799Not Available2170Open in IMG/M
3300009481|Ga0114932_10030835All Organisms → cellular organisms → Bacteria3572Open in IMG/M
3300009481|Ga0114932_10486155Not Available727Open in IMG/M
3300009498|Ga0115568_10113720Not Available1326Open in IMG/M
3300010883|Ga0133547_10175963All Organisms → Viruses → Predicted Viral4599Open in IMG/M
3300011013|Ga0114934_10341286Not Available671Open in IMG/M
3300011253|Ga0151671_1103333All Organisms → Viruses → Predicted Viral1496Open in IMG/M
3300012920|Ga0160423_10007931All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales8481Open in IMG/M
3300012920|Ga0160423_10153424Not Available1616Open in IMG/M
3300012920|Ga0160423_10532305Not Available798Open in IMG/M
3300012936|Ga0163109_10095617Not Available2176Open in IMG/M
3300012954|Ga0163111_10482040All Organisms → Viruses → Predicted Viral1140Open in IMG/M
3300017706|Ga0181377_1002799All Organisms → cellular organisms → Bacteria5169Open in IMG/M
3300017713|Ga0181391_1107963Not Available627Open in IMG/M
3300017738|Ga0181428_1051329Not Available960Open in IMG/M
3300017740|Ga0181418_1062399Not Available918Open in IMG/M
3300017744|Ga0181397_1055518All Organisms → Viruses → Predicted Viral1088Open in IMG/M
3300017745|Ga0181427_1111386Not Available668Open in IMG/M
3300017746|Ga0181389_1136952Not Available658Open in IMG/M
3300017749|Ga0181392_1181093Not Available611Open in IMG/M
3300017751|Ga0187219_1009101All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → unclassified Legionellales → Legionellales bacterium3926Open in IMG/M
3300017757|Ga0181420_1079600All Organisms → Viruses → Predicted Viral1024Open in IMG/M
3300017758|Ga0181409_1014892All Organisms → Viruses → Predicted Viral2553Open in IMG/M
3300017768|Ga0187220_1188683Not Available622Open in IMG/M
3300017769|Ga0187221_1170051Not Available639Open in IMG/M
3300017770|Ga0187217_1021870All Organisms → Viruses → Predicted Viral2291Open in IMG/M
3300017770|Ga0187217_1166759Not Available734Open in IMG/M
3300017772|Ga0181430_1026721All Organisms → Viruses → Predicted Viral1867Open in IMG/M
3300017773|Ga0181386_1083532Not Available1004Open in IMG/M
3300017779|Ga0181395_1268667Not Available519Open in IMG/M
3300020175|Ga0206124_10262829Not Available666Open in IMG/M
3300020421|Ga0211653_10378245Not Available610Open in IMG/M
3300020438|Ga0211576_10151379All Organisms → Viruses → Predicted Viral1255Open in IMG/M
3300020595|Ga0206126_10052078Not Available2219Open in IMG/M
3300021085|Ga0206677_10022672All Organisms → Viruses → Predicted Viral3731Open in IMG/M
3300021085|Ga0206677_10029273All Organisms → Viruses → Predicted Viral3127Open in IMG/M
3300021085|Ga0206677_10259489Not Available713Open in IMG/M
3300021085|Ga0206677_10261208Not Available709Open in IMG/M
3300021368|Ga0213860_10315676Not Available682Open in IMG/M
3300022050|Ga0196883_1000159All Organisms → Viruses6967Open in IMG/M
3300022053|Ga0212030_1046600Not Available614Open in IMG/M
(restricted) 3300024259|Ga0233437_1348712Not Available556Open in IMG/M
3300024344|Ga0209992_10302766Not Available652Open in IMG/M
3300025066|Ga0208012_1001707All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Eurybiavirus → unclassified Eurybiavirus → Eurybiavirus sp.5677Open in IMG/M
