NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F105823

Metagenome Family F105823

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F105823
Family Type Metagenome
Number of Sequences 100
Average Sequence Length 44 residues
Representative Sequence MANGIVVLYFSRFGKPLQTHHKVVLDLGAKAIARIKGYKF
Number of Associated Samples 86
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 89.00 %
% of genes near scaffold ends (potentially truncated) 99.00 %
% of genes from short scaffolds (< 2000 bps) 95.00 %
Associated GOLD sequencing projects 82
AlphaFold2 3D model prediction Yes
3D model pTM-score0.39

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (67.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(29.000 % of family members)
Environment Ontology (ENVO) Unclassified
(36.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(42.000 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 16.18%    β-sheet: 23.53%    Coil/Unstructured: 60.29%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.39
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF00072Response_reg 29.00
PF00486Trans_reg_C 8.00
PF06823DUF1236 1.00
PF13340DUF4096 1.00
PF00873ACR_tran 1.00
PF03466LysR_substrate 1.00
PF00529CusB_dom_1 1.00
PF02518HATPase_c 1.00



 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms67.00 %
UnclassifiedrootN/A33.00 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2228664022|INPgaii200_c1190590Not Available588Open in IMG/M
3300000033|ICChiseqgaiiDRAFT_c0841405All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1366Open in IMG/M
3300000597|AF_2010_repII_A1DRAFT_10110570All Organisms → cellular organisms → Bacteria674Open in IMG/M
3300004267|Ga0066396_10056408All Organisms → cellular organisms → Bacteria → Proteobacteria643Open in IMG/M
3300004633|Ga0066395_10206774All Organisms → cellular organisms → Bacteria → Proteobacteria1030Open in IMG/M
3300005332|Ga0066388_102424836All Organisms → cellular organisms → Bacteria → Proteobacteria952Open in IMG/M
3300005332|Ga0066388_105049280All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria670Open in IMG/M
3300005332|Ga0066388_108596881Not Available508Open in IMG/M
3300005555|Ga0066692_10110015All Organisms → cellular organisms → Bacteria → Proteobacteria1646Open in IMG/M
3300005587|Ga0066654_10411970All Organisms → cellular organisms → Bacteria → Proteobacteria737Open in IMG/M
3300005764|Ga0066903_106445325Not Available612Open in IMG/M
3300005983|Ga0081540_1195109All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria742Open in IMG/M
3300006046|Ga0066652_101994992All Organisms → cellular organisms → Bacteria517Open in IMG/M
3300006049|Ga0075417_10638052Not Available544Open in IMG/M
3300006049|Ga0075417_10640023All Organisms → cellular organisms → Bacteria → Proteobacteria543Open in IMG/M
3300006172|Ga0075018_10214795All Organisms → cellular organisms → Bacteria → Proteobacteria918Open in IMG/M
3300006847|Ga0075431_100564803All Organisms → cellular organisms → Bacteria → Proteobacteria1124Open in IMG/M
3300006854|Ga0075425_102367251Not Available590Open in IMG/M
3300009100|Ga0075418_11371502All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium767Open in IMG/M
3300010048|Ga0126373_11784994All Organisms → cellular organisms → Bacteria679Open in IMG/M
3300010048|Ga0126373_12819772Not Available542Open in IMG/M
3300010359|Ga0126376_12454766Not Available569Open in IMG/M
