NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F105814

Metagenome / Metatranscriptome Family F105814

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F105814
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 101 residues
Representative Sequence LSIDDLAAVRNAVVVSTAKGTLFLSRDGGKTWGHMDGPNAEGALSALRSREAGNQLVAASATEGLFVLEMGSASSASADPVSTSPAAQH
Number of Associated Samples 91
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 2.33 %
% of genes near scaffold ends (potentially truncated) 83.00 %
% of genes from short scaffolds (< 2000 bps) 78.00 %
Associated GOLD sequencing projects 85
AlphaFold2 3D model prediction Yes
3D model pTM-score0.48

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (78.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(24.000 % of family members)
Environment Ontology (ENVO) Unclassified
(25.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(37.000 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      
Full Alignment
Alignment of all the sequences in the family.
Sorting
Filter
Selection
Vis.elements
Color scheme
Extras
Export
Help

IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118.120.122.124.126.128.130.132.134.136.138.140.142.144.146.148.150.152.154.156
1JGI12053J15887_104883241
2JGIcombinedJ26739_1016488522
3Ga0070731_101162093
4Ga0066691_105468861
5Ga0070766_108942621
6Ga0075023_1003491451
7Ga0075024_1004038231
8Ga0075029_1007439191
9Ga0075015_1000752643
10Ga0075030_1003194041
11Ga0075030_1004212471
12Ga0075018_103286921
13Ga0075018_104631891
14Ga0075018_108495751
15Ga0075014_1003492972
16Ga0075021_105491762
17Ga0066793_108390971
18Ga0099828_100393564
19Ga0099828_107226272
20Ga0105240_113639691
21Ga0099792_112033751
22Ga0116215_11150931
23Ga0116216_100602281
24Ga0126373_111451571
25Ga0134124_105793401
26Ga0137391_114172381
27Ga0137393_113302992
28Ga0120118_10618251
29Ga0137389_113356301
30Ga0137376_114413171
31Ga0137378_113217662
32Ga0137384_104931242
33Ga0137390_100349946
34Ga0137398_100997511
35Ga0137359_108586481
36Ga0137413_102270671
37Ga0137419_107914462
38Ga0153915_118511331
39Ga0137410_101635902
40Ga0137410_105297762
41Ga0181538_101818071
42Ga0181523_107301911
43Ga0137420_10321042
44Ga0137420_10321051
45Ga0187824_101990431
46Ga0187824_103303941
47Ga0187806_12134271
48Ga0187825_100814262
49Ga0187801_100190673
50Ga0187823_103833881
51Ga0187804_100244121
52Ga0179592_102728101
53Ga0210403_110839461
54Ga0210395_108093291
55Ga0179596_105922012
56Ga0210404_108458862
57Ga0210400_102598892
58Ga0210405_105325271
59Ga0210408_111321901
60Ga0210389_106785161
61Ga0210386_111142192
62Ga0210383_114616862
63Ga0210391_112822801
64Ga0210409_110345631
65Ga0242666_11125123
66Ga0242657_11503701
67Ga0224563_10106582
68Ga0228598_10471401
69Ga0207663_112758101
70Ga0207687_106200072
71Ga0209131_11697742
72Ga0257151_10233051
73Ga0257167_10321141
74Ga0179587_103812622
75Ga0209731_10624271
76Ga0208044_10243111
77Ga0209217_11757391
78Ga0209388_11536901
79Ga0209118_11033631
80Ga0209283_106598901
81Ga0209275_101829083
82Ga0209068_104346271
83Ga0209488_100289291
84Ga0209006_103701061
85Ga0209698_103013632
86Ga0209698_105996521
87Ga0209698_106549681
88Ga0311338_117281761
89Ga0075394_111999581
90Ga0170834_1049714791
91Ga0170824_1182206201
92Ga0302325_130738071
93Ga0310686_1130607772
94Ga0265342_101994301
95Ga0307475_111219711
96Ga0307479_117008291
97Ga0307470_100536171
98Ga0307471_1042430372
99Ga0348332_114494731
100Ga0334790_159585_456_671
Powered by MSAViewer


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 29.91%    Coil/Unstructured: 70.09%
Feature Viewer
Position :
0
Zoom :
x 1
+ Add Multiple Variants