3300025110|Ga0208158_1011340All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.2427Open in IMG/M
3300025120|Ga0209535_1002827All Organisms → Viruses11263Open in IMG/M
3300025120|Ga0209535_1017513All Organisms → Viruses → Predicted Viral3730Open in IMG/M
3300025120|Ga0209535_1160568Not Available692Open in IMG/M
3300025127|Ga0209348_1128992Not Available760Open in IMG/M
3300025128|Ga0208919_1009834All Organisms → Viruses → Predicted Viral3959Open in IMG/M
3300025133|Ga0208299_1153293Not Available722Open in IMG/M
3300025138|Ga0209634_1068138All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.1683Open in IMG/M
3300025151|Ga0209645_1007332All Organisms → Viruses → Predicted Viral4626Open in IMG/M
3300025577|Ga0209304_1012241All Organisms → cellular organisms → Bacteria3064Open in IMG/M
3300027672|Ga0209383_1046411All Organisms → Viruses → Predicted Viral1654Open in IMG/M
3300027687|Ga0209710_1037716All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → unclassified Legionellales → Legionellales bacterium2306Open in IMG/M
(restricted) 3300028045|Ga0233414_10357080Not Available676Open in IMG/M
3300029309|Ga0183683_1000311All Organisms → Viruses28671Open in IMG/M
3300029318|Ga0185543_1036577Not Available1089Open in IMG/M
3300029318|Ga0185543_1060895Not Available784Open in IMG/M
3300029448|Ga0183755_1028172Not Available1704Open in IMG/M
3300031519|Ga0307488_10013305Not Available6672Open in IMG/M
3300031519|Ga0307488_10019704Not Available5443Open in IMG/M
3300031629|Ga0307985_10013060All Organisms → Viruses → Predicted Viral4092Open in IMG/M
3300031659|Ga0307986_10295342Not Available681Open in IMG/M
3300031851|Ga0315320_10005753All Organisms → cellular organisms → Bacteria10126Open in IMG/M
3300032073|Ga0315315_10014148Not Available7355Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine24.00%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater17.00%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine8.00%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater6.00%
Surface SeawaterEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater5.00%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine5.00%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous4.00%
Marine SedimentEnvironmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment4.00%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface4.00%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater2.00%
Sackhole BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine2.00%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine2.00%
Estuary WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water2.00%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine2.00%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater2.00%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine2.00%
Macroalgal SurfaceHost-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface2.00%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine1.00%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine1.00%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater1.00%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine1.00%
EstuarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine1.00%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine1.00%
WaterEnvironmental → Aquatic → Unclassified → Unclassified → Unclassified → Water1.00%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000101Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010EnvironmentalOpen in IMG/M
3300000117Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010EnvironmentalOpen in IMG/M
3300000947Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY92Host-AssociatedOpen in IMG/M
3300000973Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY93Host-AssociatedOpen in IMG/M
3300001450Marine viral communities from the Pacific Ocean - LP-53EnvironmentalOpen in IMG/M
3300001589Marine viral communities from the Pacific Ocean - LP-40EnvironmentalOpen in IMG/M
3300001947Marine microbial communities from the Gulf of Maine, Canada - GS002EnvironmentalOpen in IMG/M
3300002231Marine sediment microbial communities from Santorini caldera mats, Greece - red matEnvironmentalOpen in IMG/M
3300002242Marine sediment microbial communities from Kolumbo Volcano mats, Greece - white/grey matEnvironmentalOpen in IMG/M
3300002483Marine viral communities from the Pacific Ocean - ETNP_6_30EnvironmentalOpen in IMG/M
3300004097Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaGEnvironmentalOpen in IMG/M
3300004457Marine viral communities from Newfoundland, Canada MC-1EnvironmentalOpen in IMG/M
3300004461Marine viral communities from Newfoundland, Canada BC-2EnvironmentalOpen in IMG/M
3300005086Microbial Community from Halfdan Field MHDA3EnvironmentalOpen in IMG/M
3300005239Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of MaineEnvironmentalOpen in IMG/M
3300006164Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNAEnvironmentalOpen in IMG/M
3300006484Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535EnvironmentalOpen in IMG/M
3300006735Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaGEnvironmentalOpen in IMG/M
3300006737Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaGEnvironmentalOpen in IMG/M
3300006789Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaGEnvironmentalOpen in IMG/M
3300006916Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24EnvironmentalOpen in IMG/M
3300006919Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21EnvironmentalOpen in IMG/M
3300006928Marine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaGEnvironmentalOpen in IMG/M
3300007863Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1459B_0.2umEnvironmentalOpen in IMG/M
3300007864Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1461B_3.0umEnvironmentalOpen in IMG/M
3300008050Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaGEnvironmentalOpen in IMG/M
3300009071Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405EnvironmentalOpen in IMG/M
3300009172Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154EnvironmentalOpen in IMG/M
3300009420Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152EnvironmentalOpen in IMG/M
3300009426Pelagic marine microbial communities from North Sea - COGITO_mtgs_100420EnvironmentalOpen in IMG/M
