NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F105753

Metagenome / Metatranscriptome Family F105753

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F105753
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 42 residues
Representative Sequence MTATEQAPGQAGPRILLVEDEPRIRDFITRALVTAGYGVT
Number of Associated Samples 85
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 86.00 %
% of genes near scaffold ends (potentially truncated) 100.00 %
% of genes from short scaffolds (< 2000 bps) 90.00 %
Associated GOLD sequencing projects 85
AlphaFold2 3D model prediction Yes
3D model pTM-score0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (53.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(50.000 % of family members)
Environment Ontology (ENVO) Unclassified
(58.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Unclassified
(52.000 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 20.59%    β-sheet: 0.00%    Coil/Unstructured: 79.41%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.44
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF00116COX2 12.00
PF00072Response_reg 2.00
PF09678Caa3_CtaG 1.00
PF00115COX1 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG1622Heme/copper-type cytochrome/quinol oxidase, subunit 2Energy production and conversion [C] 12.00
COG4263Nitrous oxide reductaseInorganic ion transport and metabolism [P] 12.00


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms53.00 %
UnclassifiedrootN/A47.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300003505|JGIcombinedJ51221_10036539All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1815Open in IMG/M
3300005164|Ga0066815_10125170Not Available503Open in IMG/M
3300005332|Ga0066388_103842831Not Available766Open in IMG/M
3300005363|Ga0008090_10068221All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1247Open in IMG/M
3300005541|Ga0070733_10109107All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1772Open in IMG/M
3300005553|Ga0066695_10398768All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia854Open in IMG/M
3300005556|Ga0066707_10131817All Organisms → cellular organisms → Bacteria1568Open in IMG/M
3300006059|Ga0075017_101621864All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → Roseomonas aerilata511Open in IMG/M
3300006102|Ga0075015_100110990All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1389Open in IMG/M
3300006173|Ga0070716_100489543All Organisms → cellular organisms → Bacteria905Open in IMG/M
3300006577|Ga0074050_11972563Not Available530Open in IMG/M
3300006854|Ga0075425_100151257All Organisms → cellular organisms → Bacteria2659Open in IMG/M
3300009174|Ga0105241_12252173Not Available541Open in IMG/M
3300009792|Ga0126374_10452881All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia912Open in IMG/M
3300010046|Ga0126384_12476374Not Available503Open in IMG/M
3300010048|Ga0126373_11046381All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia882Open in IMG/M
3300010303|Ga0134082_10341835Not Available633Open in IMG/M
3300010358|Ga0126370_12394251Not Available524Open in IMG/M
3300010361|Ga0126378_10236593All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae1916Open in IMG/M
3300010361|Ga0126378_10821297All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1038Open in IMG/M
3300010361|Ga0126378_12634878Not Available574Open in IMG/M
3300010362|Ga0126377_11275171Not Available806Open in IMG/M
3300010366|Ga0126379_10401282All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1419Open in IMG/M
3300010376|Ga0126381_101667114Not Available921Open in IMG/M
3300010376|Ga0126381_104401567Not Available545Open in IMG/M
3300010376|Ga0126381_104531653Not Available536Open in IMG/M
3300012948|Ga0126375_11103509Not Available654Open in IMG/M