3300010360|Ga0126372_11357312Not Available742Open in IMG/M
3300010360|Ga0126372_13208759Not Available508Open in IMG/M
3300010361|Ga0126378_10772424All Organisms → cellular organisms → Bacteria → Proteobacteria1071Open in IMG/M
3300010361|Ga0126378_11532528All Organisms → cellular organisms → Bacteria → Proteobacteria756Open in IMG/M
3300010366|Ga0126379_11856016All Organisms → cellular organisms → Bacteria706Open in IMG/M
3300010366|Ga0126379_12522985All Organisms → cellular organisms → Bacteria → Proteobacteria612Open in IMG/M
3300010366|Ga0126379_12838883Not Available580Open in IMG/M
3300010376|Ga0126381_104854590Not Available517Open in IMG/M
3300012022|Ga0120191_10039834All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium774Open in IMG/M
3300012198|Ga0137364_11132348All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Beijerinckia → Beijerinckia indica588Open in IMG/M
3300012200|Ga0137382_10565049All Organisms → cellular organisms → Bacteria → Proteobacteria811Open in IMG/M
3300012201|Ga0137365_10966682Not Available619Open in IMG/M
3300012209|Ga0137379_10698721All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → unclassified Phenylobacterium → Phenylobacterium sp. J367920Open in IMG/M
3300012210|Ga0137378_11213478All Organisms → cellular organisms → Bacteria670Open in IMG/M
3300012357|Ga0137384_10498525All Organisms → cellular organisms → Bacteria → Proteobacteria1000Open in IMG/M
3300012361|Ga0137360_11397548Not Available603Open in IMG/M
3300012361|Ga0137360_11763449Not Available525Open in IMG/M
3300012362|Ga0137361_10996817All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → unclassified Phenylobacterium → Phenylobacterium sp. J367757Open in IMG/M
3300012923|Ga0137359_11764387Not Available506Open in IMG/M
3300012988|Ga0164306_10504877All Organisms → cellular organisms → Bacteria931Open in IMG/M
3300012989|Ga0164305_10206786All Organisms → cellular organisms → Bacteria → Proteobacteria1385Open in IMG/M
3300016294|Ga0182041_10669416All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium918Open in IMG/M
3300016445|Ga0182038_11171587All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae684Open in IMG/M
3300018028|Ga0184608_10017737All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium2538Open in IMG/M
3300018469|Ga0190270_10001638All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales10526Open in IMG/M
3300020002|Ga0193730_1168298All Organisms → cellular organisms → Bacteria564Open in IMG/M
3300021078|Ga0210381_10218594All Organisms → cellular organisms → Bacteria669Open in IMG/M
3300021080|Ga0210382_10254715All Organisms → cellular organisms → Bacteria768Open in IMG/M
3300021444|Ga0213878_10093426All Organisms → cellular organisms → Bacteria1215Open in IMG/M
3300021560|Ga0126371_10738355All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1132Open in IMG/M
3300021560|Ga0126371_12740595Not Available598Open in IMG/M
3300021560|Ga0126371_12916457All Organisms → cellular organisms → Bacteria → Proteobacteria580Open in IMG/M
3300021560|Ga0126371_13294879Not Available546Open in IMG/M
3300021968|Ga0193698_1023582All Organisms → cellular organisms → Bacteria807Open in IMG/M
3300025915|Ga0207693_11227390All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Beijerinckia → Beijerinckia indica564Open in IMG/M
3300025928|Ga0207700_10248649All Organisms → cellular organisms → Bacteria → Proteobacteria1518Open in IMG/M
