Metagenome / Metatranscriptome Family F105800

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F105800
Family Type	Metagenome / Metatranscriptome
Number of Sequences	100
Average Sequence Length	89 residues
Representative Sequence	MTDPDPDLDPDPVEQANVAAAAIAGFTLAQFAFGELIKNGILPRGHAEQLLRQAIETHATAGPGNRGAAELLAVVLQSLSAIEPPTRQ
Number of Associated Samples	53
Number of Associated Scaffolds	100

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	0.00 %
% of genes from short scaffolds (< 2000 bps)	0.00 %
Associated GOLD sequencing projects	42
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.61

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (100.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (52.000 % of family members)
Environment Ontology (ENVO)	Unclassified (65.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (80.000 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118.120.122.124.126.128.130.132.134.136.138.140.142.144.146.148.150.152.154.156.158.160.162.164 1Ga0066388_1008106743 2Ga0066388_1026066752 3Ga0066903_1030132241 4Ga0066903_1037652741 5Ga0066903_1054148011 6Ga0066903_1067908972 7Ga0066903_1083841481 8Ga0070717_104923412 9Ga0075018_105176772 10Ga0070712_1010243941 11Ga0126374_115936441 12Ga0126374_119065302 13Ga0126380_109498271 14Ga0126380_110298291 15Ga0126380_113727961 16Ga0126373_120297262 17Ga0126377_124409011 18Ga0126379_121280071 19Ga0126379_134408922 20Ga0126383_132824992 21Ga0164303_112573771 22Ga0126369_112682212 23Ga0126369_134137272 24Ga0182036_102023741 25Ga0182036_103741302 26Ga0182036_105492951 27Ga0182036_111392081 28Ga0182036_112002981 29Ga0182041_104606162 30Ga0182041_105819632 31Ga0182041_118907401 32Ga0182041_120767342 33Ga0182033_111976743 34Ga0182033_121015731 35Ga0182035_102588562 36Ga0182035_103245462 37Ga0182032_104522491 38Ga0182032_109420452 39Ga0182032_117855791 40Ga0182032_118152401 41Ga0182034_101379152 42Ga0182040_110471512 43Ga0182040_112689181 44Ga0182037_102110222 45Ga0182037_104829991 46Ga0182037_106203891 47Ga0182037_107957242 48Ga0182039_120263251 49Ga0182038_110187631 50Ga0210408_112620421 51Ga0210402_101420054 52Ga0210402_105536962 53Ga0126371_126264192 54Ga0126371_139080751 55Ga0242658_10983581 56Ga0242662_101070851 57Ga0207693_104975242 58Ga0209526_109258462 59Ga0170820_123846652 60Ga0318538_106698481 61Ga0310915_105458892 62Ga0306917_104585972 63Ga0306917_107711241 64Ga0306918_109325622 65Ga0306918_112398511 66Ga0318546_109983631 67Ga0318548_104128471 68Ga0318497_108738531 69Ga0310917_111981731 70Ga0306919_108075651 71Ga0306919_108796811 72Ga0306925_107928951 73Ga0306925_109630722 74Ga0306925_114842021 75Ga0318520_109543431 76Ga0306923_107966852 77Ga0306923_122603841 78Ga0306923_123067522 79Ga0306921_104158203 80Ga0306921_107752501 81Ga0306921_112737732 82Ga0306921_116983962 83Ga0306921_127909141 84Ga0310916_105955481 85Ga0310916_109309291 86Ga0310916_114870311 87Ga0310909_106836121 88Ga0310909_109240452 89Ga0306926_114538992 90Ga0306922_107191722 91Ga0318533_110107641 92Ga0306924_112960272 93Ga0306920_1007393652 94Ga0306920_1016386831 95Ga0306920_1017419531 96Ga0306920_1019457101 97Ga0306920_1020978511 98Ga0306920_1024349421 99Ga0335079_104140272 100Ga0335081_102351912
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118.120.122.124.126.128.130.132.134.136.138.140.142.144.146.148.150.152.154.156.158.160.162.164 1Ga0066388_1008106743 2Ga0126374_115936441 3Ga0126374_119065302 4Ga0126377_124409011 5Ga0126383_132824992 6Ga0164303_112573771 7Ga0182036_111392081 8Ga0182041_118907401 9Ga0182035_102588562 10Ga0182040_110471512 11Ga0182037_106203891 12Ga0209526_109258462 13Ga0318548_104128471 14Ga0306921_104158203
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88 1Ga0066388_1008106743 2Ga0126374_115936441 3Ga0126374_119065302 4Ga0126380_113727961 5Ga0126383_132824992 6Ga0182041_120767342 7Ga0182035_102588562 8Ga0182032_118152401 9Ga0182037_106203891 10Ga0182038_110187631 11Ga0210408_112620421 12Ga0126371_139080751 13Ga0242658_10983581 14Ga0318520_109543431 15Ga0306921_104158203 16Ga0306926_114538992 17Ga0306920_1020978511 18Ga0335081_102351912
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 51.72% β-sheet: 0.00% Coil/Unstructured: 48.28%
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Predicted 3D Structure