3300013297|Ga0157378_10757755Not Available994Open in IMG/M
3300016270|Ga0182036_10643067Not Available854Open in IMG/M
3300016341|Ga0182035_10510295All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1028Open in IMG/M
3300016341|Ga0182035_11474893Not Available612Open in IMG/M
3300016445|Ga0182038_10117000All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae1972Open in IMG/M
3300016445|Ga0182038_10585053All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia962Open in IMG/M
3300017999|Ga0187767_10164724Not Available675Open in IMG/M
3300018027|Ga0184605_10354531Not Available662Open in IMG/M
3300021403|Ga0210397_10105611All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae1909Open in IMG/M
3300021407|Ga0210383_10715205All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia860Open in IMG/M
3300021560|Ga0126371_10892467Not Available1033Open in IMG/M
3300025910|Ga0207684_11109915Not Available658Open in IMG/M
3300025924|Ga0207694_10956288Not Available725Open in IMG/M
3300026118|Ga0207675_100443439All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1285Open in IMG/M
3300028720|Ga0307317_10324772Not Available520Open in IMG/M
3300028784|Ga0307282_10493946Not Available594Open in IMG/M
3300031090|Ga0265760_10179157Not Available707Open in IMG/M
3300031543|Ga0318516_10161814All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1287Open in IMG/M
3300031544|Ga0318534_10803720Not Available528Open in IMG/M
3300031545|Ga0318541_10059747All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae1978Open in IMG/M
3300031561|Ga0318528_10091780All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae1585Open in IMG/M
3300031564|Ga0318573_10054408All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae1963Open in IMG/M
3300031572|Ga0318515_10127116All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1350Open in IMG/M
3300031572|Ga0318515_10230656All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia993Open in IMG/M
3300031640|Ga0318555_10038062All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae2384Open in IMG/M
3300031640|Ga0318555_10153016All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1235Open in IMG/M
3300031679|Ga0318561_10079695All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae1694Open in IMG/M
3300031680|Ga0318574_10006642All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae5002Open in IMG/M
3300031713|Ga0318496_10592445Not Available612Open in IMG/M
3300031715|Ga0307476_10583265Not Available829Open in IMG/M
3300031719|Ga0306917_10681858Not Available808Open in IMG/M
3300031719|Ga0306917_10888962Not Available697Open in IMG/M
3300031744|Ga0306918_10327327All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1185Open in IMG/M
3300031748|Ga0318492_10405532Not Available717Open in IMG/M
3300031764|Ga0318535_10098123All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1281Open in IMG/M
3300031765|Ga0318554_10042748All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae2466Open in IMG/M
3300031769|Ga0318526_10014365All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2649Open in IMG/M
3300031769|Ga0318526_10122104All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1051Open in IMG/M
3300031770|Ga0318521_10479271Not Available746Open in IMG/M
3300031771|Ga0318546_10269038All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1175Open in IMG/M
3300031777|Ga0318543_10072506All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae1446Open in IMG/M
3300031779|Ga0318566_10047022All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae2041Open in IMG/M
3300031782|Ga0318552_10617225Not Available553Open in IMG/M
3300031797|Ga0318550_10642135Not Available509Open in IMG/M
3300031819|Ga0318568_10033816All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae2875Open in IMG/M