3300025929|Ga0207664_11258480All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense659Open in IMG/M
3300026310|Ga0209239_1033239All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2435Open in IMG/M
3300027502|Ga0209622_1012343All Organisms → cellular organisms → Bacteria → Proteobacteria1451Open in IMG/M
3300027527|Ga0209684_1066300Not Available561Open in IMG/M
3300027874|Ga0209465_10068813All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD00171714Open in IMG/M
3300028536|Ga0137415_10491155Not Available1035Open in IMG/M
3300028878|Ga0307278_10556145All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Leo121500Open in IMG/M
3300031564|Ga0318573_10396383All Organisms → cellular organisms → Bacteria742Open in IMG/M
3300031573|Ga0310915_10841597All Organisms → cellular organisms → Bacteria → Proteobacteria644Open in IMG/M
3300031679|Ga0318561_10280937All Organisms → cellular organisms → Bacteria909Open in IMG/M
3300031736|Ga0318501_10793860Not Available524Open in IMG/M
3300031744|Ga0306918_11545153Not Available506Open in IMG/M
3300031748|Ga0318492_10534024Not Available623Open in IMG/M
3300031769|Ga0318526_10161245All Organisms → cellular organisms → Bacteria → Proteobacteria913Open in IMG/M
3300031770|Ga0318521_10586505Not Available673Open in IMG/M
3300031770|Ga0318521_10866879Not Available551Open in IMG/M
3300031771|Ga0318546_11306023Not Available509Open in IMG/M
3300031782|Ga0318552_10173903All Organisms → cellular organisms → Bacteria1086Open in IMG/M
3300031795|Ga0318557_10126170All Organisms → cellular organisms → Bacteria1147Open in IMG/M
3300031797|Ga0318550_10344449All Organisms → cellular organisms → Bacteria → Proteobacteria722Open in IMG/M
3300031798|Ga0318523_10202669All Organisms → cellular organisms → Bacteria991Open in IMG/M
3300031799|Ga0318565_10580381Not Available539Open in IMG/M
3300031805|Ga0318497_10652724All Organisms → cellular organisms → Bacteria → Proteobacteria590Open in IMG/M
3300031832|Ga0318499_10152809All Organisms → cellular organisms → Bacteria900Open in IMG/M
3300031833|Ga0310917_10644711All Organisms → cellular organisms → Bacteria718Open in IMG/M
3300031879|Ga0306919_10419790All Organisms → cellular organisms → Bacteria1027Open in IMG/M
3300031897|Ga0318520_10368244All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → unclassified Phenylobacterium → Phenylobacterium sp. J367874Open in IMG/M
3300031897|Ga0318520_10458918All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → unclassified Phenylobacterium → Phenylobacterium sp. J367783Open in IMG/M
3300031910|Ga0306923_10102647All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria3228Open in IMG/M
3300031945|Ga0310913_10681231All Organisms → cellular organisms → Bacteria → Proteobacteria727Open in IMG/M
3300031947|Ga0310909_11272498All Organisms → cellular organisms → Bacteria → Proteobacteria592Open in IMG/M
3300031954|Ga0306926_10802267All Organisms → cellular organisms → Bacteria1135Open in IMG/M
3300031959|Ga0318530_10076450All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD00171303Open in IMG/M
3300032009|Ga0318563_10365250All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → unclassified Phenylobacterium → Phenylobacterium sp. J367781Open in IMG/M
3300032010|Ga0318569_10438376Not Available609Open in IMG/M
3300032076|Ga0306924_10116418All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria3037Open in IMG/M