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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.61
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.61
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 100 Family Scaffolds
PF03401	TctC	1.00
PF13180	PDZ_2	1.00
PF02550	AcetylCoA_hydro	1.00
PF06577	EipA	1.00
PF03703	bPH_2	1.00
PF02743	dCache_1	1.00
PF03050	DDE_Tnp_IS66	1.00
PF02082	Rrf2	1.00

Showing 1 to 8 of 8 entries

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COG ID	Name	Functional Category	% Frequency in 100 Family Scaffolds
COG0427	Propionyl CoA:succinate CoA transferase	Energy production and conversion [C]	1.00
COG0640	DNA-binding transcriptional regulator, ArsR family	Transcription [K]	1.00
COG1414	DNA-binding transcriptional regulator, IclR family	Transcription [K]	1.00
COG1725	DNA-binding transcriptional regulator YhcF, GntR family	Transcription [K]	1.00
COG1959	DNA-binding transcriptional regulator, IscR family	Transcription [K]	1.00
COG2186	DNA-binding transcriptional regulator, FadR family	Transcription [K]	1.00
COG2188	DNA-binding transcriptional regulator, GntR family	Transcription [K]	1.00
COG2378	Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains	Transcription [K]	1.00
COG2524	Predicted transcriptional regulator, contains C-terminal CBS domains	Transcription [K]	1.00
COG2972	Sensor histidine kinase YesM	Signal transduction mechanisms [T]	1.00

Phylogeny

NCBI Taxonomy

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	100.00 %

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
No data available in table

Environmental Properties

Associated Habitat Types

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Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	1.00%
Terrestrial	Environmental → Terrestrial	99.00%

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Sediment	1.00%
Soil	Environmental → Terrestrial → Soil	99.00%

Habitat	Taxonomy	Distribution
Loam	Environmental → Terrestrial → Soil → Loam	11.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	86.00%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.00%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.00%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.00%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	71.00%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	15.00%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.00%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.00%

Habitat	Taxonomy	Distribution
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.00%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.00%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	52.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	18.00%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.00%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	14.00%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	7.00%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.00%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M