3300031821|Ga0318567_10213514All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1079Open in IMG/M
3300031821|Ga0318567_10692033Not Available578Open in IMG/M
3300031832|Ga0318499_10205557Not Available767Open in IMG/M
3300031860|Ga0318495_10522066Not Available517Open in IMG/M
3300031893|Ga0318536_10016230All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae3300Open in IMG/M
3300031896|Ga0318551_10643682Not Available613Open in IMG/M
3300031942|Ga0310916_11717806Not Available507Open in IMG/M
3300031954|Ga0306926_11547073Not Available763Open in IMG/M
3300031959|Ga0318530_10108260All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1109Open in IMG/M
3300032010|Ga0318569_10325334Not Available716Open in IMG/M
3300032039|Ga0318559_10289120Not Available760Open in IMG/M
3300032041|Ga0318549_10132301All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1104Open in IMG/M
3300032041|Ga0318549_10213398Not Available867Open in IMG/M
3300032041|Ga0318549_10219998All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia853Open in IMG/M
3300032042|Ga0318545_10098257All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1024Open in IMG/M
3300032055|Ga0318575_10332510Not Available769Open in IMG/M
3300032055|Ga0318575_10701677Not Available512Open in IMG/M
3300032059|Ga0318533_10042314All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae3004Open in IMG/M
3300032065|Ga0318513_10197146All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia969Open in IMG/M
3300032066|Ga0318514_10031378All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2492Open in IMG/M
3300032076|Ga0306924_10563389All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1292Open in IMG/M
3300032090|Ga0318518_10135366All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1246Open in IMG/M
3300032094|Ga0318540_10239056All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia877Open in IMG/M
3300032180|Ga0307471_103482490Not Available557Open in IMG/M
3300033289|Ga0310914_10875464Not Available797Open in IMG/M
3300033290|Ga0318519_10056365All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae1985Open in IMG/M
3300033290|Ga0318519_10306664All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia930Open in IMG/M
3300033807|Ga0314866_062278Not Available627Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil50.00%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil14.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil10.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil3.00%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds2.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil2.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil2.00%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil2.00%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere2.00%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere2.00%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment1.00%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil1.00%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil1.00%
PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland1.00%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland1.00%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil1.00%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil1.00%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.00%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere1.00%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.00%
Tropical Rainforest SoilEnvironmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil1.00%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300003505Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)EnvironmentalOpen in IMG/M