3300032090|Ga0318518_10439487Not Available668Open in IMG/M
3300032091|Ga0318577_10618317Not Available514Open in IMG/M
3300032094|Ga0318540_10565036Not Available548Open in IMG/M
3300033289|Ga0310914_11304048Not Available628Open in IMG/M
3300033290|Ga0318519_10645956Not Available645Open in IMG/M
3300033550|Ga0247829_11693902Not Available521Open in IMG/M



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil29.00%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil15.00%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil11.00%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil8.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil7.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil6.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil5.00%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere5.00%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment2.00%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere2.00%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment1.00%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds1.00%
Bulk SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil1.00%
TerrestrialEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial1.00%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil1.00%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil1.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil1.00%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil1.00%
Agricultural SoilEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil1.00%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere1.00%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2228664022Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300000033Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300000597Forest soil microbial communities from Amazon forest - 2010 replicate II A1EnvironmentalOpen in IMG/M
3300004267Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBioEnvironmentalOpen in IMG/M
3300004633Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBioEnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005555Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141EnvironmentalOpen in IMG/M
3300005587Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005983Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1Host-AssociatedOpen in IMG/M
3300006046Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101EnvironmentalOpen in IMG/M
3300006049Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1Host-AssociatedOpen in IMG/M
3300006172Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014EnvironmentalOpen in IMG/M
3300006847Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5Host-AssociatedOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300009100Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2Host-AssociatedOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300012022Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - C6EnvironmentalOpen in IMG/M
3300012198Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012200Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012201Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012209Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012210Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012357Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012362Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaGEnvironmentalOpen in IMG/M