Enter the variants

Position

Original

Variant

Get Predictions
Get Predictions

Enter the variants

Position

Original

Variant

1020304050607080LSIDDLAAVRNAVVVSTAKGTLFLSRDGGKTWGHMDGPNAEGALSALRSREAGNQLVAASATEGLFVLEMGSASSASADPVSTSPAAQHSequenceα-helicesβ-strandsCoilSS Conf. score
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.48
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Visualization
All Organisms
Unclassified
22.0%78.0%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts

Associated Scaffolds





 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Bog
Freshwater Wetlands
Freshwater Sediment
Watersheds
Soil
Vadose Zone Soil
Terrestrial Soil
Tropical Forest Soil
Surface Soil
Peatlands Soil
Permafrost
Soil
Grasslands Soil
Soil
Forest Soil
Hardwood Forest Soil
Prmafrost Soil
Forest Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Soil
Palsa
Plant Litter
Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Rhizosphere
7.0%15.0%24.0%3.0%16.0%4.0%6.0%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts



Associated Samples


Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12053J15887_1048832413300001661Forest SoilSGEATVVLASDRGVFISRDAGGSWRQANLSELSLEDMASVKSAIVVSTAKGVLFVSRDSGKTWGHLEGPSGDNSLSALRSRESGNQLVAASATEGLFVLDMGSASSASVDPVGTLQAPKP
JGIcombinedJ26739_10164885223300002245Forest SoilLFVSRDAGNTWGHLDSPNGDSLLSALRSRDSGNQLMVASATEGLFVLDMGSAASASANPVDISSTPSNSGTGR*
Ga0070731_1011620933300005538Surface SoilESWRQANLTELSIDDLTPVRGAIVVSTDKGSLFLSRDAGKTWGHLDSPNAENTLSALRSHEAGNQLIVASSTEGLFVLDMGAASSALADPVAGSPVPRR*
Ga0066691_1054688613300005586SoilGEATVVLASDRGVFISRDAGGSWRQANLSELSLEDMASVKSAIVVSTAKGVLFVSRDSGKTWGHLEGPSGDNSLSALRSRESGNQLVAASATEGLFVLDMGSASSASVDPVGTLQAPKP*
Ga0070766_1089426213300005921SoilLFLSRDGGKTWGHMDGPNAEGALSALRSREAGNQLIAASDTEGLFVLEMGAASSASAGPAPASPVPQH*
Ga0075023_10034914513300006041WatershedsSDENTVVLASDHGVFVSRDAGGSWQQANLSELSIDDLASVRNAVVVSTAKGALFLSRDGGKTWGHLDGPNAEGALSALRSRDAGNQLVAASATEGLFVLEMGSASSASTNSTPASPAARQ
Ga0075024_10040382313300006047WatershedsRDTGESWHQANFSELSIDDLTAVRNAVVVSTAKGTLFLSRDGGKTWGHMDGPNAEGALSALRSREAGNQLVAASATEGLYVLEMGSASSASADSVPTSPAAQH*
Ga0075029_10074391913300006052WatershedsIAPVRNAVVVSTAKGTLFLSRDAGKTWGHMTGPTADSALSALRSREAGNQLVAASATEGLFVLDMASASSASADSIPASPAGQQ*