3300005164Soil and rhizosphere microbial communities from Laval, Canada - mgLACEnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005363Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300005541Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1EnvironmentalOpen in IMG/M
3300005553Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144EnvironmentalOpen in IMG/M
3300005556Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156EnvironmentalOpen in IMG/M
3300006059Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012EnvironmentalOpen in IMG/M
3300006102Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013EnvironmentalOpen in IMG/M
3300006173Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaGEnvironmentalOpen in IMG/M
3300006577Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPA (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300009174Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaGHost-AssociatedOpen in IMG/M
3300009792Tropical forest soil microbial communities from Panama - MetaG Plot_12EnvironmentalOpen in IMG/M
3300010046Tropical forest soil microbial communities from Panama - MetaG Plot_36EnvironmentalOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010303Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015EnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300012948Tropical forest soil microbial communities from Panama - MetaG Plot_14EnvironmentalOpen in IMG/M
3300013297Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaGHost-AssociatedOpen in IMG/M
3300016270Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080EnvironmentalOpen in IMG/M
3300016341Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170EnvironmentalOpen in IMG/M
3300016445Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108EnvironmentalOpen in IMG/M
3300017999Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_10_MGEnvironmentalOpen in IMG/M
3300018027Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coexEnvironmentalOpen in IMG/M
3300021403Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-OEnvironmentalOpen in IMG/M
3300021407Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-OEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300025910Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025924Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026118Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028720Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357EnvironmentalOpen in IMG/M
3300028784Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121EnvironmentalOpen in IMG/M
3300031090Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031543Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20EnvironmentalOpen in IMG/M
3300031544Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26EnvironmentalOpen in IMG/M
3300031545Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26EnvironmentalOpen in IMG/M
3300031561Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26EnvironmentalOpen in IMG/M
3300031564Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21EnvironmentalOpen in IMG/M
3300031572Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19EnvironmentalOpen in IMG/M
3300031640Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23EnvironmentalOpen in IMG/M
3300031679Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23EnvironmentalOpen in IMG/M
3300031680Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22EnvironmentalOpen in IMG/M
3300031713Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22EnvironmentalOpen in IMG/M
3300031715Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05EnvironmentalOpen in IMG/M
3300031719Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)EnvironmentalOpen in IMG/M
3300031744Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)EnvironmentalOpen in IMG/M