3300012923Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaGEnvironmentalOpen in IMG/M
3300012988Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MGEnvironmentalOpen in IMG/M
3300012989Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MGEnvironmentalOpen in IMG/M
3300016294Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178EnvironmentalOpen in IMG/M
3300016445Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108EnvironmentalOpen in IMG/M
3300018028Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coexEnvironmentalOpen in IMG/M
3300018469Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 TEnvironmentalOpen in IMG/M
3300020002Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1EnvironmentalOpen in IMG/M
3300021078Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redoEnvironmentalOpen in IMG/M
3300021080Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redoEnvironmentalOpen in IMG/M
3300021444Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R02EnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300021968Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c1EnvironmentalOpen in IMG/M
3300025915Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025928Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025929Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026310Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300027502Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027527Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio (SPAdes)EnvironmentalOpen in IMG/M
3300027874Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)EnvironmentalOpen in IMG/M
3300028536Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300028878Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117EnvironmentalOpen in IMG/M
3300031564Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21EnvironmentalOpen in IMG/M
3300031573Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111EnvironmentalOpen in IMG/M
3300031679Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23EnvironmentalOpen in IMG/M
3300031736Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21EnvironmentalOpen in IMG/M
3300031744Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)EnvironmentalOpen in IMG/M
3300031748Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22EnvironmentalOpen in IMG/M
3300031769Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24EnvironmentalOpen in IMG/M
3300031770Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17EnvironmentalOpen in IMG/M
3300031771Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19EnvironmentalOpen in IMG/M
3300031782Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20EnvironmentalOpen in IMG/M
3300031795Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19EnvironmentalOpen in IMG/M
3300031797Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23EnvironmentalOpen in IMG/M
3300031798Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19EnvironmentalOpen in IMG/M
3300031799Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21EnvironmentalOpen in IMG/M
3300031805Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23EnvironmentalOpen in IMG/M
3300031832Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25EnvironmentalOpen in IMG/M
3300031833Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178EnvironmentalOpen in IMG/M