Showing 1 to 10 of 53 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066388_1008106743	3300005332	Tropical Forest Soil	MTDPDPDLDPDPVEQANVAAAAIAGFTLAQFAFGELIKNGILPRGHAEQLLRQAIETHATAGPGNRGAAELLAVVLQSLSAIEPPTRQ*
Ga0066388_1026066752	3300005332	Tropical Forest Soil	MTDPNPDLDPDEVEQANVAAAAIAGFTLAQFAFGELIKSGLLPKDHAELLLRQAIETHATAGPGNRGAAELLAVVLESLSAIQPPTRQ*
Ga0066903_1030132241	3300005764	Tropical Forest Soil	MTDPNPNLDPDEVDEVEQANVAAAAIAGFTLAQLAFGELIRNGILPKDHAEHLLRHAIETHATAGPGNRGAAELLAAVLQGLSAIQPPTRQ*
Ga0066903_1037652741	3300005764	Tropical Forest Soil	MTDPDPDPDLDPVEQANVAAAAIAGFTLAQFAFGELIKNGILPRGHAEQLLRKAIETHATAGPGNRGAAELLAVVLQSLSEIEPPTRQ*
Ga0066903_1054148011	3300005764	Tropical Forest Soil	MTDPNLNLDPDEVEQANVAAAAVAGFTLAQFAFGELIKNGILPKADAEHLLRQAIETHATAGPGNRGAAELLGVVLQGLSAIQPPTRQ*
Ga0066903_1067908972	3300005764	Tropical Forest Soil	PFMTDPNPDLDPDEVEQANVAAAAIAGFTLAQFAFGELIKSGILAKGDAEHLLRQAIETHETAGPGNRGAAELLAVVLQSLSAIQPPTRQ*
Ga0066903_1083841481	3300005764	Tropical Forest Soil	MTDPDPDPVEQANVAAAAIAGFTLAQFAFGELVKNGILPRGHAEQLLRQAIETHAAAGPGNRGAAELLAVVLQSLSAIESPTRQ*
Ga0070717_104923412	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MTDPNPNLDPDQVDEGEQASIAAAAIAGFTLAQFAFGELIKNGILPKDHAEHLLRQAIETHATVAGPGNRGAAELLAVVLQGLSAIQPPTRQ*
Ga0075018_105176772	3300006172	Watersheds	MTDPNRDLDPDEVEQANVAAAAIAGFTLAQFAFGELIKSGILAKGDAEHLLRQAIETHETAGPGNRGAAELLAVVLQSLSAIQPPTRQ*
Ga0070712_1010243941	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MTDPNPNLDPDQVDEGEQASIAAAAIAGFTLAQFAFGELIKNGILPKDHAEHLLRQAIETHATVAGPGNRGAAELLAVVLQGLSEIQPPTRQ*
Ga0126374_115936441	3300009792	Tropical Forest Soil	VFWSGPLWNKIAAQRGTFMTDPEPDPDPVEQANVAAAAIAGFTLAQFAFGELIKNGLLARGDAEQLLRQAIEAHASAGPGDRDAAKLLTVVLQSLSALQPPTRQ*
Ga0126374_119065302	3300009792	Tropical Forest Soil	MTDPDLDPDPDPVEQANIAAAAIAGFTLAQFAFGELIKNGIVPRGDAEQLLRQALEAHATAGPGNQAAAKLLTVVLQSLYACSRQLGNRAGRPLRRQA*
Ga0126380_109498271	3300010043	Tropical Forest Soil	MTDPNPNLDPDEVDEGEQASVAAAAIAGFTLAQFAFGELIKNGILPKGDAEHLLRQAIETHATAGPGNRGAAELLAVVLQSLSAIQSPTRQ*
Ga0126380_110298291	3300010043	Tropical Forest Soil	MTDLPPNPDELDEGEQANVAAAAIAGFTLAQFAFGELIKNGILPKDHAEHLLRHAIETHATAGPGNRGAAELLAVVLQGLSEIQPPTRQ*
Ga0126380_113727961	3300010043	Tropical Forest Soil	VVWSGQLWNKLATQRGTFMTDPDLDPDPDPVEQANIAAAAIAGFTLAQFAFGELIKNGILARGDAEQLLRRAIDANATGGPGNRGAAELLTVVLQSLYALQSPTRQ*