3300009435Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413EnvironmentalOpen in IMG/M
3300009481Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaGEnvironmentalOpen in IMG/M
3300009498Pelagic marine microbial communities from North Sea - COGITO_mtgs_120426EnvironmentalOpen in IMG/M
3300010883western Arctic Ocean co-assemblyEnvironmentalOpen in IMG/M
3300011013Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 4SBTROV10_white metaGEnvironmentalOpen in IMG/M
3300011253Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_2, permeateEnvironmentalOpen in IMG/M
3300012920Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaGEnvironmentalOpen in IMG/M
3300012936Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St13 metaGEnvironmentalOpen in IMG/M
3300012954Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St18 metaGEnvironmentalOpen in IMG/M
3300017706Marine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaGEnvironmentalOpen in IMG/M
3300017713Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11EnvironmentalOpen in IMG/M
3300017738Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 51 SPOT_SRF_2014-02-12EnvironmentalOpen in IMG/M
3300017740Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 41 SPOT_SRF_2013-03-13EnvironmentalOpen in IMG/M
3300017744Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 20 SPOT_SRF_2011-02-23EnvironmentalOpen in IMG/M
3300017745Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 50 SPOT_SRF_2014-01-15EnvironmentalOpen in IMG/M
3300017746Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 12 SPOT_SRF_2010-06-29EnvironmentalOpen in IMG/M
3300017749Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15EnvironmentalOpen in IMG/M
3300017751Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21 (version 2)EnvironmentalOpen in IMG/M
3300017757Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 43 SPOT_SRF_2013-05-22EnvironmentalOpen in IMG/M
3300017758Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 32 SPOT_SRF_2012-05-30EnvironmentalOpen in IMG/M
3300017768Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 6 SPOT_SRF_2009-12-23 (version 2)EnvironmentalOpen in IMG/M
3300017769Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 5 SPOT_SRF_2009-10-22 (version 2)EnvironmentalOpen in IMG/M
3300017770Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15 (version 2)EnvironmentalOpen in IMG/M
3300017772Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 53 SPOT_SRF_2014-04-10EnvironmentalOpen in IMG/M
3300017773Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 9 SPOT_SRF_2010-03-24EnvironmentalOpen in IMG/M
3300017779Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 18 SPOT_SRF_2010-12-16EnvironmentalOpen in IMG/M
3300020175Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160321_2EnvironmentalOpen in IMG/M
3300020421Marine microbial communities from Tara Oceans - TARA_B100000902 (ERX556005-ERR599007)EnvironmentalOpen in IMG/M
3300020438Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)EnvironmentalOpen in IMG/M
3300020595Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160412_1EnvironmentalOpen in IMG/M