3300031879Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)EnvironmentalOpen in IMG/M
3300031897Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16EnvironmentalOpen in IMG/M
3300031910Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)EnvironmentalOpen in IMG/M
3300031945Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082EnvironmentalOpen in IMG/M
3300031947Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000HEnvironmentalOpen in IMG/M
3300031954Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)EnvironmentalOpen in IMG/M
3300031959Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24EnvironmentalOpen in IMG/M
3300032009Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19EnvironmentalOpen in IMG/M
3300032010Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22EnvironmentalOpen in IMG/M
3300032076Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)EnvironmentalOpen in IMG/M
3300032090Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22EnvironmentalOpen in IMG/M
3300032091Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25EnvironmentalOpen in IMG/M
3300032094Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25EnvironmentalOpen in IMG/M
3300033289Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108EnvironmentalOpen in IMG/M
3300033290Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15EnvironmentalOpen in IMG/M
3300033550Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
INPgaii200_119059032228664022SoilMANGIVVLYFSRFGKPLQTHHKVVLDLGAKAIAKLKGYEF
ICChiseqgaiiDRAFT_084140513300000033SoilMPRGVVVVYFSRFGKPLQXHHKVVLDLGAKAIAKIKGYEFGGHYDTAHHYSGPLFFVP
AF_2010_repII_A1DRAFT_1011057043300000597Forest SoilMANGVVVLYVSQFDKSLQWHHKVVLDAVAKAIAKIKRYDFG
Ga0066396_1005640833300004267Tropical Forest SoilMARGVVVVYFSRFGKPLQRHHKVVLDLNAKAIAKIKRYEFGGHY
Ga0066395_1020677413300004633Tropical Forest SoilMDEGSITMANGTVVLYFSRFGKPLQTHHKVVLDLGAKAIAKLKG
Ga0066388_10242483623300005332Tropical Forest SoilVATGTVVTYFSRFGKPLQLHHKAVLDLGAKAIARIVGYEFG
Ga0066388_10504928033300005332Tropical Forest SoilMANGIVVLYVSRFGKPLQAHHKVVLDLGAKAIAKIKGYKF
Ga0066388_10859688113300005332Tropical Forest SoilMANGVVVLYFSQFDKSLQWHHKVVLDAVAKAIAKIKRYDFGG
Ga0066692_1011001543300005555SoilVHARLTIMANGIVVLYFSRFGKPLQTHHKVVLDLGA
Ga0066654_1041197043300005587SoilMANGIVVLYFSRFGKPLQTHHKVVLDLGAKAIAKLKGYEFGGHYDAAYGYSGPL
Ga0066903_10644532513300005764Tropical Forest SoilMANGVVVLYFSHFDKLLQWHHKVVLDATAKAIAKIKHYDFGGQYEGAV*
Ga0081540_119510913300005983Tabebuia Heterophylla RhizosphereMTRGVVVVYFSGLGEPLQWHHKVVVDANAKAIAKIKGYAFKGRHEEG
Ga0066652_10199499223300006046SoilMASGNVDIYFSPFGKPLQTHHQIVLDLAAKAIAKI
Ga0075417_1063805233300006049Populus RhizosphereMARGLVVVCSSRFGKPLQWHHKVVLDLGAKAIARIKGYDFGGHYDT
Ga0075417_1064002323300006049Populus RhizosphereMPRGVVVVYFSQFGKPLQAHHKVVLDLGAKAIAKIKGYDFGGHY
Ga0075018_1021479513300006172WatershedsMANGTVVLYFSRFGKPLQWHHKVVLDLDAKAIAGIKGYKFGGLYDPEHNYSGPLFF
Ga0075431_10056480333300006847Populus RhizosphereMARGLVVVCSSRFGKPLQWHHKVVLDLGAKAIARIKGYEFGGHYDTA
Ga0075425_10236725113300006854Populus RhizosphereMDEGSITMARGVVVVYFSRFGKPLQTHHKVVLDLGAKAI
Ga0075418_1137150213300009100Populus RhizosphereMARGVVVVYLSWFGKPLQRHHKVVLHAGSRAIANIK
Ga0126373_1178499413300010048Tropical Forest SoilMANGTVVLYVSRFGKPLQAHHKVVLDLNAKAIAKL
Ga0126373_1281977213300010048Tropical Forest SoilMKDRLPMARGVVVVYFSRFGKPLQRHHKVVLDLNAKAIAK