3300031748Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22EnvironmentalOpen in IMG/M
3300031764Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27EnvironmentalOpen in IMG/M
3300031765Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22EnvironmentalOpen in IMG/M
3300031769Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24EnvironmentalOpen in IMG/M
3300031770Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17EnvironmentalOpen in IMG/M
3300031771Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19EnvironmentalOpen in IMG/M
3300031777Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24EnvironmentalOpen in IMG/M
3300031779Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22EnvironmentalOpen in IMG/M
3300031782Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20EnvironmentalOpen in IMG/M
3300031797Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23EnvironmentalOpen in IMG/M
3300031819Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21EnvironmentalOpen in IMG/M
3300031821Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20EnvironmentalOpen in IMG/M
3300031832Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25EnvironmentalOpen in IMG/M
3300031860Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25EnvironmentalOpen in IMG/M
3300031893Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28EnvironmentalOpen in IMG/M
3300031896Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19EnvironmentalOpen in IMG/M
3300031942Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176EnvironmentalOpen in IMG/M
3300031954Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)EnvironmentalOpen in IMG/M
3300031959Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24EnvironmentalOpen in IMG/M
3300032010Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22EnvironmentalOpen in IMG/M
3300032039Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21EnvironmentalOpen in IMG/M
3300032041Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22EnvironmentalOpen in IMG/M
3300032042Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26EnvironmentalOpen in IMG/M
3300032055Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23EnvironmentalOpen in IMG/M
3300032059Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27EnvironmentalOpen in IMG/M
3300032065Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20EnvironmentalOpen in IMG/M
3300032066Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18EnvironmentalOpen in IMG/M
3300032076Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)EnvironmentalOpen in IMG/M
3300032090Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22EnvironmentalOpen in IMG/M
3300032094Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300033289Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108EnvironmentalOpen in IMG/M
3300033290Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15EnvironmentalOpen in IMG/M
3300033807Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_100_10EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGIcombinedJ51221_1003653913300003505Forest SoilMTTTEQAPSQGGPRILLVEDEPRIRDFITRALVTAGHEVTPAACGMEGLRLA
Ga0066815_1012517013300005164SoilMTRLLMTASEQAAGAAGPRILIVDDEPRIRDFISRALEAAGY
Ga0066388_10384283123300005332Tropical Forest SoilMNATEQAPGQAGPRILLVEDEPRIRDFITRALVMAGYGVAAAGCGTEG
Ga0008090_1006822123300005363Tropical Rainforest SoilMNATEQAPGQAGPRILLVEDEPRIRDFITRALVTAGYGVA
Ga0070733_1010910733300005541Surface SoilMTTTEQAPSQGGPRILLVEDEPRIRDFITRALVTAG
Ga0066695_1039876813300005553SoilMTRLSMTASGQAEGVAAPRILLVDDEPRICDFISRALETAGYMVDAAGS
Ga0066707_1013181733300005556SoilMTRLSMTASEQAEGAGGPRILLVDDEPRIRDFISRALETAGYAVDAACSGTE
Ga0075017_10162186413300006059WatershedsMTRLSMTASEQAESAGGPRILLVDDEPRIRDFISRALE
Ga0075015_10011099013300006102WatershedsMTRLPITASDQADGTAGRRILVVDDEPRIRDFISRALLTA