Ga0075015_10007526433300006102WatershedsLFLSRDGGKTWGHMDGPNAEGALSALRSREAGNQLVAASATEGLYVLEMGSASSASADSVPTSPAAQH*
Ga0075030_10031940413300006162WatershedsYLSRDAGKTWGHMQGPNADNSISALRSREAGNQLVAASATEGLFVMEMGSASPSSANASSVLPAGQK*
Ga0075030_10042124713300006162WatershedsFVSRDTGESWHQANLSELLIDDIAPVRNAVVVSTAKGTLFLSRDAGKTWGHMTGPTADSALSALRSREAGNQLVAASATEGLFVLDMASASSASADSIPASPAGQQ*
Ga0075018_1032869213300006172WatershedsSWHQANLSELLIDDIAPVRNAVVVSTAKGTLFLSRDAGKTWGHMTGPTADSALSALRSREAGNQLVAASATEGLFVLDMASASSASADSIPASPAGQQ*
Ga0075018_1046318913300006172WatershedsVSWRQANLSELQIDDMTPLKNALVVSSARGALFLSRDAGKTWGHLDGPNADSAFSALRSRDAGNQLVAASATEGLFVLDMGTAASASAELDGDLPLRKQ*
Ga0075018_1084957513300006172WatershedsENTVVLASDHGVFVSRDAGESWHQANISELSIEDLASVRNAVVVSTAKGSLFLSRDAGKTWGHMDGPNAEGALSALRSREAGNQLVAASATEGLFVLEMGSASFASTDSIPASPSVQQ*
Ga0075014_10034929723300006174WatershedsPFEPRGSLHLHPTDENSVVIASDHGVFVSRDTGESWHQANLSELLIDDIAPVRNAVVVSTAKGTLFLSRDAGKTWGHMTGPTADSALSALRSREAGNQLVAASATEGLFVLDMASASSASADSIPASPAGQQ*
Ga0075021_1054917623300006354WatershedsSLHLHPTDENTVVLASDHGVFVSRDAGESWNQANISELAIDDLAPVRNNVVVSTAAGELFLSRDSGKTWGHMDGPNTDGPLSALRSRESGNQLVAASATEGLYVLEMGNAASASTDANSDSPAVNK*
Ga0066793_1083909713300009029Prmafrost SoilSELSIDDLAAVRNAVVVSTAKGTLFLSRDGGKTWGRMDGPNAEGTLSALRSREAGNQLVVASATEGLFVIEMGSASSASADSIPASPAGKQ*
Ga0099828_1003935643300009089Vadose Zone SoilSMDDMASVKSAIVVSTTRGALFLSRDAGKTWGHLEGPNGDSSFSALRSRESGNQLVAASATEGLFVLDMGSASSASADPVGTPLAPTQ*
Ga0099828_1072262723300009089Vadose Zone SoilDLAPVRNGVVVSTESGTLFFSRDGGKSWGKMDGPAVDSTLSALRSRQAGSQLVAASSTEGLFILDMGSASSASADPVDASPTGKQ*
Ga0105240_1136396913300009093Corn RhizosphereANLSELSIEELAPVRNALVVSTEKGILYVSRDGAKSWVRLEGPNADGALSALRSREAGNQLVAASATEGLFVLEIGSASLASADSMPASQTASH*
Ga0099792_1120337513300009143Vadose Zone SoilKGVLFVSRDSGKTWGHLEGPSGDNSLSALRSRESGNQLVAASATEGLFVLDMGSASSASVDPAGPLQAPKP*
Ga0116215_111509313300009672Peatlands SoilLHLSDENTVVLASDHGVFVSRDTGESWHQANLSELSIDDLAAVRNAVVVSTEQGTLFLSRDGGKTWGHMDGPNAEGTLSALRSREARNQLVAASATEGLYVLEMGSASSASADPEPASPAAQH*
Ga0116216_1006022813300009698Peatlands SoilLSIDDLAAVRNAVVVSTEQGTLFLSRDGGKTWGHMDGPNAEGTLSALRSREARNQLVAASATEGLYVLEMGSASSASADPEPASPAAQH*
Ga0126373_1114515713300010048Tropical Forest SoilRDAGESWHQASLSELLIDDMTPVRDSVVVSTAKGTLFLSRDGGKTWGPMSGPSVDSSLSALRSRDEGNQLVAASATEGLFVLDMGLASSASADEAPDSPAPSR*