Ga0126376_1245476613300010359Tropical Forest SoilMANGTVVLYVSRFGKPLQAHHKVVLDLNAKAIAKLKGCKFGGRYDPEHNYSGPLFF
Ga0126372_1135731223300010360Tropical Forest SoilMDEGSITMANGTVVLYVSRFGKPLQTHHKVVLDLGAKAIA
Ga0126372_1320875913300010360Tropical Forest SoilMARGVVMVYFSRFGKPLQTHHKAVLDLGAKAIAKIKGYKFGGHYD
Ga0126378_1077242433300010361Tropical Forest SoilMANGTVVLYVSRFGKPLQTHHKVVLELDAKAIASIKGYKFGGRYYPEHN
Ga0126378_1153252823300010361Tropical Forest SoilMDEGSIIMATGVVVVYFSQFGKPLQTHHKVVLDLDAKAIA
Ga0126379_1185601613300010366Tropical Forest SoilMASGNVLIYFSRFGKPLQTHHKVVLDLATKAIARING
Ga0126379_1252298523300010366Tropical Forest SoilMPSGVAVVYFSRFGKPLQAHHKVVLDLGAKAIAKLKGYEFGG
Ga0126379_1283888313300010366Tropical Forest SoilMANGIVLLYFSRFGKPLQAHHKAVLDSDAKAIAKIKGYEFGGHY
Ga0126381_10485459013300010376Tropical Forest SoilMTVANGVVVVYLSRFGKPMQWHHKVVLDAGAKAIAKIKGYD
Ga0120191_1003983413300012022TerrestrialMARGVVVIYFSWFGKPLQRHHKVVLDAGSKAIANIKGYD
Ga0137364_1113234813300012198Vadose Zone SoilLIAVTRGVVVVYFSRFGKPLQWHHKVVLESSAKTIAAIKG
Ga0137382_1056504913300012200Vadose Zone SoilMPRGLVVVYFSRFGKPLQAHHKAVLDLNAEAIAQIKGYKFGGHYDTANDYS
Ga0137365_1096668223300012201Vadose Zone SoilMANGIVVLYFSRFGKPLQTHHKVVLDLGAKAIARI
Ga0137379_1069872113300012209Vadose Zone SoilMANGIVVLYFSRFGKPLQTHHKVVLDLDAKAIARMKGYKFGGPYDPEHNYSGPL
Ga0137378_1121347813300012210Vadose Zone SoilMANGIVVLYFSRFGKPLQTHHKVVLDLGAKAIARIKGYKF
Ga0137384_1049852513300012357Vadose Zone SoilMARGVVVVYFSWFGKPLQWHHKVVLDLGAKAIAKIKG
Ga0137360_1139754813300012361Vadose Zone SoilMANGIVVLYFSRFGKPLQWHHKVVLDLGAKAIARIKGHKFG
Ga0137360_1176344923300012361Vadose Zone SoilMANGIVVLYFSRFGKPLQTHHKVVLDLDAKAIARIKGYKFG
Ga0137361_1099681723300012362Vadose Zone SoilMANGIVVLYFSRFGKPLQWHHKVVLDLGAKAIARIKGHKFGGLYDPEHNYSG
Ga0137359_1176438723300012923Vadose Zone SoilMANGIVVLYFSRFGKPLQRHHKVVLDLGAKAIAKLKGYEF
Ga0164306_1050487713300012988SoilMANGNVVIYSSRFGKPLQTHHKVVLELAAQTIAKIKAYDFGGNYDPA
Ga0164305_1020678613300012989SoilMPRGVVVVYFSRFGKPLQAHHKVVLDLGAKAIAKIKGYEFGGHYDTAHHYSGPLF
Ga0182041_1066941623300016294SoilMANGTVVLYVSRFGKPLQTHHKVVLDLDAKAIASIKGYEFGGPYDP
Ga0182038_1117158723300016445SoilMANGIVVLYFSRFGKPLQTHHKVVLDLGAKAIAKLKGYEFGGHYDA
Ga0184608_1001773713300018028Groundwater SedimentMANGNVVIYFSRFGKPLQTHHKVVLDLAARTIAKIKGYDFG
Ga0190270_1000163813300018469SoilMASGNVLIYFSRFGKPLQTHHKIVFNLAAKTIAKIKGYDFGGHYDTARDY
Ga0193730_116829813300020002SoilMASGNVLIYFSRFGKPLQTHHKVVLDLAARTIAKIKG
Ga0210381_1021859413300021078Groundwater SedimentMAIGNVLIYFSRFGKPLQTHHKIVLNLAAETIAKIKGY
Ga0210382_1025471513300021080Groundwater SedimentMANGNVVIYFSRFGKPLQTHHKVVLDLAARTIAKIKGYD
Ga0213878_1009342633300021444Bulk SoilMVDGTVVLYVSRFGKPLQTHHKVVLGLDAKAIAKLKGY
Ga0126371_1073835533300021560Tropical Forest SoilMDEGSITMANGTVVLYFSRFGKPLQTHHKVVLDLGAKAIAKLK
Ga0126371_1274059513300021560Tropical Forest SoilMANGVVVLYVSQFDKSLQWHHKVVLDTVAKTIAKIKRYDF
Ga0126371_1291645713300021560Tropical Forest SoilMDEGSITMANGTVVLYFSRFGKLLQMHHKVVLELDAKAI
Ga0126371_1329487913300021560Tropical Forest SoilMANGTVVLYVSRFGKPLQAHHKVVLDLNAKAIAKLK
Ga0193698_102358223300021968SoilMASGNVLIYFSRFGKPLQTHHKIVLNLAAETIAKIKGYDFGGHYDTARDYPGPL
Ga0207693_1122739023300025915Corn, Switchgrass And Miscanthus RhizosphereVARGVVVVYFSRFGKPLQWHHRVVLESGAKATAAILGYEFAGRYERPGDH
Ga0207700_1024864913300025928Corn, Switchgrass And Miscanthus RhizosphereVHARLTIMANGIVVLYFSRFGKPLQTHHKVVLDLGAKAI
Ga0207664_1125848033300025929Agricultural SoilMANGIVVLYFSRFGKPLQTHHKVVLDLGAKAIAKLKG