Ga0126373_120297262	3300010048	Tropical Forest Soil	MTDPDPDLDPDEVEQANVAAAAIAGFTLAQFAFGELIKNGILPRGHAQQLLTHAIETHATAGPGNRAAAELLAVVLQSLSAIEPPTRQ*
Ga0126377_124409011	3300010362	Tropical Forest Soil	MTNPEPDTDPVEQANIAAAAIAGFTLAQFAFGELIKNGILARGDAEQLLRRAIDANATGGPGNRGAAELLTVVLQSL
Ga0126379_121280071	3300010366	Tropical Forest Soil	MTDPNPNLDPDQVDEGEQASVAAAAIASFTLAQFAFGELIKNGILPKSHAEHLLRQAIETHATVAGPGNRGAAELLAVVLQGLSAIQPPTRQ*
Ga0126379_134408922	3300010366	Tropical Forest Soil	MTDPCPDPDAVEQANVAAAAIAGFTLAQFAFGELIKNGILPRGHAEQLLRQAIETHATAGPGNRGAAELLAVVLQSISAIEPPTRQ*
Ga0126383_132824992	3300010398	Tropical Forest Soil	PANPTVALARIEPRAFMTDPDPDPDAVEEANVAAAAIAGFTLAQFALGELIKNGIPPKGHAEHLLKHAIETHATAGPGNRAAAELLAVVLQSLAAIESPTRQ*
Ga0164303_112573771	3300012957	Soil	MTDPNPNLDPDQVDEGEQASIAAAAIAGFTLAQFAFGELIKNGILPKGDAEHLLRQAIDTHAAAGPGNRGAAE
Ga0126369_112682212	3300012971	Tropical Forest Soil	MTDPNPNLDPDEVDEVEQANVAAAAIAGFTLAQLAFGELIRNGILPKDHAEHLLRRAIETHATAGPGNRGAAELLAAVLQGLSAIQPPTRQ*
Ga0126369_134137272	3300012971	Tropical Forest Soil	PCFRKGYLANPTVPLAPYRAVHIESRAFMTDPDPNLDPDAVEQANVAAAAIAGFTLAQFAFAELIKNGILPRGHAEQLLTHAIETHATAGPGNRAAAELLAVFLQSLSAIESPTRQ*
Ga0182036_102023741	3300016270	Soil	MTDPDLDLDPVEQANVAAAAIAGFTLAQFAFGELIKNGILPRGHAEQLLRKAIETHAAAGPGNRGAAELLAVVLQSLSAIEPPTRQ
Ga0182036_103741302	3300016270	Soil	DPDLVSDPDPVEQANIAAAAIAGFTLAQFAFGELIKNGILPRGDAEQLLRQAIEAHATAGPGNRAAAKLLAVVLQSLSEFQSPTRQ
Ga0182036_105492951	3300016270	Soil	MTDPKPNLDPDEVDEVEQANVAAAAITGFTLAQLAFGELIRNGILPKDHAEHLLRLAIETHATAGPGNRGAAELLA
Ga0182036_111392081	3300016270	Soil	MTEWSSPLAATVRSLYLREIGSGPSRVPFMTDPNPNLDPDEVEQANVAAAAIAGFTLAQFAFGELIRNGILPKDHAEHVLRHAIETHATGGPGNRGAAELLAVVLQGLSAVQPPTRASA
Ga0182036_112002981	3300016270	Soil	MTDPDPDPDAVEEANVAAAAIAGFTLAQFAFGELIKNGLLPRDHAEYLLKHAIEIHATAGPGNRAAAELLAVVLQSLAAIESPTRQ
Ga0182041_104606162	3300016294	Soil	MTDPNPNLDPDEVDEGEQASVAAAAIAGFTLAQFGFGELIKNGILPKDHAEHLLRHAIETHATAGPGNRGAAELLAVVLQSLSAIQPPTRQ
Ga0182041_105819632	3300016294	Soil	MTDPNPNLDPDEVDEGEQSNVAAAAIAGFTLAQFAFGELIRNGILPKDHAEHLLRLAIETHATAGPGNRGAAELLAVVLQGLSEIRPPTRQ
Ga0182041_118907401	3300016294	Soil	NIAAAAIAGFTLAQFAFGELIKNGILPRGDAEQLLRQAIEAHATAGPGNRAAAKLLAVVLQSLSEFQSPTRQ