Ga0134124_1057934013300010397Terrestrial SoilKNWVSRALPFEERGPVHLHPADDNAVVLASGHGVYVSRDSGESWHQANLSELSIEELAPVRNALVVSTEKGILYVSRDGAKSWVRLEGPNADGALSALRSREAGNQLVAASATEGLFVLEIGSASLASADSMPASQTASH*
Ga0137391_1141723813300011270Vadose Zone SoilPRGSLQLYPSDENTVVLASDHGFFVSRDTGESWHQANLSELSIDDLAAVRNAVVVSTAKGTLFLSRDAGKTWGHMEGPSAEGALSALRSREAGNQLVAASSTEGLFVLEMGSASSASVDTIPASPAAKQ*
Ga0137393_1133029923300011271Vadose Zone SoilSVRNAVVVSTTKGTLFLSRDGGKTWGHLDGPNAEGTLSALRSREAGNQLVAASATEGLFVLEMGSASSAAADSIPAAPEAKQ*
Ga0120118_106182513300012010PermafrostDDLASVRNAVVVSTAKGTLFLSRDGGKTWGHMDGPNAEGTLSALRSRDAGNQLIAASATEGLFVIEMGSASSASADSIPASPAGKQ*
Ga0137389_1133563013300012096Vadose Zone SoilGALFLSRDGGKTWGHMDGPSAEGALSALRSREAGNQLVAASATEGLFVLEMGSASSAAADSIPASPEAKQ*
Ga0137376_1144131713300012208Vadose Zone SoilTVVLASDRGVFISRDAGGSWRQANLSELSLEDMASVKSAIVVSTAKGVLFVSRDSGKTWGHLEGPSGDNSLSALRSRESGNQLVAASATEGLFVLDMGSASSASVDPVGTLQAPKP*
Ga0137378_1132176623300012210Vadose Zone SoilVLASDRGVFTSRDAGESWRQANLSELSIDDMASVKSAIVVSTTRGALFLSRDAGKTWGHLEGPNGDSSFSALRSRESGNQLVAASATEGLFVLDMGSASSASADPVGTPLAPMQ*
Ga0137384_1049312423300012357Vadose Zone SoilMDEKTVVLASDHGVFVSRDTGESWHQANLSELSIDDLAPVRNAIVVSTAKGTLFLSRDGGKSWGHMDSPVADGALSALRSREAGNQLVAASSTEGLFVLEMGSASSASADAVPASPAAKQ
Ga0137390_1003499463300012363Vadose Zone SoilEKTVVLASDHGVFVSRDTGESWHQANLSELSIDDLAPVRNAIVVSTAKGTLFLSRDGGKSWGHMDSPVADGALSALRSREAGNQLVAASSTEGLFVLEMGSASSASADAVPASPAAKQ*
Ga0137398_1009975113300012683Vadose Zone SoilPFEPRGPLHLHPTDEKTVVLASDHGVFVSRDTGESWHQANLSELSIDDLAPVRNAIVVSTAKGTLFLSRDGGKSWGHMDSPVADGALSALRSREAGNQLVAASSTEGLFVLEMGSASSASADAVPASPAAKQ*
Ga0137359_1085864813300012923Vadose Zone SoilGGLHFYTSGEATVVLASDRGVFISRDAGGSWRQANLSELSLEDMASVKSAIVVSTAKGVLFVSRDSGKTWGHLEGPSGDNSLSALRSRESGNQLVAASATEGLFVLDMGSASSASVDPVGTLQAPKP*
Ga0137413_1022706713300012924Vadose Zone SoilDAGGSWRQANLSELSLEDMASVKTAIVVSTAKGVLFVSRDAGKTWGHLEGPSGDSSLSALRSRESGNQLVAVSATEGLFVLDMGSASSASVDPVGTLQAPKP*
Ga0137419_1079144623300012925Vadose Zone SoilSLEDMASVKSAIVVSTAKGVLFVSRDSGKTWGHLEGPSGDSSLSALRSRESGNQLVAASATEGLFVLDMGSASSASVDPVGTLQAPKP*
Ga0153915_1185113313300012931Freshwater WetlandsDESTIVLASDHGVFISRDAGESWRQANLSELLIEDMAPVKNAIVVSTAKGALFLSRDGGRTWGHMDGPSADNALSALRSRDTGNQLVAASATEGLFILDMGSASSASTDTVGTLPGAKQ*