Ga0070716_10048954323300006173Corn, Switchgrass And Miscanthus RhizosphereMTRLSMTASGQAEGIAAPRILLVDDEPQICDFISRALETA
Ga0074050_1197256323300006577SoilMTRLSMTAPRQAATIAGPRILLVDDEPRICDFISRALETAGYAVD
Ga0075425_10015125713300006854Populus RhizosphereMTASGQAEGVAAPRILLVDDEPRICDFISRALETAGYMVD
Ga0105241_1225217313300009174Corn RhizosphereMTRLSMTASGQAEGIAAPRILLVDDEPRICDFISRALETAGYMVDAAGS
Ga0126374_1045288113300009792Tropical Forest SoilMTTAEQAQTHVGPRILLVEDEPRIRDFITRALVTDGYHVADSRC
Ga0126384_1247637413300010046Tropical Forest SoilMNATEQAPGQAGPRILLVEDEPRIRDFITRALVMA
Ga0126373_1104638123300010048Tropical Forest SoilMTRLLTTASEQAEGAGGPRILLVDDEPRIRDFISRALETAGYAV
Ga0134082_1034183523300010303Grasslands SoilMTRLSMTASGQAEGVAAPRILLVDDEPRICDFISRALETAGYMV
Ga0126370_1239425113300010358Tropical Forest SoilMTAPRQAETAPGPRILLVDDEPRICDFISRALETAGYA
Ga0126378_1023659313300010361Tropical Forest SoilMTTAEQAQTHVGPRILLVEDEPRIRDFITRALVTAGYHVAA
Ga0126378_1082129713300010361Tropical Forest SoilMNATEQAPGQAGPRILLVEDEPRIRDFITRALVTAGYG
Ga0126378_1263487813300010361Tropical Forest SoilMNATEQAPGQAGPRILLVEDEPRIRDFITRALVTAGY
Ga0126377_1127517113300010362Tropical Forest SoilMTAPGQAERVTGAHILLIDDEPRICDFIRRALETAGYVVDSVGSAAEGL
Ga0126379_1040128233300010366Tropical Forest SoilMTASEQAEAVAGPRILLVDDEPRIRDFISRALETAGYAVQAACSGIEGLR
Ga0126381_10166711423300010376Tropical Forest SoilMNTTEQAPGQAGPRILLVEDEPRIRDFITRALVTAGYGVA
Ga0126381_10440156713300010376Tropical Forest SoilMTIAEQAQTHLGPRILLVEDEPRIRDFITRALVTAGYHVAAAR
Ga0126381_10453165313300010376Tropical Forest SoilMTTAEQAQTHVGPRILLVEDEPRIRDFITRALVTAGYH
Ga0126375_1110350913300012948Tropical Forest SoilMTTTEQAPSQGGSRILLVEDEPRIRDFITRALVTAGYEVTPAACGTE
Ga0157378_1075775513300013297Miscanthus RhizosphereMTRLSMTASEQAEGAGGPRILLVDDEPRIRDFISRALETAGYA
Ga0182036_1064306723300016270SoilMNATEQAPGQAGPRILLVEDEPRIRDFITRALVTA
Ga0182035_1051029523300016341SoilMNTMEQALGRAGPRILLVEDEPRIRDFITRALVTAGY
Ga0182035_1147489323300016341SoilMTRLLMTAPEQAEGAGGPRILLVDDEPRIRDFISRALE
Ga0182038_1011700013300016445SoilMNRTEQAPGQAGPRILLVEDEPRIRDFITRALVTAGYGV
Ga0182038_1058505313300016445SoilMTATEQAPGQAGPRILLVEDEPRIRDFITRALVTAGYGVTAVA
Ga0187767_1016472413300017999Tropical PeatlandMTRLSMTVSEQAEGVTGPRILLVDDEPRIRDFISRA
Ga0184605_1035453113300018027Groundwater SedimentMTASGQAAGVAAPRILLVDDEPRICDFISRALETAGYMVDAAGSGTEGL
Ga0210397_1010561113300021403SoilMTTTEQAPSQGGPRILLVEDEPRIRDFITRALATA
Ga0210383_1071520513300021407SoilMTTAEQAQTHVGPRILLVEDEPRIRDFITRALVTAGYHVAAARCGT
Ga0126371_1089246713300021560Tropical Forest SoilMTRLSMTASEQAEGIGGPRILLVDDEPRIRDFISRALETAGY
Ga0207684_1110991513300025910Corn, Switchgrass And Miscanthus RhizosphereMTTTEQAPGQAGPRILLVEDEPRIRDFITRALVTAG
Ga0207694_1095628823300025924Corn RhizosphereMTRLSMTASEQAEGAGGPRILLVDDEPRIRDFISRALETAGYAV
Ga0207675_10044343913300026118Switchgrass RhizosphereMTRLSMTASEQAEGAGGPRILLVDDEPRIRDFISRALET
Ga0307317_1032477213300028720SoilMTRLSMTASGQAEGVAAPRILLVDDEPRICDFISRALETAG
Ga0307282_1049394613300028784SoilMTRLSMTASEQAEGAGGPHILLVDDEPRIRDFISRALETAGYAVDAACSG
Ga0265760_1017915723300031090SoilMTTTEQAPSQGGPRILLVEDEPRIRDFITRALVTAGYEVTPAGC
Ga0318516_1016181423300031543SoilMTRLLMTAPEQAEGAGGPRILLVDDEPRIRDFISRALETAGYAVDAACSGTE
Ga0318534_1080372013300031544SoilMTTAEQAQTHLGPRILLVEDEPRIRDFITRALVTAGY
Ga0318541_1005974733300031545SoilMTITEQAPGQAGPRILLVEDEPRIRDFITRALVTAGYAVTPAG
Ga0318528_1009178013300031561SoilMTVAEQAQSHTGPRILLVEDEPRIRDFITRALVTAGYEVAAARCGTEGL
Ga0318573_1005440813300031564SoilMNTTEQASGQGGPRILLVEDEPRIRDFITRALVTAG
Ga0318515_1012711613300031572SoilMTITEQAPGQAGPRILLVEDEPRIRDFITRALVTAGYAVTP
Ga0318515_1023065613300031572SoilMTTAEQAQTHIGPRILLVEDEPRIRDFITRALVTAGYEVAAARCGTEGLQMAQAS
Ga0318555_1003806233300031640SoilMTTTEQAPGQAGPRILLVEDEPRIRDFITRALVTAGYGVTAAACG
Ga0318555_1015301623300031640SoilMNTTEQAPGQAGPRILLVEDEPRIRDFITRALVTAGYG