Ga0182041_120767342	3300016294	Soil	MTNPDLDPDEVEQANVAAAAIAGFTLAQFAFGELIKNGILPKGQAEQLLKHAIETHAIAGPGNRAAAELLAVVFQSLSTIESPTRQ
Ga0182033_111976743	3300016319	Soil	PDAVEQANVAAAAIAGFTLAQFAFAELIKNGILPRGHAQQLLTHAIETHATAGPGNRAAAELLAVVLQSLSAIESPTRQ
Ga0182033_121015731	3300016319	Soil	MTDLNSNLDPDEVEPANVAAAAIAGFTLAQFAFGELIKSGILPKDHAEHLLREAIETHATAGPGNRGAAELLAVVLQSLSAIQPPTRQ
Ga0182035_102588562	3300016341	Soil	AATVRSLFVRSRQWSPVEVFMTDLIPNPDEVDEGEQANVAAAAIAGFTLAQFAFGELIKNGILPKGDAEHLLRQAIETHATAGPGNRGAAELLGVVLQGLSAIQPPTRQ
Ga0182035_103245462	3300016341	Soil	MTDPDPHLDPDPVEQANVAAAAIAGFTLAQFAFGELIKNGILPRGHAERLLRQAIETHATAGPGNRGAAELLAVVLQSLSAIEPPTRQ
Ga0182032_104522491	3300016357	Soil	MTDPNPNLDPDEVEQANVAAAAVAGFTLAQFAFGELIKNGILPKADAEHLLRQAIETHATAGPGNRGAAELLAVVLQGLSAIQPPTRQ
Ga0182032_109420452	3300016357	Soil	MTDPDLDPDAVEEANVAAAAIAGFTLAQFAFGELIRNGILPRGHAEHLLKHAIETHATAGPGNRAAAELLAVVLQSLSAIESPTRQ
Ga0182032_117855791	3300016357	Soil	MTDPDPDLDPDPVEQANVAAAAIAGFTLAQFAFGELIKNGILPRDQAEQLLRRAIETHATSGPGNRGAAGLPAVVLQSISAIAPPTRQ
Ga0182032_118152401	3300016357	Soil	LATQRGTFMTDPDLDPDPDPVEQANIAAAAIAGFTLAQFAFGELIKNGILPRGDAEQLLRQAIEAHATAGPGNRAAAKLLAVVLQSLSEFQSPTRQ
Ga0182034_101379152	3300016371	Soil	MTDPDPDLDPDSVEQATVAAAAIAGFTLAQFAFGELIKNGILPRGHAEQLLRQAIETHATAGPGNRGAAELLAVVLQSLSAIEPPTRQ
Ga0182040_110471512	3300016387	Soil	MTDPDLDPDAVEEANVAAAAGHAEHLLKHAIETHATVGPGNRAAAELLAVVLQSLSAIESPTRQ
Ga0182040_112689181	3300016387	Soil	MTDPDPDLDPDPVEQANVGAAAIAGFTLAQFAFGELIKNGILPKGHAEQLLRQAIETHATAGPGNRAAAELLAVVLQSLSAIEPPTRQ
Ga0182037_102110222	3300016404	Soil	MTDPDLDLDPVEQANVAAAAIAGFTLAQFAFGELIKNGILPRDQAEQLLRRAIETHATAGPGNRGAAELLAVVLQSLSAIESPTRQ
Ga0182037_104829991	3300016404	Soil	MTDPKPNLDPDEVDESEQASVAAAAIAGFTLAQFAFGELIKNGILPKDHAEHLLRHAIETHATAGPGNRGAAELLAAVLQGLSSIQPPTRQ
Ga0182037_106203891	3300016404	Soil	MTDPNPNLDPDEVDEGEQASVAAAAIAGFTLAQFAFGALRQYAMLPKDQAEHFPRQAFEPQATPGPGNRGAAELLAAVLQSLSAVQPPTRQ
Ga0182037_107957242	3300016404	Soil	MTDPNLNLDPDEVEQANVAAAAVAGFTLAQFAFGELIKNGILPKADAEHLLRQAIETHATAGPGNRGAAELLGVVLQGLSAIQPPTRQ
Ga0182039_120263251	3300016422	Soil	MTDPNPNLDPDEVEQANVAAAAVAGFTLAQFAFGELIKNGILPKADAEHLLRQAIETHATAGPGNRGAAELLAVVLQSLSA
Ga0182038_110187631	3300016445	Soil	RAFMTDPDPDPDAVEEANVAAAAIAGFTLAQFAFGELIRNGLLPRGHAEHLLKHAMETHATAGPGNRAAVELLAVVLQSLSAIEPPTRQ