Ga0137410_1016359023300012944Vadose Zone SoilLSELAVDDMASVKSAIVVSTAKGALFVSRDAGKTWGHLEGPSGDSSLSALRSRESGNQLVAASATEGVFVLDMGSASSASADSVETPLAPKQ*
Ga0137410_1052977623300012944Vadose Zone SoilEATVVLASDRGVFISRDAGGSWRQANLSELSLEDMASVKSAIVVSTARGVLFVSRDSGKTWGHLEGPSGDNSLSALRSRESGNQLVAASATEGLFVLDMGSASSASVDPVGTLQEPKP*
Ga0181538_1018180713300014162BogQSWRQANLSELLIDDLTPLRNALVVSTANGALFLSNDVGKTWRQMDSPAAEGAVSALRSREPGNQLVAATATEGLFVLEMGSASSASADSIADSPAPKQ*
Ga0181523_1073019113300014165BogTPIKSAIVVSTAKGALFLSRDAGKTWGRLSGPSADSSISALRSRDTANQLVAASATEGLFVLDMGSASSASVDPEAISPAPRQ*
Ga0137420_103210423300015054Vadose Zone SoilLSELSLEDMASVKSAIVVSTAKGVLFVSRDSGKTWGHLEGPSGDNSLSALRSRESGNQLVAASATEGLFVLDMGSASSASVDPVGTLQAPKP*
Ga0137420_103210513300015054Vadose Zone SoilLSLEDMASVKSAIVVSTAKGVLFVSRDSGKTWGHLEGPSGDNSLSALRSRESGNQLVAASATEGLFILDMGSASSASVDPVGTLQAPKP*
Ga0187824_1019904313300017927Freshwater SedimentVVLAGDHGVFIFRDAGESWRQASLSELSIDDLASVRDAVVVSTEKGTLFLSRDGGKTWGHLDGPNVDSTLSALRSREAGSQLVAASATEGLFVLEMGSASSASVDSIPASPSAQQ
Ga0187824_1033039413300017927Freshwater SedimentASNDGVFVSRDAGASWRQASLSELSMDDMASVRNAVVVAAADGKLFLSRDGGKSWGRMEGPNAEGELSALRSRDAGNQLVAASATEGLYVLDMNSASSASADSVPGSPADQQ
Ga0187806_121342713300017928Freshwater SedimentRQASLSELSIDDLASVRDAIVVSTEKGTLFLSRDGGKTWGHLDGPNVDSTLSALRSRDAGGQLVAASATEGLFVLDMGSASSASADSIPASPSAQQ
Ga0187825_1008142623300017930Freshwater SedimentENTVVLASNHGVFVSRDTGESWHQANLSELSIEDLAAVRNAVVVSTEQGTLFLSQDGGKTWGHMNGPNAEGSLSALRSREAGNQLVAASATEGLYVLEMGSASSASADPVPASPGAQH
Ga0187801_1001906733300017933Freshwater SedimentSIDDLASVRGAVVVSTEQGTLFLSRDGGKTWGHLDGPNVDSTLSALRSREAGGQLVAASATEGLFVLEMGSASSASADSTPASPSAQQ
Ga0187823_1038338813300017993Freshwater SedimentLLIDDMAPVRNGVIVSSANGRLFLSRDDGNTWGRMEGPGADSTLSALRSREAGNQLVAASATEGLFVLDMGSASSASADMNSATAAPQK
Ga0187804_1002441213300018006Freshwater SedimentAVVLASDHGVFISRDAGESWRQASLSELSIDDLASVRDAIVVSTEKGTLFLSRDGGKTWGHLDGPNVDSTLSALRSRDAGGQLVAASATEGLFVLDMGSASSASADSIPASPSAQQ
Ga0179592_1027281013300020199Vadose Zone SoilASDRGVFISRDAGGSWRQANLSELSLEDMASVKSAIVVSTAKGVLFVSRDSGKTWGHLEGPSGDNSLSALRSRESGNQLVAASATEGLFVLDMGSASSASVDPVGTLQAPKP
Ga0210403_1108394613300020580SoilLLASDHVVFVTRDAGASWHQANLSELSIDDMAPVRNAIIVSSANGRLFLSRDDGKTWGRMDGPNADSTLSALRSREAGNQLVAASATEGLFVLDMGSASSASADMNPATAAPQK