3300021085Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015EnvironmentalOpen in IMG/M
3300021368Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO550EnvironmentalOpen in IMG/M
3300022050Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (v3)EnvironmentalOpen in IMG/M
3300022053Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (v2)EnvironmentalOpen in IMG/M
3300024259 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_200_MGEnvironmentalOpen in IMG/M
3300024344Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025066Marine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025110Marine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025120Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)EnvironmentalOpen in IMG/M
3300025127Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)EnvironmentalOpen in IMG/M
3300025128Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025133Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025138Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)EnvironmentalOpen in IMG/M
3300025151Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)EnvironmentalOpen in IMG/M
3300025577Pelagic marine microbial communities from North Sea - COGITO_mtgs_100423 (SPAdes)EnvironmentalOpen in IMG/M
3300027672Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG029-DNA (SPAdes)EnvironmentalOpen in IMG/M
3300027687Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes)EnvironmentalOpen in IMG/M
3300028045 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_10_MGEnvironmentalOpen in IMG/M
3300029309Marine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001440EnvironmentalOpen in IMG/M
3300029318Marine giant viral communities collected during Tara Oceans survey from station TARA_038 - TARA_Y100000289EnvironmentalOpen in IMG/M
3300029448Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082EnvironmentalOpen in IMG/M
3300031519Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2EnvironmentalOpen in IMG/M
3300031629Marine microbial communities from Ellis Fjord, Antarctic Ocean - #80EnvironmentalOpen in IMG/M
3300031659Marine microbial communities from Ellis Fjord, Antarctic Ocean - #82EnvironmentalOpen in IMG/M
3300031851Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 21515EnvironmentalOpen in IMG/M
3300032073Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSum2010_1006466823300000101MarineMIIKINYDKSTRQLVITDDESTMEATIAQVVDTDDQLQFEIPLNVSAYQTQFEEIELDGNDN*
DelMOWin2010_1001195533300000117MarineMIIKINYNKSTGAITLTDDESTMQATVTEIIDTEDELSFEIPLNISAYQAQFDEIELADGDNN*
BBAY92_1019616323300000947Macroalgal SurfaceMIIKINYNKSTGALTLTDDESLMEATITEVVDNENELSFEIPLNVSAYQAQFDEIEIADGDNN*
BBAY93_1004561213300000973Macroalgal SurfaceMIIKINYNKSTGALTLTDDEELMEATLNEIVDNTDELSFEISLNTSAYQAQFDEIEIADGDNN*
JGI24006J15134_1000289033300001450MarineMIIKINYNKSTGAITLTDDENAMEAVVTQIVDTADKLSFEIPLNVSAYQTQFEEIEIDGNNN*
JGI24005J15628_1003234623300001589MarineMIIKLNYNKSTGVITLTDDEAAMEAVVAQVVDNTNKLSFEISLNTSAYQTQFEELEIEIDGNDN*
JGI24005J15628_1013361623300001589MarineMIIKINYNKSTGAITLTDDESAMEAVVTQIVDTADELSFEIPLNVSAYQTQFEEIEIDGNNN*
GOS2218_100088623300001947MarineMVIKINYNKLTNELTITDDESTMDAVITQVVDTDDQLQFEIPLNVSAYQTQFEEIEVDGNNN*