Ga0209239_103323913300026310Grasslands SoilVHARLTIMANGIVVLYFSRFGKPLQTHHKVVLDLGAKAIAKLKGYEFGGHYDA
Ga0209622_101234313300027502Forest SoilMARGVVVVYFSWFGKPLQWHHKVVLDLDAKAIARIKGYKFGGPYDPEHN
Ga0209684_106630013300027527Tropical Forest SoilMARGVVVVYFSRFGKPLQRHHKVVLDLNAKAIAKIKRYEF
Ga0209465_1006881313300027874Tropical Forest SoilMANGTVVLYFSRFGKPLQTHHKVVLDLDAKAIASIKGYEFG
Ga0137415_1049115513300028536Vadose Zone SoilMANGTVVLYFSRFGKPLQWHHKVVLDLGAKAIARIKGHKFGGLYDPEHNY
Ga0307278_1055614523300028878SoilMANGNVVIYFSRFGKPLQMHHKVVLDLAARTIAKIKGYDFGGNYDPARDYPGPLYFVPD
Ga0318573_1039638323300031564SoilMANGTVVLYASRFGKPLQTHHKVVLDLNAKAIARIKGYKFE
Ga0310915_1084159713300031573SoilMDEGSIIMATGVVVVYFSRFGKPLQTHHKVVLGLDAKAIAKLKGYKFGGHY
Ga0318561_1028093723300031679SoilMANGTVVLYVSRFGKPLQTHHKVVLDLDAKAIASIKGYKFE
Ga0318501_1079386013300031736SoilMANGTVVLYFSRFGKPLQTHHKVVLDLNAKAIASIKGYKFEGPYDPEHNYSGPLFF
Ga0306918_1154515323300031744SoilMANGIVVLHFSRFGKPLQTHHKAVLDLDAKAIAKI
Ga0318492_1053402413300031748SoilMANGTVVLYVSRFGKPLQTHHKVVLDLDAKAIARIKGYK
Ga0318526_1016124513300031769SoilMDEGSITMATGVVVVYFSRFGKPLQTHHKVVLDLGAKSIAKIKGYDFSGHYESG
Ga0318521_1058650533300031770SoilMTNGIVVLYSSRFGKPLQTHHKVVLDLDAKAIARIKGYEFGGPYDPEHNY
Ga0318521_1086687913300031770SoilMANGTVVLYVSRFGKPLQTHHKVVLDLDAKAIASIKGYKFGGPYDPEYN
Ga0318546_1130602323300031771SoilMANGTVVLYFSRFGKPLQTHHKVVLDLNAKAIASIKGYK
Ga0318552_1017390313300031782SoilMANGTVVLYVSRFGKPLQTHHKVVLDLDAKAIASIKGYKFGGPYDPEYNYSG
Ga0318557_1012617013300031795SoilMANGTVVLYFSRFGKPLQTHHKVVLDLDAKAIARIKGYKFGGPYDPEHNY
Ga0318550_1034444913300031797SoilMATGVVVVYFSRFGKPLQTHHKVVLDLGAKAIAKLKGYKFGGAYDPEHSY
Ga0318523_1020266923300031798SoilMANGTVVLYFSRFGKPLQTHHKVVLDLDAKAIARIKGYK
Ga0318565_1058038113300031799SoilMATGVVVVYFSRFGKPLQTHHKVVLDLGAKAIAKLKGYK
Ga0318497_1065272423300031805SoilMDEGSITMATGVVVVYFSRFGKPMQWHHKVVLNAGAKAIAKIK
Ga0318499_1015280923300031832SoilMANGTVVLYFSRFGKPLQTHHKVVLDLNAKAIASIK
Ga0310917_1064471113300031833SoilMANGTVVLYFSRFGKPLQTHHKVVLDLDAKAIAGIKGYKFGGPYDPEH
Ga0306919_1041979023300031879SoilMANGTVVLYVSRFGKPLQTHHKVVLDLNAKAIASIKGYKFEGRYDPEHN
Ga0318520_1036824413300031897SoilMANGTVVLYFSRFGKPLQTHHKVVLDLNAKAIASIKGYKFEGPYDPEHNY
Ga0318520_1045891813300031897SoilMTNGIVVLYSSRFGKPLQTHHKVVLDLDAKAIARIKGYE
Ga0306923_1010264743300031910SoilMANGTVVLYASRFGKPLQTHHKVVLDLNAKAIARIKG
Ga0310913_1068123113300031945SoilMATGVVVVYFSRFGKPLQTHHKVVLDLGAKAIAKLKGYKFGGAYDPEHSYSGPLFF
Ga0310909_1127249823300031947SoilMPRGVVVVYFSRFGKPLQAHHKVVLDLNAKAIAKIK
Ga0306926_1080226723300031954SoilMANGTVVLYFSRFGKPLQTHHKVVLDLDAKAIAGIK
Ga0318530_1007645013300031959SoilMANGTVVLYFSRFGKPLQTHHKVVLDLDAKAIASIK
Ga0318563_1036525013300032009SoilMANGIVVLYFSRFGKPLQTHHKAVLDSDAKAIAKIKGYEFGGHYDTAHD
Ga0318569_1043837623300032010SoilMANGTVVLYASRFGKPLQTHHKVVLDLNAKAIARIK
Ga0306924_1011641813300032076SoilMANGIVVLYFSRFGKPLQTHHKVVLDLDAKAIARIKGYKFGGLYDPEHNYSS
Ga0318518_1043948713300032090SoilMANGTVVLYVSRFGKPLQTHHKVVLDLNAKAIASIKGYKFEGPYDPEHNYSGPLFF
Ga0318577_1061831713300032091SoilMANGTVVLYASRFGKPLQTHHKVVLDLNAKAIARIKGYKFEGPYDPE
Ga0318540_1056503613300032094SoilMANGTVVLYFSRFGKPLQTHHKVVLDLNAKAIASIKGYKFEG
Ga0310914_1130404813300033289SoilMANGTVVLYVSRFGKPLQTHHKVVLDLNAKAIASIKGYKFEGPYDPEHNYS
Ga0318519_1064595613300033290SoilMANGTVVLYVSRFGKPLQTHHKVVLDLDAKAIASIKGYKFEGPYDPDHS
Ga0247829_1169390223300033550SoilMASGNVLIYFSRFGKPLQTHHKIVFNLAAKTIAKIKGYDFGGHYDTARDYSGPLYF


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.