Ga0210395_1080932913300020582SoilVRNGVVVSTAKGSLFLSRDGGKTWGPMNGPDAEGSLSALRSREVGNQLVAASATEGLFVLEMGAASSASADSIPASPTAQQ
Ga0179596_1059220123300021086Vadose Zone SoilNLSELSMDDMASVKSAIVVSTTRGALFLSRDAGKTWGHLEGPNGDSSFSALRSRESGNQLVAASATEGLFVLDMGSASSASADPVGTPLAPTQ
Ga0210404_1084588623300021088SoilQANLSELSIDDMAPVRNAIIVSSVNGRLFLSRDDGKTWGRMDGPNADSTLSALRSRETGNQLVAASATEGLFVLDMGSASSASADMNPATAAPQK
Ga0210400_1025988923300021170SoilNVVLTSDRGVFISRDAGDSWRQANLSELSMDDMATVKSAIVVSTAKGALFLSRDAGKTWAHLDGPGGDSSLSALRSRDSNNQLVAASATEGLYVLDMGSASSASADPVETPLAPKH
Ga0210405_1053252713300021171SoilTAKGTLFLSRDNGKTWGNMTGPTSESTLSALRSRETGNQLVVASATEGLFVLDMGSASSASADSVPTSPAGKR
Ga0210408_1113219013300021178SoilGKTWISRALPFEPRGQVHFEPMDGSTVVLASDHGVYLSRDAGESWRQANLNEMLIDDLAPVRSALVASTAKGSLFLSRDGGKSWGTLNGPSSEGALSALRSREAGNQLVVAAGTEGLFVLDMGSASSASADPIADSPAPRH
Ga0210389_1067851613300021404SoilSELSIDDMAPVKNAVVVSTARGDLFLSRDAGKTWGRMDGPSADNSISALRSREAGNQLVAASATEGLYVMEMGTASSASANANSAEPGGQK
Ga0210386_1111421923300021406SoilTKLSELAIDDLASVRNAVVVATAKGELFLSRDGAKTWGPMDGPNAEGGTLSALRSREAGNQLVAASSTEGLFVLDMGAASSASADSMASPAAQH
Ga0210383_1146168623300021407SoilTDENTVVLASDHGVFVSRDTGESWHQANLSELSIEDLAAVRNAVVVSTEQGTLFLSRDGGKTWGHMDGPNAEGAISALRSREAGNQLVAASATEGLYVLEMGSASSASTDPVTASPAAQH
Ga0210391_1128228013300021433SoilHGVFVTRDAGASWHQANLSELSIDDMAPVRNAIIVSSANGRLFLSRDDGKTWGRMDGPNADSTLSALRSRETGNQLVAASATEGLFVLDMGSASSASADMNPATAAPQK
Ga0210409_1103456313300021559SoilVVSTGQGTLFLSRDGGKTWGHMDGPNAEGAISALRSREAGNQLVAASATEGLYVLEMGSASSASTDPVTASPAAQH
Ga0242666_111251233300022721SoilGESWHQASLSELSIDDLAPVRNGVVVSTAKGSLFLSRDGGKTWGPMNGPDAEGSLSAFRSREVGNQLVAASATEGLFVLEMGAASSASADSIPASPTAQQ
Ga0242657_115037013300022722SoilESWHQANLSELSIEDLAAVRNAVVVSTGQGTLFLSRDGGKTWGHMDGPNAEGAISALRSREAGNQLVAASATEGLYVLEMGSASSASTDPVTASPAAQH
Ga0224563_101065823300022731SoilESWHQANLSELSIDDLAPVRNAVVVSTAKGTLFVSRDGGKTWGHMDGPTRDDSTLSALRSREAGNQLVAASATEGLFVLEMGSASSASADSIPASPAAKQ
Ga0228598_104714013300024227RhizosphereLHPTDDNTVVLASDHGVFVSRDTGESWHQANLSELSIDDLAPVRNAVVVSTAKGTLFVSRDGGKTWGHMDGPTRDDSTLSALRSREAGNQLVAASATEGLFVLEMGSASSASADSIPASPAAKQ
Ga0207663_1127581013300025916Corn, Switchgrass And Miscanthus RhizosphereLYLSRDGAKSWVRLEGPNAEGALSALRSREAGNQLIAASATEGLFVLDIGSASLTSADSMPASQTANH