KVRMV2_10056888523300002231Marine SedimentMIIKINYNKSTGAITLTDDEELMEATVNETVDTTEELSFEISLNTSAYQAQFDAIEETDGNXN*
KVWGV2_1002804013300002242Marine SedimentKSTGAITLTDDEELMEATVTEIVDTTEELSFEISLNTSAYQDQFDAIEETDGNDN*
KVWGV2_1022574963300002242Marine SedimentMIIKINYNKSTGVITLTDDEEPMEATVNETVDTTEELSFEISLNTSAYQVQFDEIEIADGNDN*
KVWGV2_1093101423300002242Marine SedimentIIKINYNKSTGAITLTDDEELMEATVNETVDTTEELSFEISLNTSAYQAQFDAIEETDGNNN*
JGI25132J35274_101656313300002483MarineMIIKINYNKSTGAITLTDDEALMEAAINEKVDTTDELSFEISLNTSAYQTQFDEIEETDGNNN*
Ga0055584_10016818923300004097Pelagic MarineMIIKINYDKSTRQLVITDDESTMEATIAQVVDTDDQLQFEIPLNVSAYQTQFEEIEFDGNDN*
Ga0066224_106025323300004457MarineMIIKLNYNKSTGAITLTDDEVAMEAVVAQVVDTTDKLSFEISLNTSAYQTQFEELEIEIDGNDN*
Ga0066223_132714123300004461MarineMVIKINYNKLTNELTITDDESTMDAVITQVVDTDDQLQFEIPLNVSAYQTQFEEIEVDGNDN*
Ga0072334_1045178613300005086WaterMIIKINYDKSTRQLVITDDESTMEATIAQVVDTDDQLQFEIPLNVSAYQTQFEEIE
Ga0073579_117754763300005239MarineMIIKINYNKSTNELTIADDESAMEATITQVVDTDDQLQFEIPLNVSAYQTQFEEIEVDGNDN*
Ga0075441_1005128923300006164MarineMIIKINYNKSTNELTIADDESAMEAAITQVVDTDEELQFEIPLNVSAYQTQFEEIEVDGNDN*
Ga0070744_1009811323300006484EstuarineMILNITYNKSTGNITLVDDEELMEATVNESSLVDNENELSIEISLNVSAYQTQFEEIEIDGDDN*
Ga0098038_108041623300006735MarineMIININYNKSTGTITLTDDEESMEATVNEVLDNDSELSFEISLNTSLYQTQFEEIEIDGNNN*
Ga0098037_119490923300006737MarineIKINYNKSTGAITLTDDEELMEATVTEIVDTTEELSFEISLNTSAYQAQFDAIEETDGNDN*
Ga0098054_100409853300006789MarineMILNITYNKSTGDITLVDDEELMEATINQSNLVDNEDELSFEVALNTSSYQTQFEETEVDGDDN*
Ga0070750_1025621013300006916AqueousTGTITLTDDEELMGATVNELVDTDSELSFEISLNTSSYQTQFEEIEIDGNDN*
Ga0070746_1047648723300006919AqueousMIININYNKSTGTITLTDDEELMGATVNELVDTDSELSFEISLNTSSYQTQFEEIEIDGNDN*
Ga0098041_104745623300006928MarineMIININYNKSTGTITLTDDEESMEATVNEVLDNDSELSFEISLNTSLYQTQFEEIEIDGNDN*
Ga0105744_101531723300007863Estuary WaterMIIKIEYNKLTGAITLTDDERAMEAVVAQIVDTTDKLSFEIPLNVSAYQTQFEEIEIDGNDN*
Ga0105749_118770913300007864Estuary WaterMILNITYNKSTGNITLVDDEELMEATVNESSLVDNENELSIEISLNVSAYQTQFEEIEID
Ga0098052_127935223300008050MarineMILNITYDKSTGNITLVDDEELMEATVNESSLVDNEDELSFEVALNTSSYQTQFEEIEVDGDDN*
Ga0115566_1005270523300009071Pelagic MarineMIIKINYDKSTRQLVITDDESTMEATIAQLVDTDDQLQFEIPLNVSAYQTQFEEIEFDGNDN*
Ga0114995_1074662723300009172MarineMIIKINYNKSTNELTIADDESAMEATITQVVDTDEELQFEIPLNVSAYQTQFEEIEVDGNDN*
Ga0114994_1023855823300009420MarineMIIKINYNKSTNELTIADDESAMDATITQVVDTDDQLQFEIPLNVSAYQTQFEEIEVDGNDN*
Ga0115547_101510333300009426Pelagic MarineQLVITDDESTMEATIAQVVDTDDQLQFEIPLNVSAYQTQFEEIEFDGNDN*
Ga0115546_103079923300009435Pelagic MarineNIMIIKINYDKSTRQLVITDDESTMEATIAQVVDTDDQLQFEIPLNVSAYQTQFEEIEFDGNDN*
Ga0114932_1003083523300009481Deep SubsurfaceMIIKIEYNKSNGTITLTDDESTMEATVNEIIDTTDELSFEISLNTSTYQTQFEEIEIDGNDN*
Ga0114932_1048615513300009481Deep SubsurfaceMIIKINYNKSTGVITLTDDEEPMEATVNETVDTTEELSFEISLNTSAYQSLFEEIEEIDGNDN*
Ga0115568_1011372013300009498Pelagic MarineSTRQLVITDDESTMEATIAQLVDTDDQLQFEIPLNVSAYQTQFEEIEFDGNDN*
Ga0133547_1017596313300010883MarineTNELTIADDESAMEATITQVVDTDEELQFEIPLNVSAYQTQFEEIEVDGNDN*
Ga0114934_1034128623300011013Deep SubsurfaceMIIKINYNKSTGAITLTDDEELMEATVNETVDTTEELSFEISLNTSAYQTQFEEIEIDGNDN*