Ga0210408_112620421	3300021178	Soil	MTDPNPNLDPDEVDEGEQASVAAAAIAGFTLAQFAFGALIKNGILPKDHAEHLLRHAIETHATAGPGNRGAAELLAVVLQGLSAIQPPTRQ
Ga0210402_101420054	3300021478	Soil	MTDPNSDLDPDEVEQANVAAAAIAGFTLAQFAFGELIKNGILPKGDAEHLLRQAIDTHAAAGPGNRGAAELLAVVLQGLSAIQPPTRQ
Ga0210402_105536962	3300021478	Soil	MTDPNPDLDPDEVEQANVAAAAIACFTLAQFAFGELIKSGILARGDAEHLLKQAIETHETAGPGNRGAAELLAVVLQSLSAIQPPTRQ
Ga0126371_126264192	3300021560	Tropical Forest Soil	MTDPNPNLDPDEVDEVEQANVAAAAIFTLAQFAFGELIKNGILPKDHAEHLLRQAIETHATAGPGNRGAAELLAAVLQGLSAVQPPTRQ
Ga0126371_139080751	3300021560	Tropical Forest Soil	MTDPNPDLDPDEVEQANVAAAAIAVFTLAQFAFGELIKNGILPKGDAEHLLRQAIDMHAAAGPGNRGAAELLAVVLQGLSAIQAPTRQ
Ga0242658_10983581	3300022530	Soil	PFMTDPNPNLDPDEVDEVEQADVAAAAIAGFTLSQLAFGELIKRGLLPKDHAEHLLRLAIETHGTTGPGNRGAAELLAAVLQGLSAIQPPTRQ
Ga0242662_101070851	3300022533	Soil	MTDPNPDLDPDEGEQASVAAAAIAGFTLAQLAFGELIRNGILPKDHAEHLLRQAIETHATAGPGNRGAAELLAVVLQSLSAVQPPTRQ
Ga0207693_104975242	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MTDPNPNLDPDEGEQASVAAAAIAGFTLAQFAFGELIKNGILPKGDFLLRQAIETHAAVAGPGNRGAAELLTVVLQG
Ga0209526_109258462	3300028047	Forest Soil	TRRETIRQGAKNPRKSLWREIVSDASGGPFMTDPNPDLDSDEVEQANVAAAAIAGFTLAQFAFGELIKSGILARGDAEHLLRQANETHETAGPGNRGAAELLAVVLQSLSAIQPPTRQ
Ga0170820_123846652	3300031446	Forest Soil	MTDPNPDLDPDEVEQANVAAAAIAGFTLAQFAFGELIKSGILAKGDAEHLLRQAIETHETAGPGNRGAAELLAVVLQSLSAVQPPTRQ
Ga0318538_106698481	3300031546	Soil	GSGPSRVPFMTDPNPNLDPDEVDEVDEVEQANVAAAAIAGFTLAQFAFGELIKNGILPKADAEHLLRQAIETHATAGPGNRGAAELLGVVLQGLSAIQPPTRQ
Ga0310915_105458892	3300031573	Soil	MTDPDPDPDAVEEANVAAAAIAGFTLAQFAFGELIKNGLLPRDHAEYLLKHAIETHATVGPGNRAAAELLAVVLQSLSAIESPTRQ
Ga0306917_104585972	3300031719	Soil	MTDPNPNLDPDEVDEGEQASVAAAAIAGFTLAQFAFGELIKNGILPKDHAEHLLRHAIETHATAGPGNRGAAELLAVVLQGLSEIQPPTRQ
Ga0306917_107711241	3300031719	Soil	TDPNPDLDPDEVDEGEQASVAAAAIAGFTLAQFAFGELIKSGILAKGDAEHLPRQAIETHETAGPGNRGAAELLAVVLQSLSAIQPPTRQ
Ga0306918_109325622	3300031744	Soil	MTDPNPNLDPDEVDEGEQASVAAAAIAGFTLAQFAFGELIKNGILPKDHAEHLLRHAIETHATAGPGNRGAAELLAVVLQSLSAIQPPTRQ
Ga0306918_112398511	3300031744	Soil	AVEEANVAAAAIAGFTLAQFAFGELIKNGLLPRDHAEYLLKHAIETHATAGPGNRAAAELLAVVLQSLSAIESPTRQ
Ga0318546_109983631	3300031771	Soil	MTDPDPDLDPDPVEQANVAAAAIAGFTLAQFAFGELIKNGILPRGHAEQLLRQAIETHATAGPGNRGAAELLAVVLQSLSAIEPPTR