Ga0207687_1062000723300025927Miscanthus RhizosphereVRNALVVSTEKGILYVSRDGAKSWVRLEGPNADGALSALRSREAGNQLVAASATEGLFVLEIGSASLASADSMPASQTASH
Ga0209131_116977423300026320Grasslands SoilANLSELSLEDMASVKSAIVVSTARGVLFVSRDSGKTWGHLEGPSGDNSLSALRSRESGNQLVAASATEGLFVLDMGSASSASVDPVGTLQAPKP
Ga0257151_102330513300026341SoilSRDAGGSWRQANLSELSLEDMASVKSAIVVSTAKGVLFVSRDSGKTWGHLEGPSGDNSLSALRSRESGNQLVAASATEGLFVLDMGSASSASVDPVGTLQAPKP
Ga0257167_103211413300026376SoilFISRDAGGSWRQANLSELSLEDMASVKSAIVVSTAKGVLFVSRDSGKTWGHLEGPSGDNSLSALRSRESGNQLVAASATEGLFVLDMGSASSASVDPVGTLQAPKP
Ga0179587_1038126223300026557Vadose Zone SoilLDDLAPVRNGVVVSTGSGTLFLSRDGGRSWGKMDRPAVDSTLSALRSRQAGSQLVAASSTEGLFILDMGSASSASADPVDASPTGKQ
Ga0209731_106242713300027326Forest SoilNSVVVSTAKGTLFLSRDAGKTWAAMGSPGGDSSLSALRSRDEGNQLVAASATEGLFVLDMGSTSSAAADEAPDSESPAALH
Ga0208044_102431113300027625Peatlands SoilGVFVSRDTGESWHQANLSELSIDDLAAVRNAVVVSTEQGTLFLSRDGGKTWGHMDGPNAEGTLSALRSREARNQLVAASATEGLYVLEMGSASSASADPEPASPAAQH
Ga0209217_117573913300027651Forest SoilHFHTADESTVVLASDHGVFISHDAGESWRQANLSELSMDDMASVKSAIVVSTTKGALFLSRDAGKTWGHLEGPNGDSTLSALRSCESGNQLVAATATEGLFVLDMGSTSSALADSMDLPLRPKH
Ga0209388_115369013300027655Vadose Zone SoilVVSTAKGVLFVSRDSGKTWGHLEGPSGDNSLSALRSRESGNQLVAASATEGLFVLDMGSASSASVDPVGTLQAPKP
Ga0209118_110336313300027674Forest SoilLSIDDLAAVRNAVVVSTAKGTLFLSRDGGKTWGHMDGPNAEGALSALRSREAGNQLVAASATEGLFVLEMGSASSASADPVSTSPAAQH
Ga0209283_1065989013300027875Vadose Zone SoilSAIVVSTATGALFVSRDAGKTWGPMEGPNGDNSLSALRSRESGNQLVAASATEGLFEMDMGSASSASAGPVETPLAPKQ
Ga0209275_1018290833300027884SoilMSRTLPFEPRGQLHLHPQDEKTVVLASDHGVFVSRDTGESWHQASLSELSIDDLAPVRNGVVVSTAKGSLFLSRDGGKTWGPMNGPDAEGSLSALRSREVGNQLVAASATEGLFVLEMGAASSASADSIPASPTAQQ
Ga0209068_1043462713300027894WatershedsPFQPRGSLHLHPTDENTVVLASDHGVFVSRDAGESWNQANISELAIDDLAPVRNNVVVSTAAGELFLSRDSGKTWGHMDGPNTDGPLSALRSRESGNQLVAASATEGLYVLEMGNAASASTDANSDSPAVNK
Ga0209488_1002892913300027903Vadose Zone SoilTLPVGPRGALHFQAADETTVVLASDRGVFTSRDAGESWRQANLSELSMDDIASVKSAIVVSTTRGALFLSPDAGKTWGHLEGPNGDSSFSALRSRESGNQLVAASATEGLFVLDMGSASSASADPVGTPLAPTQ
Ga0209006_1037010613300027908Forest SoilGTLFLSRDAGKSWAQLDGPSAEGTISALRSRDAGNQLIAASSTEGLFVLEMGSASSTSADPVRASLPAKQ
Ga0209698_1030136323300027911WatershedsSGQLFLSRDSGKTWGHMDGPNAEGSISALRSREAGNQLVAASATEGLYVLEMGSATATSAGDNGAASGTVTVNSKTPYGTPCVY