Ga0151671_110333323300011253MarineMIIKINYNKSTGAITLTDDETTMEATVTQIVDTDDELQFEIPLNVSAYQTQFEEIEIDGNDN*
Ga0160423_1000793143300012920Surface SeawaterMIIKINYNKSTGALTLTDDEELMEASLNEIVDNTDELSFEISLNTSAYQSQFDEIELADGYDN*
Ga0160423_1015342423300012920Surface SeawaterMIIKINYNKSTGALTLTDDEELMEAILNKTVDTTDELSFEISLNISAYQAQFDEIEIADGNDN*
Ga0160423_1053230523300012920Surface SeawaterMIIKINYNKSTGAITLTDDEALMEAAISEKVDTTDELSFEISLNTSAYQTQFDEIEETDGNNN*
Ga0163109_1009561723300012936Surface SeawaterMIIKINYNKSTGAITLTDDESTMEATVTQIVDNADELSFEIPLNVSEYQAQFKEIEINGDNN*
Ga0163111_1048204023300012954Surface SeawaterMIIKINYNKSTGALTLTDDEELMEAALNEIVDNTDELSFEISLNTSAYQSQFDEIELADGYDN*
Ga0181377_100279973300017706MarineMIININYNKSTGTITLTDDEELMEATVNKLVDNDIELSFEISLNTSSYQTQFEEIEIDGNDN
Ga0181391_110796313300017713SeawaterMIIKINYNKSNGAITLTDDERAMEAVVTQIVDTTDELSFEIPLNVSAYQTQFEEIEIDGNDN
Ga0181428_105132923300017738SeawaterMIIKINYNKSTGAITLTDDESAMEAIVTQIVDTTDELSFEIPLNVSAYQTQFEETEIDGNDN
Ga0181418_106239913300017740SeawaterGTITLTDDEELMEATVNELVDTDSELSFEISLNTSSYQTQFEEIEIDGNDN
Ga0181397_105551823300017744SeawaterMILNITYNKSTGNITLVDDEELMEATVNESSLVDNENELSIEISLNVSAYQTQFEEIEMDGDDN
Ga0181427_111138613300017745SeawaterMIIKINYNKSTGAITLTDDESTMEAVVTQVVDTTDKLSFEIPLNVSAYQSQFEEIEIDGNDN
Ga0181389_113695223300017746SeawaterMIIKINYNKSTGAITLTDDESTMEAVVTQVVDTTDELSFEIPLNVSAYQTQFEEIEIDGNDN
Ga0181392_118109323300017749SeawaterMIIKINYNKSTGAITLTDDERAMEAVVTQIVDTTDELSFEIPLNVSAYQSQFEEIEIDGNDN
Ga0187219_100910123300017751SeawaterMIININYNKSTGTITLTDDEELMEATVNELVDNDNELSFEISLNTSSYQTQFEEIEIDGNDN
Ga0181420_107960013300017757SeawaterTGNITLVDDEELMEATVNESSLVDNENELSIEISLNVSAYQTQFEEIEIDGNDN
Ga0181409_101489223300017758SeawaterMILNITYNKSTGNITLVDDEELMEATVNEASLVDNENELSIEISLNVSAYQTQFEEIEIDGDDN
Ga0187220_118868323300017768SeawaterMILNITYNKSTGNITLVDDEELMEATVNESSLVDNENELSIEISLNVSAYQTQFEEIEIDGDD
Ga0187221_117005123300017769SeawaterILNITYNKSTGNITLVDDEELMEATVNESSLVDNENELSIEISLNVSAYQTQFEEIEIDGDDN
Ga0187217_102187023300017770SeawaterMIININYNKSTGTITLTDDEELMEATVNELVDNDNELSFEVSLNTSSYQTQFEEIEIDGNDN
Ga0187217_116675923300017770SeawaterMIIKINYNKSTGAITLTDDESTMEAVVTQVVDTTDELSFEIPLNVSAYQSQFEEIEIDGNDN
Ga0181430_102672113300017772SeawaterMILNITYNKSTGNITLVDDEELMEATVNESSLVDNENELSIEISLNVSAYQTQFEEIEIDGNDN
Ga0181386_108353223300017773SeawaterMIIKINYNKSTGAITLTDDERAMEAVVTHIVDTTDELSFEIPLNVSAYQSQFEEIEIDGNDN
Ga0181395_126866723300017779SeawaterMIININYNKSTGTITLTDDEELMETTVNELVDTDSELSFEISLNTSSYQTQFEEIEIDGNDN
Ga0206124_1026282923300020175SeawaterMIIKINYDKSTRQLVITDDESTMEATIAQLVDTDDQLQFEIPLNVSAYQTQF
Ga0211653_1037824523300020421MarineMIIKINYNKSTGAITLTDDESTMEATVTQIVDNADELSFEIPLNVSEYQAQFKEIEINGDNN
Ga0211576_1015137923300020438MarineMILNITYNKSTGNITLVDDEELMEATVNESSLVDNENELSIEISLNVSAYQTQFEEIEIDGDDN
Ga0206126_1005207823300020595SeawaterMIIKINYDKSTRQLVITDDESTMEATIAQLVDTDDQLQFEIPLNVSAYQTQFEEIEFDGNDN
Ga0206677_1002267223300021085SeawaterMIININYNKSTGTITLTDDEELMGATVNELVDTDSELSFEISLNTSSYQTQFEEIEIDGNNN
Ga0206677_1002927333300021085SeawaterMIININYNKSTGTITLTDDEELMEATVNELVDTDSELSFEISLNTSSYQTQFEEIEIDGNDN
Ga0206677_1025948923300021085SeawaterMIITINYNKSTNELTIADDESAMEATITQVVDTDDQLQFEIPLNVSAYQTQFEEIEVDGNDN
Ga0206677_1026120823300021085SeawaterMIININYNKSTGTITLTDDEELMEATVNELVDSDSELSFEISLNTSSYQTQFEEIEIDGNDN