Ga0318548_104128471	3300031793	Soil	MPEWSSPLAATVRSLYLREIGSGLSRVPFMTDPNPNLDPDEVDEVEQANVAAAAIAGFTLAQLAFGELIRNGILPKDHAEHLLRRAIETHATAGPGNRGAAELLAVVLQGLSAVQPPTRQ
Ga0318497_108738531	3300031805	Soil	MTDPNPNLDPDEGEQANVAAAAIAGFTLAQFAFGELIKNGILPKGDAEHLLRQAIETHATVASPGNRGAAELLAVVLQGLSAIQPPTRQ
Ga0310917_111981731	3300031833	Soil	MTDPDPDPHLVSDPDPVEQANIAAAAIAGFTLAQFAFGELIKNGILPRGDAEQLLRQAIEAHATAGPGNRAAAKLLAVVLQSLSEFQSPTRQ
Ga0306919_108075651	3300031879	Soil	MTDPDPDLDPDPVEQANVAAAAIAGFTLAQFAFGELIKNGILPRGHAEQLLRQAIETHATAGPGNRGAAELLAVVLQSLSAIEPPTRQ
Ga0306919_108796811	3300031879	Soil	MTDPNPNLDPDEVDEVEQANVAAAAIAGFTLAQLAFGELIKNGILPKDHAEHLLRHAIETHATAGPGNRGAAELLAVVLQSLSAIQPPTRQ
Ga0306925_107928951	3300031890	Soil	MTDPNPNLDPDEVDEGEQASVAAAAIAGFTLAQFAFGELIKNGILPKDHAEHLLRHAIETHATAGPGNRGAAELL
Ga0306925_109630722	3300031890	Soil	MTDPNPNLDPDEVEQANVAAAAVAGFTLAQFAFGELIKNGILPKGDAEHLLRQAIETHATAGPGNRGAAELLGVVLQGLSAIQPPTRQ
Ga0306925_114842021	3300031890	Soil	MTDPDPDPDAVEEANVAAAAIAGFTLAQFALGELIKNGILPKGHAEHLLKHAIETHATAGPGNRAAAELLAVVLQSLSAIESPTRQ
Ga0318520_109543431	3300031897	Soil	NIAAAAIAGFTLAQFAFGELIKNGILPRGEAENLLRQAIEANATAGPGNRAAAELLAIVLQNISGFQPPTRQ
Ga0306923_107966852	3300031910	Soil	PNPDLDPDEVEQANVAAAAIAGFTLAQFAFGELIRSSILARGDAEHLLKQAIETHETAGPGNRGAAELLAVVLQSLSAIQPPIRQ
Ga0306923_122603841	3300031910	Soil	LPGSGERYGAGRRAVQIAKRQRRAFMTDPDPDLDPDPVEQANVAAAAIAGFTLAQFAFGELIKNGILPRGHAEQLLRQAIETHATAGPGNRGAAELLAVVLQSLSAIEPPTRQ
Ga0306923_123067522	3300031910	Soil	MTDPNPNLDPDEVDEGEQASVAAAAIAGFTLAQFAFGELIKNGILPKDHAEHLLRHAIETHATAGPGNRGAAELLAVVLQGLSAVQPPTRQ
Ga0306921_104158203	3300031912	Soil	MTDLPPNPDELDEGEQANDAAAAIAGFTLAQFAFGELIKNGILPKDHAEQMLRYAIETHATAGPGNRGAAEMVTVNASISFGFEPADDLGQLRAIG
Ga0306921_107752501	3300031912	Soil	MTDPNPNLDPDEVDEVEQANVAAAAIAGFTLAQLAFGELIRNGILPKDHAEHLLRRAIETHATAGPGNRGAAELLAAVLQGLSAIQPPTRQ
Ga0306921_112737732	3300031912	Soil	MTDPNPDLDPDEVEQANVAAAAIAGFTLAQFAFGELIRSSILARGDAEHLLKQAIETHETAGPGNRGAAELLAVVLQSLSAIQPPTRQ
Ga0306921_116983962	3300031912	Soil	MVPPPLAATVHLREIGSGPSRGPFMTDPNPNLDPDEVDEVEQANVAAAAIAGFTLAQFAFGELIRNGILPKDHAEHVLRHAIETHATGGPGNRGAAELLAVVLQGLSAVQPPTRQ
Ga0306921_127909141	3300031912	Soil	MTDPNPNLDPDQVDEGEQASVAAAAIAGFTLAQFAFGELIKNGILPKSHAEHLLRQAIETHATVAGPGNRGAAELLAVVLQGLSAIQPPTRQ