Ga0209698_1059965213300027911WatershedsLIDDIAPVRNAVVVSTAKGTLFLSRDAGKTWGHMTGPTADSALSALRSREAGNQLVAASATEGLFVLDMASASSASADSIPASPAGQQ
Ga0209698_1065496813300027911WatershedsLTPVRNAVIVSTAKGTLFLSRDGGKTWGNMAGPTSESTISALRSREAGNQLVAASATEGLFVLDMGSASSASADSVPASPAAKQ
Ga0311338_1172817613300030007PalsaWHQASLTELSIDDLAPVRDAIVVSTANGSLFLSRDGGKIWAHLDGPRAEGSLSALRSRDAGNQLIAASATEGLFVLDMGSASSASSDSTTTLPEAWK
Ga0075394_1119995813300030969SoilNLSELSIDDLASVRNAVVVSSAKGTLFLSRDGGKTWGHMDGPNAEGTLSALRSREAGNQLVAASATEGLFLLEMGSASSASADSTITSPAAKQ
Ga0170834_10497147913300031057Forest SoilVFVSRDTGESWQQANLSELSIDDLASVRNAVVVSSAKGALFLSRDGGKTWGHMDGPNAEGTLSALRSREAGNQLVAASATEGLFLLEMGSASSASADSTITSPAAKQ
Ga0170824_11822062013300031231Forest SoilDEKTVVLASDHGVFVSRDTGESWQQANLSELSIDDLASVRNAVVVSSAKGALFLSRDGGKTWGHMDGPNAEGTLSALRSREAGNQLVAASATEGLFLLEMGSASSASADSTITSPAAKQ
Ga0302325_1307380713300031234PalsaKTWIARTLPFEPHGSMHIQPADESTVVLAGDHGVFLSRDAGESWRQANLSELLIDDLAPVRSAMVVSTLNGTLFVSRDGGKSWVHLEGPGSDSTLSALRSREAGNQLVAASATEGLFILDMGSASSASVDPAADSSAPRQ
Ga0310686_11306077723300031708SoilHIRTADQSTVVLASDRGVFVSRDAGESWRQANLSELYADDMTSVKSAIVVSTANGALFVSRDAGKTWGQLEGPSGDNSLSALRSGESRNQLVAASATEGLFVLDMGPATSASADSVETPLAPKQ
Ga0265342_1019943013300031712RhizosphereESWHQANLSELSIEEMAPLKNAVAVSTAKGEVFLSRDGGKSWGRVDSPGAQENLSALRSREAGNQLVAATATEGLFVLEVGPASSASIGTNEDMAAPRR
Ga0307475_1112197113300031754Hardwood Forest SoilYGVFISRDTGESWQQANLSELWIDDLAFIRNTVVVSTSKGTLFFSRDSGKTWEHLDGPKAEGALSALRSREMGNQLVAASSTEGLFVLEMGPAASASADSAPASAAVKQSLH
Ga0307479_1170082913300031962Hardwood Forest SoilTVVVSTSKGTLFFSRDSGKTWEHLDGPKAEGALSALRSREMGNQLVAASSTEGLFVLEMGPAASASADSAPASAAVKQSLH
Ga0307470_1005361713300032174Hardwood Forest SoilWKQANLSELSIDDMVPVKNAVVVSTARGDLFLSRDAGKTWGHMEGPSADNSISALRSREAGNQLVAASATEGLYVMEMGSASSASADANSALPVGQK
Ga0307471_10424303723300032180Hardwood Forest SoilVVVSTTKGTLFLSRDGGKTWGHLDGPNAEGALSALRSREAGNQLVAASATEGLFVLEMGSASSASTNSTPASPAARQ
Ga0348332_1144947313300032515Plant LitterSIDDLASVHGAVVVSTEKGSLFLSRDAGKTWGHLDSPNAENTLSALRSLEAGNQLVVASSTEGLFVLDMGAGSSASADPVEGPSVPRR
Ga0334790_159585_456_6713300033887SoilSGALFLSNDVGKTWRHMDSPGAEGAVSALRSREAGNQLFAATATEGLFVQDMGSASSASADSIADSPAPKQ


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.