Ga0213860_1031567623300021368SeawaterMIIKINYNKSTGAITLTDDESTMEATVTQIVDNADELSFEIPLNVSEYQAQFEEIEING
Ga0196883_100015933300022050AqueousMIIKINYNKSTGAITLTDDESTMQATVTEIIDTEDELSFEIPLNISAYQAQFDEIELADGDNN
Ga0212030_104660023300022053AqueousMIININYNKSTGTITLTDDEELMGATVNELVDTDSELSFEISLNTSSYQTQFEEIEIDGNDN
(restricted) Ga0233437_134871223300024259SeawaterMIIKINYNKSTNELTITDDESAMEATITQVVDTDEELQFEIPLNVSSYQTQFEEIEVDGDDN
Ga0209992_1030276623300024344Deep SubsurfaceMIIKINYNKSTGAITLTDDESTMEATVNEIIDTTDELSFEISLNTSTYQTQFEEI
Ga0208012_100170733300025066MarineMILNITYNKSTGDITLVDDEELMEATINQSNLVDNEDELSFEVALNTSSYQTQFEETEVDGDDN
Ga0208158_101134023300025110MarineMIININYNKSTGTITLTDDEESMEATVNEVLDNDSELSFEISLNTSLYQTQFEEIEIDGNDN
Ga0209535_100282773300025120MarineMIIKIEYNKLTGAITLTDDERAMEAVVAQIVDTTDKLSFEIPLNVSAYQTQFEEIEIDGNDN
Ga0209535_101751323300025120MarineMIIKINYNKSTGAITLTDDENAMEAVVTQIVDTADKLSFEIPLNVSAYQTQFEEIEIDGNNN
Ga0209535_116056813300025120MarineITINYNKSTNELTIADDESAMEATITQVVDTDDQLQFEIPLNVSAYQTQFEEIEVDGNNN
Ga0209348_112899223300025127MarineMIIKINYNKSTGAITLTDDEELMEATAAEIVNTTEELSFEISLNTSAYQSQFDEIEVTDGDDN
Ga0208919_100983473300025128MarineMIIKINYNKSTGAITLTDDESTMEATVTQIVDNTDELSFEIPLNVSAYQTQFEEIEIDGDNN
Ga0208299_115329323300025133MarineMILNITYDKSTGNITLVDDEELMEATVNESSLVDNEDELSFEVALNTSSYQTQFEEIEVDGDDN
Ga0209634_106813823300025138MarineMIIKLNYNKSTGVITLTDDEAAMEAVVAQVVDNTNKLSFEISLNTSAYQTQFEELEIEIDGNDN
Ga0209645_100733243300025151MarineMIIKINYNKLTGAITLTDDESTMEATVTQIVDNTDELSFEIPLNVSAYQAQFEEIEIDGNNN
Ga0209304_101224123300025577Pelagic MarineMIIKINYDKSTRQLVITDDESTMEATIAQVVDTDDQLQFEIPLNVSAYQTQFEEIEFDGNDN
Ga0209383_104641123300027672MarineMIIKINYNKSTNELTIADDESAMEAAITQVVDTDEELQFEIPLNVSAYQTQFEEIEVDGNDN
Ga0209710_103771623300027687MarineMIIKINYNKSTNELTIADDESAMEATITQVVDTDEELQFEIPLNVSAYQTQFEEIEVDGNDN
(restricted) Ga0233414_1035708013300028045SeawaterMIIKINYDKSTRQLVITDDESTMEATIAQVVDTDDQLQFEIPLNVSAYQTQFEEIELDGNDN
Ga0183683_100031133300029309MarineMIIKINYNKSTGALTLTDDEELMEAALNEIVDNTDELSFEISLNTSAYQSQFDEIELADGYDN
Ga0185543_103657723300029318MarineMIIKINYNKSTGALTLTDDEELMEATITEVVDNENELSFEIPLNVSAYQAQFDEIEIADGDNN
Ga0185543_106089523300029318MarineMIIKINYNKSTGALTLTDDEELMEAALNEIVDNTDELSFEISLNTSAYQAQFDEIEIADGNDN
Ga0183755_102817223300029448MarineMIIKINYNKSTGAITLTDDESTMEAVVTQIVDTTDELSFEIPLNVSEYQAQFEEIEINGDNN
Ga0307488_1001330523300031519Sackhole BrineMVIKINYNKLTNELTITDDESTMDAVITQVIDTDDQLQFEIPLNVSAYQTQFEEIEVDGNNN
Ga0307488_1001970433300031519Sackhole BrineMIIKLNYNKSTGAITLTDDEVAMEAVVAQVVDTTDKLSFEISLNTSAYQTQFEELEIEIDGNDN
Ga0307985_1001306023300031629MarineMIIKINYNKSTGTVMLTDDEAGMEATVTQIVDNDDELTFEIPLNVSVYQTQFEEIEIDGNNN
Ga0307986_1029534223300031659MarineMIIKINYNKSTGAVTLTDDEDKMEAIVTQVVDNDDELTFEIPLNVSAYQTQFEEIEIDGNNN
Ga0315320_1000575343300031851SeawaterMIIKINYNKSNGAITLTDDESTMEAVVTQVVDTTDELSFEIPLNVSAYQSQFEEIEIDGNDN
Ga0315315_1001414833300032073SeawaterMIIKINYNKSTGAITLTDDERAMEAVVTQIVDTTDELSFEIPLNVSAYQTQFEEIEIDGNDN

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Bioinformatics & Integrated Biology Lab
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Biomedical Sciences Research Center "Alexander Fleming"
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