Ga0318561_1007969513300031679SoilMTRLPLTASDQADGTAGQRILVVDDEPRIRDFITRALVTAGYAVDA
Ga0318574_1000664253300031680SoilMTRLPLTASDQADGTAGQRILVVDDEPRIRDFITRA
Ga0318496_1059244523300031713SoilMTRLLMTAPEQAEGAGGPRILLVDDEPRIRDFISR
Ga0307476_1058326523300031715Hardwood Forest SoilMTVAEQAQSHVGPRILLVEDEPRIRDFITRALVTAGYEVSA
Ga0306917_1068185813300031719SoilMTTAEQAQTHLGPRILLVEDEPRIRDFITRALVTAGYHVAAARCG
Ga0306917_1088896213300031719SoilMNTTEQAPGQAGPRILLVEDEPRIRDFITRALVTAGYGVAA
Ga0306918_1032732723300031744SoilMNTTEQAPGQAGPRILLVEDEPRIRDFITRALVTAG
Ga0318492_1040553213300031748SoilMNTTEQARGQTGPRILLVEDEPRIRDFITRALVTAGYGVAAAGN
Ga0318535_1009812313300031764SoilMTTTEQAPGQAGPRILLVEDEPRIRDFITRALVTAGYGVAAAGN
Ga0318554_1004274813300031765SoilMTTTEQAPGQAGPRILLVEDEPRIRDFITRALVTAGYGVTTAAC
Ga0318526_1001436513300031769SoilMTRLMTATEQAEGSAGPRILVVDDEPRIRDFVSRALETAGYVVD
Ga0318526_1012210413300031769SoilMTTAEQAQTHLGPRILLVEDEPRIRDFITRALVTAGYHVAAARCGTEGLRMA
Ga0318521_1047927123300031770SoilMTTAEQAHTHIGPRILLGEDVPRIRDFITRALVTAGYHVA
Ga0318546_1026903813300031771SoilMTATEQAPGQAGPRILLVEDEPRIRDFITRALVTAGYGVT
Ga0318543_1007250613300031777SoilMTRLPLTASDQADGTAGQRILVVDDEPRIRDFITRALVTAGYAVDAA
Ga0318566_1004702233300031779SoilMTTTEQAPGQAGPRILLVEDEPRIRDFITRALVTAGYGVTAAACGT
Ga0318552_1061722513300031782SoilMTATEQAPGQAGPRILLVEDEPRIRDFITRALVTAGYGVTT
Ga0318550_1064213513300031797SoilMNTTEQARGQTGPRILLVEDEPRIRDFITRALVTAGYGVAAA
Ga0318568_1003381643300031819SoilMTRLPLTASDQADGTAGQRILVVDDEPRIRDFITRALVTAGYAV
Ga0318567_1021351423300031821SoilMTRLPLTASDQADGTAGQRILVVDDEPRIRDFITRALVTAGYAVDAASEG
Ga0318567_1069203313300031821SoilMNTTEQASGQGGPRILLVEDEPRIRDFITRALVTAGYGVAAAGNGTEGLR
Ga0318499_1020555723300031832SoilMTRLPLTASDQADGTAGQRILVVDDEPRIRDFITRALVTAGYAVD
Ga0318495_1052206613300031860SoilMTVAEQAQSHVGPRILLVEDEPRIRDFITRALVTAGYQ
Ga0318536_1001623013300031893SoilMTVAEQAQSHVGPRILLVEDEPRIRDFITRALVTAGYQVAAARCGTEGLQ
Ga0318551_1064368213300031896SoilMNTTEQAPGQAGPRILLVEDEPRIRDFITRALVTAGYGV
Ga0310916_1171780613300031942SoilMNTTEQAPGQAGPRILLVEDEPRIRDFITRALVTAGYGVAVAEN
Ga0306926_1154707313300031954SoilMNTTEQAPGQAGPRILLVEDEPRIRDFITRALVTAGYGVAAADNGTEGLRL
Ga0318530_1010826013300031959SoilMTRLMTATEQAEGSAGPRILVVDDEPRIRDFVSRALET
Ga0318569_1032533413300032010SoilMTVAEQAQSHTGPRILLVEDEPRIRDFITRALVTAGYEVA
Ga0318559_1028912023300032039SoilMNTTEQASGQGGPRILLVEDEPRIRDFITRALVTAGYGVAAAGNGTERLR
Ga0318549_1013230113300032041SoilMTRLLMTAPGQAEGAGGPRILLVDDEPRIRDFISRALETAGYAVDAACSGT
Ga0318549_1021339813300032041SoilMTVAEQAQSHTGPRILLVEDEPRIRDFITRALVTAGYEVAAARCGTEG
Ga0318549_1021999823300032041SoilMNTTEQASGQGGPRILLVEDEPRIRDFITRALVTA
Ga0318545_1009825713300032042SoilMTRLPLTASDQADSTAGQRILVVDDEPRIRDFITRALV
Ga0318575_1033251013300032055SoilMNTTEQASGQGGPRILLVEDEPRIRDFITRALVTAGYG
Ga0318575_1070167723300032055SoilMTTAEQAQTHLGPRILLVEDEPRIRDFITRALVTAGYHVAAARC
Ga0318533_1004231443300032059SoilMTTTEQAPGQAGPRILLVEDEPRIRDFITRALVTAGYGVT
Ga0318513_1019714613300032065SoilMTRLMTATEQAEGSAGPRILVVDDEPRIRDFVSRALETA
Ga0318514_1003137843300032066SoilMNTTEQASGQGGPRILLVEDEPRIRDFITRALVTAGYGVAAAGNGTEG
Ga0306924_1056338913300032076SoilMTATEQAPGQAGPRILLVEDEPRIRDFITRALVTAGY
Ga0318518_1013536613300032090SoilMTVAEQAQSHVGPRILLVEDEPRIRDFITRALVTAGYQVAAARCGTEGLQMA
Ga0318540_1023905613300032094SoilMTRLPLTASDQADGTAGQRILVVDDEPRIRDFITRALV
Ga0307471_10348249013300032180Hardwood Forest SoilMTTTMEQTPSQGGPRILLVEDEPRIRDFITRALVTAGYAVTP
Ga0310914_1087546413300033289SoilMTTAEQAHTHIGPRILLVEDEPRIRDFITRALVTAGYHVAAARCGTEGLRMA
Ga0318519_1005636513300033290SoilMTTTEQAPGQAGPRILLVEDEPRIRDFITRALVTAGYGVTAA
Ga0318519_1030666423300033290SoilMNTTEQAPGQAGPRILLVEDEPRIRDFITRALVTAGYGVAAADNGTEG
Ga0314866_062278_475_6273300033807PeatlandMTRLSTTTSEQAEGVAGPRILLVDDEPRIRDFISRALETAGYTVDAAGSGT


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