Ga0310916_105955481	3300031942	Soil	MTDPNPNLDPDEVDEVEQANVAAAAIAGFTLAQFAFGELIRNGILPKDHAEHLLRQAIETHATVGLGNRGAAELLAVVLQGLSSIQPPTRQ
Ga0310916_109309291	3300031942	Soil	MTDPDLDPDAVEEANVAAAAIAGFTLAQFALGELIKNGILPKGHAEHLLKHAIETHATAGPGNRAAAELLAVVLQSLSAIEPPTRQ
Ga0310916_114870311	3300031942	Soil	MTDPNPNLDPDEVDEVEQANVAAAAIAGFTLAQLAFGELIKNGILPKDHAEHLLRHAIETHATAGPGNRGAAELLAVVLQGLSAVQPPTRQ
Ga0310909_106836121	3300031947	Soil	MTDPDPDLDPDPVEQANVAAAAIAGFTLAQFAFGELIKNGILPRDQAEQLLRRAIETHATAGPGNRGAAELLA
Ga0310909_109240452	3300031947	Soil	MTDPTPDLDPDEVEQANVAAAAIAGFTLAQFAFGELIKSGILAKGDAEHLLRQAIETHETAGPGNRGAAELLAVVLQSLSAIQPPTRQ
Ga0306926_114538992	3300031954	Soil	MTDPDLDPDPVEQANVAAAAIAGFTLAQFAFGELIKNGIVPRGGAEQLLRQAIEAHATAGPGNQAAAKLLTVVLHNLYALQSPTRQ
Ga0306922_107191722	3300032001	Soil	MTDPNPNLDPDEVEQANVAAAAVAGFTLAQFAFGELIKNGILPKGDAEHLLRQAIETHATAGPGNRGAAELLAVVLQGLSAVQPPTRQ
Ga0318533_110107641	3300032059	Soil	MTDPDPDLDPDPVEQANVAAAAIAGFTLAQFAFGELIKNGILPRDQAEQLLRRAIETHATAGPGNRGAAELLAVVLQSLSAIESPTRQ
Ga0306924_112960272	3300032076	Soil	MTDPDPDPDAVEEANVAAAAIAGFTLAQFAFGELIKNGLLPRDHAEYLLKHAIETHATAGPGNRAAAELLAVVLQSLSAIESPTRQ
Ga0306920_1007393652	3300032261	Soil	MTDPDPDPDLVSDPDPVEQANIAAAAIAGFTLAQFAFGELIKNGILPRGDAEQLLRQAIEAHATAGPGNRAAAKLLAVVLQSLSEFQSPTRQ
Ga0306920_1016386831	3300032261	Soil	MTDPDPDPDAVEEANVAAAAIAGFTLAQFAFGELIRNGLLPRGHAEHLLKHAMETHATAGPGNRAAVELLAVVLRSLSAIESPTRQ
Ga0306920_1017419531	3300032261	Soil	MTDPNPNLDPDEVEQANVAAAAVAGFTLAQFAFGELIKNGILPKADAEHLLRQAIETHATAGPGNRGAAELLGVVLQGLSAIQPPTRQ
Ga0306920_1019457101	3300032261	Soil	MTDPNPNLDPDEVDEVEQANVAAAAIAGFTLAQFAFGELIRNGILPKDHAEHLLRLAIETHATAGPGNRGAAELLAVVLQGLSEIQPPTRQ
Ga0306920_1020978511	3300032261	Soil	MTDPDPNLDPDAVEQANVAAAAIAGFTLAQFAFAELIKNGILPRGHAQQLLTHAIETHATAGPGNRAAAELLAVFLQSLSAIESPTRQ
Ga0306920_1024349421	3300032261	Soil	MTDPNPNLDPDEVDEVEQANVAAAAIAGFTLAQLAFGELIKNGILPKDHAEHLLRLAIETHATAGPGNRGAAELLAVVLQGLSAVQPPTRQ
Ga0335079_104140272	3300032783	Soil	MTDPNPVDPDEVEQANVAAAAIAGFTLAQFAFGELIKSGILAKGDAEHLLRQAIETHETAGPGNRGAAELLAVVLESLSAIQPPTRQ
Ga0335081_102351912	3300032892	Soil	MTDPNPDLDPDEVEQANVAAAAIAGFTLAQFAFGELIKSGILAKGDAEHLLRQAIETHETAGPGNRGAAELLAVVLESLSAIQPPTRQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F105800

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences