NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F105714

Metagenome / Metatranscriptome Family F105714

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F105714
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 104 residues
Representative Sequence MQTKRRRLTAVRGILPTAVLCASTIGCSGRAARSVDRFYGIVNSPAADGKLVSIDVRDQNDVTITPIGAIGTFGCTSVALSSQGTLYSVCGPADFADTQHKYGCM
Number of Associated Samples 84
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 97.98 %
% of genes near scaffold ends (potentially truncated) 99.00 %
% of genes from short scaffolds (< 2000 bps) 95.00 %
Associated GOLD sequencing projects 81
AlphaFold2 3D model prediction Yes
3D model pTM-score0.28

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (94.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere
(14.000 % of family members)
Environment Ontology (ENVO) Unclassified
(29.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(59.000 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 12.03%    β-sheet: 27.82%    Coil/Unstructured: 60.15%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.28
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF07638Sigma70_ECF 6.00
PF07676PD40 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG1595DNA-directed RNA polymerase specialized sigma subunit, sigma24 familyTranscription [K] 6.00

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms94.00 %
UnclassifiedrootN/A6.00 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000363|ICChiseqgaiiFebDRAFT_10616695All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium544Open in IMG/M
3300001305|C688J14111_10055390All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1198Open in IMG/M
3300004463|Ga0063356_105479347All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium545Open in IMG/M
3300004798|Ga0058859_11701148All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium831Open in IMG/M
3300005293|Ga0065715_10607258All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium704Open in IMG/M
3300005293|Ga0065715_10907704All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium501Open in IMG/M
3300005293|Ga0065715_11035555Not Available536Open in IMG/M
3300005294|Ga0065705_11133121All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium515Open in IMG/M
3300005331|Ga0070670_100244702All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1562Open in IMG/M
3300005338|Ga0068868_100461195All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1107Open in IMG/M
3300005341|Ga0070691_11061049Not Available509Open in IMG/M
3300005365|Ga0070688_100338121All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1098Open in IMG/M
3300005436|Ga0070713_100408457All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1269Open in IMG/M
3300005440|Ga0070705_100579117All Organisms → cellular organisms → Bacteria865Open in IMG/M
3300005444|Ga0070694_100629344All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium867Open in IMG/M
3300005456|Ga0070678_101635633All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium605Open in IMG/M
3300005468|Ga0070707_101275813All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium701Open in IMG/M
3300005543|Ga0070672_101472168All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium610Open in IMG/M
3300005544|Ga0070686_100577465All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium883Open in IMG/M
3300005544|Ga0070686_101692274All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium537Open in IMG/M
3300005546|Ga0070696_101033846All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium688Open in IMG/M
3300005616|Ga0068852_100738483All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium996Open in IMG/M
3300005764|Ga0066903_101047923All Organisms → cellular organisms → Bacteria1497Open in IMG/M
3300005764|Ga0066903_105904038All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium642Open in IMG/M
3300006173|Ga0070716_101142625All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium623Open in IMG/M
3300006175|Ga0070712_100807335All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium805Open in IMG/M
3300006854|Ga0075425_100439390All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1502Open in IMG/M
3300007076|Ga0075435_101723942All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium550Open in IMG/M
3300009011|Ga0105251_10099015All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1334Open in IMG/M
3300009094|Ga0111539_10208259All Organisms → cellular organisms → Bacteria2279Open in IMG/M
3300009094|Ga0111539_10236834All Organisms → cellular organisms → Bacteria2125Open in IMG/M
3300009094|Ga0111539_10881249All Organisms → cellular organisms → Bacteria1041Open in IMG/M
3300009094|Ga0111539_11709393All Organisms → cellular organisms → Bacteria730Open in IMG/M
3300009094|Ga0111539_11937254Not Available683Open in IMG/M
3300009100|Ga0075418_10843173All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium990Open in IMG/M
3300009147|Ga0114129_12546261All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium611Open in IMG/M
3300009147|Ga0114129_12868151All Organisms → cellular organisms → Bacteria571Open in IMG/M
3300009156|Ga0111538_10059176All Organisms → cellular organisms → Bacteria → Acidobacteria4890Open in IMG/M
3300009156|Ga0111538_12982789All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium591Open in IMG/M
3300009162|Ga0075423_11125129All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium837Open in IMG/M
3300009177|Ga0105248_12048059All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium650Open in IMG/M
3300009551|Ga0105238_11784355All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium647Open in IMG/M
3300009610|Ga0105340_1247632All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium763Open in IMG/M
3300010373|Ga0134128_12332694Not Available589Open in IMG/M
3300010403|Ga0134123_10842546All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium916Open in IMG/M
3300012201|Ga0137365_10685157All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium749Open in IMG/M
3300012354|Ga0137366_10933042All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium608Open in IMG/M
3300012532|Ga0137373_10292602All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1297Open in IMG/M
3300012908|Ga0157286_10069657All Organisms → cellular organisms → Bacteria958Open in IMG/M
3300012914|Ga0157297_10220435All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium668Open in IMG/M
3300012961|Ga0164302_11315458All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium585Open in IMG/M
3300013105|Ga0157369_11892736All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium606Open in IMG/M
3300013308|Ga0157375_11946007All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium698Open in IMG/M
3300014326|Ga0157380_11245964All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium789Open in IMG/M
3300015359|Ga0134085_10621672All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium504Open in IMG/M
3300015373|Ga0132257_101162240All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium976Open in IMG/M
3300015374|Ga0132255_100690863All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1514Open in IMG/M
3300016294|Ga0182041_11270095All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium673Open in IMG/M
3300016422|Ga0182039_11920581All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium544Open in IMG/M
3300018073|Ga0184624_10091509All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1292Open in IMG/M
3300023069|Ga0247751_1086206All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium556Open in IMG/M
3300023261|Ga0247796_1082092All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium599Open in IMG/M
3300025901|Ga0207688_10221354All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1140Open in IMG/M
3300025908|Ga0207643_11064020All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium522Open in IMG/M
3300025916|Ga0207663_10340673All Organisms → cellular organisms → Bacteria → Acidobacteria1132Open in IMG/M
3300025920|Ga0207649_11414358All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium550Open in IMG/M
3300025930|Ga0207701_10182918All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1848Open in IMG/M
3300025936|Ga0207670_10254226All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1359Open in IMG/M
3300025939|Ga0207665_10848937All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium723Open in IMG/M
3300026075|Ga0207708_11607800All Organisms → cellular organisms → Bacteria → Acidobacteria571Open in IMG/M
3300026116|Ga0207674_10402479All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1323Open in IMG/M
3300026116|Ga0207674_11659552All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium607Open in IMG/M
3300027332|Ga0209861_1060784All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium557Open in IMG/M
3300027907|Ga0207428_10387173All Organisms → cellular organisms → Bacteria → Acidobacteria1025Open in IMG/M
3300028380|Ga0268265_11133130Not Available778Open in IMG/M
(restricted) 3300031197|Ga0255310_10234546All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium518Open in IMG/M
3300031547|Ga0310887_10680348All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium637Open in IMG/M
3300031547|Ga0310887_10957989All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium544Open in IMG/M
3300031847|Ga0310907_10074744All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1394Open in IMG/M
3300031890|Ga0306925_11630173All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium626Open in IMG/M
3300031901|Ga0307406_11705628All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium558Open in IMG/M
3300031908|Ga0310900_10902387All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium721Open in IMG/M
3300031908|Ga0310900_11532939All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium563Open in IMG/M
3300031913|Ga0310891_10077622All Organisms → cellular organisms → Bacteria984Open in IMG/M
3300031940|Ga0310901_10331620All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium647Open in IMG/M
3300031947|Ga0310909_10936581All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium710Open in IMG/M
3300032008|Ga0318562_10668850All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium598Open in IMG/M
3300032012|Ga0310902_10602931All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium729Open in IMG/M
3300032017|Ga0310899_10282720All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium764Open in IMG/M
3300032075|Ga0310890_11095875All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium644Open in IMG/M
3300032075|Ga0310890_11272722All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium601Open in IMG/M
3300032076|Ga0306924_11751621All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium649Open in IMG/M
3300032179|Ga0310889_10312984All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium760Open in IMG/M
3300032421|Ga0310812_10547164All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium520Open in IMG/M
3300033412|Ga0310810_10215438All Organisms → cellular organisms → Bacteria2152Open in IMG/M
3300033412|Ga0310810_10351607All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1550Open in IMG/M
3300033412|Ga0310810_10890657All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium784Open in IMG/M
3300034678|Ga0314803_116808All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium538Open in IMG/M
3300034817|Ga0373948_0096769All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium691Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere14.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil13.00%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere11.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil7.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil4.00%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere4.00%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil3.00%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere3.00%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere3.00%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil2.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil2.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil2.00%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil2.00%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere2.00%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere2.00%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere2.00%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil1.00%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment1.00%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil1.00%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere1.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil1.00%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere1.00%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil1.00%
Groundwater SandEnvironmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand1.00%
Sandy SoilEnvironmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil1.00%
Host-AssociatedHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated1.00%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.00%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere1.00%
Corn, Switchgrass And Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere1.00%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere1.00%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere1.00%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.00%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere1.00%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere1.00%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.00%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere1.00%
Rhizosphere SoilHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil1.00%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere1.00%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere1.00%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere1.00%

Visualization
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000363Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300001305Grasslands soil microbial communities from Hopland, California, USAEnvironmentalOpen in IMG/M
3300004463Combined assembly of Arabidopsis thaliana microbial communitiesHost-AssociatedOpen in IMG/M
3300004798Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-2 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300005293Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1Host-AssociatedOpen in IMG/M
3300005294Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk SoilEnvironmentalOpen in IMG/M
3300005331Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaGHost-AssociatedOpen in IMG/M
3300005338Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2Host-AssociatedOpen in IMG/M
3300005341Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaGEnvironmentalOpen in IMG/M
3300005365Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaGEnvironmentalOpen in IMG/M
3300005436Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaGEnvironmentalOpen in IMG/M
3300005440Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaGEnvironmentalOpen in IMG/M
3300005444Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaGEnvironmentalOpen in IMG/M
3300005456Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaGHost-AssociatedOpen in IMG/M
3300005468Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaGEnvironmentalOpen in IMG/M
3300005543Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaGHost-AssociatedOpen in IMG/M
3300005544Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaGEnvironmentalOpen in IMG/M
3300005546Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaGEnvironmentalOpen in IMG/M
3300005616Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2Host-AssociatedOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300006173Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaGEnvironmentalOpen in IMG/M
3300006175Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaGEnvironmentalOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300007076Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4Host-AssociatedOpen in IMG/M
3300009011Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaGHost-AssociatedOpen in IMG/M
3300009094Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009100Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2Host-AssociatedOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009156Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009162Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2Host-AssociatedOpen in IMG/M
3300009177Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaGHost-AssociatedOpen in IMG/M
3300009551Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaGHost-AssociatedOpen in IMG/M
3300009610Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700EnvironmentalOpen in IMG/M
3300010373Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4EnvironmentalOpen in IMG/M
3300010403Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3EnvironmentalOpen in IMG/M
3300012201Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012354Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012532Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaGEnvironmentalOpen in IMG/M
3300012908Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1EnvironmentalOpen in IMG/M
3300012914Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2EnvironmentalOpen in IMG/M
3300012961Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MGEnvironmentalOpen in IMG/M
3300013105Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaGHost-AssociatedOpen in IMG/M
3300013308Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaGHost-AssociatedOpen in IMG/M
3300014326Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaGHost-AssociatedOpen in IMG/M
3300015359Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015EnvironmentalOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300016294Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178EnvironmentalOpen in IMG/M
3300016422Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111EnvironmentalOpen in IMG/M
3300018073Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1EnvironmentalOpen in IMG/M
3300023069Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S049-202B-5EnvironmentalOpen in IMG/M
3300023261Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S166-409R-6EnvironmentalOpen in IMG/M
3300025901Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)Host-AssociatedOpen in IMG/M
3300025908Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025916Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025920Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025927Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025930Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)EnvironmentalOpen in IMG/M
3300025936Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025939Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026075Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026116Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300027332Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_30_40 (SPAdes)EnvironmentalOpen in IMG/M
3300027907Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)Host-AssociatedOpen in IMG/M
3300028380Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300031197 (restricted)Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH1_T0_E1EnvironmentalOpen in IMG/M
3300031547Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4EnvironmentalOpen in IMG/M
3300031847Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4EnvironmentalOpen in IMG/M
3300031890Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)EnvironmentalOpen in IMG/M
3300031901Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2Host-AssociatedOpen in IMG/M
3300031908Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1EnvironmentalOpen in IMG/M
3300031913Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D4EnvironmentalOpen in IMG/M
3300031940Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D2EnvironmentalOpen in IMG/M
3300031947Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000HEnvironmentalOpen in IMG/M
3300032008Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18EnvironmentalOpen in IMG/M
3300032012Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3EnvironmentalOpen in IMG/M
3300032017Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4EnvironmentalOpen in IMG/M
3300032075Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3EnvironmentalOpen in IMG/M
3300032076Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)EnvironmentalOpen in IMG/M
3300032179Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2EnvironmentalOpen in IMG/M
3300032421Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NN3EnvironmentalOpen in IMG/M
3300033412Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NCEnvironmentalOpen in IMG/M
3300034678Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48R4 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300034817Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1Host-AssociatedOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
ICChiseqgaiiFebDRAFT_1061669523300000363SoilMLTRRGRLTTVQASVLITVLCAFTNGCSGRAPRNVDRFYGIVNSPAADGKLVAIDVRNQNDVTITPIGVIGTYGCTSVALSKDGTLYSVCGPSAGADPDKYGCMTPGPQ
C688J14111_1005539023300001305SoilMQTRSRRLTAVRGVLLMAVLCASTIGCSGRARTADRFYGIVNSPAADGKLVSIDVRDQNDVTVTPIGTIGTFGCTSVALSKEGTLYSICGPGNFADTQHKY
Ga0063356_10547934713300004463Arabidopsis Thaliana RhizosphereMQTKRRRLTAVRGILATAVLCVSTMGCSGRAARSVDRFYGIVNSPAADGKLVSIEVRDQNDVTITPIGAIGTFGCTSVALSSQGTLYSVCGPGDFADTQHKYGCMTPGPQQLATIDPKTGHATMFGA
Ga0058859_1170114823300004798Host-AssociatedMLTKPARLTAMRAILPMALLCASTIGCSGRARSVDRFYGIVNSPAADGKLVSIDVRNQNDVTITPIGTIGTFGCTSVALSREGTLYSICGPGNFA
Ga0065715_1060725823300005293Miscanthus RhizosphereMQTKRRRLTAVRGILATAVLCVSTMGCSGRAARSVDRFYGIVNSPAADGKLVSIDVRDQNDVTITPIGAIGTFGCTSVALSSQGTLYSVCGPGDFADTQHKYGCMTPGPQQLATIDPKTGHA
Ga0065715_1090770413300005293Miscanthus RhizosphereMQTKLGRLTAVLGIFPMAVLCASTLGCSRSPARSVDRFYGIVNSPAADGKLVSIDVRNQNDVTITPIGAIGTFGCTSVALSKQGTLYSVCGPNDFVDSQHKYGCMTPGPQQLATIDPKT
Ga0065715_1103555513300005293Miscanthus RhizosphereMQTKRGRLRAVRGVLLAVALCGSTIGCWGRARGVDRFYGIVNSPAADGKLVTIDVRDQNDVTITPIGTIGTFGCTSVALSKEGTLYSVC
Ga0065705_1113312123300005294Switchgrass RhizosphereMQAKRRRLTAVRGILATAALCASTIGCSGRAARSVDRFYGIINSPAADAKLVSIDVRDQNDVTITPIGAIGTFGCTSVALSSQGTLYSVCGPGDFADTQHKYGCMTPGPQQLAT
Ga0070670_10024470223300005331Switchgrass RhizosphereMQTTRGRFTAVRCILPMAVLCASTVGCSGKARSVDRFYGIVNSPAADGKLVAIDVRDQNEVTITPIGTIGTFGCTSVALSKEGTLYSVCGPSNFTDTEHKYGCMTPGPQ
Ga0068868_10046119533300005338Miscanthus RhizosphereMQTERGRLTAVRRILPMAVLCASTFGCSGRAARSVDRFYGIVNSPAADGKLVSIEVRDQNDVTITPIGAIGTYGCTSVALSSQGTLYSVCGPGDFAD
Ga0070691_1106104913300005341Corn, Switchgrass And Miscanthus RhizosphereMQTKRGRLTAMRAILPMALLCASTVGCSERARSVDRFYGIVNSPAADGKLVSIDVRNQNDVTITPIGTIGTFGCTSVALSREGTLYSICGP
Ga0070688_10033812113300005365Switchgrass RhizosphereMQTTHRRLTAARGILPMAVLCASTFGCSGRAARSVDRFYGIVNSPAADGKLVSIEVRDQNDVTITPIGAIGTYGCTSVALSSQGTLYSVCGPGDFADTQHKYACMTPGPQQLA
Ga0070713_10040845723300005436Corn, Switchgrass And Miscanthus RhizosphereMQTQRGRLTVVRGILMAVLSASAVGCSGHATGGVDRFYGIVNSPAADGKLVSIDVRGPNDVTITPIGTIGTFGCTSVAQSSQGILYSVCGPSNFVDSQHKYFCMTPGPQRLTT
Ga0070705_10057911723300005440Corn, Switchgrass And Miscanthus RhizosphereMQTKRRPLTAVRGILATAVLCVSTAGCSGRAARSVDRFYGIVNSPAADGKLVSIDVRDQNDVTITPIGAIGTFGCTSVALSSQGTLYSVCGPGD
Ga0070694_10062934413300005444Corn, Switchgrass And Miscanthus RhizosphereMQTTHRRLTAARGILPMAVLCASTFGCSGRAARSVDRFYGIVNSPAADGKLVSIEVRDQNDVTITPIGAIGTYGCTSVALSSQGTLYSVCGPLDFADTQHKYGCMTPGPQQLATIDPKTGHATM
Ga0070678_10163563313300005456Miscanthus RhizosphereMQTKRARLTAIQGILPVAVLCVSTIGCSGAGRSVDRFYGIVNSPAADGKLVSIDVRDQNDVTITPIGTIGTFGCTSVALSKEGTLYSICGPGNFADTQHKYGCMTPGPQQLATIDPKTGHATMFGA
Ga0070707_10127581313300005468Corn, Switchgrass And Miscanthus RhizosphereMQTTRGRLTAVRGALLAVLLGASTIGCSGRGARGVDRFYGIVNSPAADGKLVAIDVRDRNDVTITPIGTIGTFGCTSVALSKEGTLYSVCGPSNFADTQQKYGCMTPGPQQLA
Ga0070672_10147216823300005543Miscanthus RhizosphereMQTKRARLTAIQGILPVAVLCVSTIGCSGAGRSVDRFYGIVNSPAADGKLVSIDVRDQNDVTITPIGTIGTFGCTSVALSKEGTLYSVCGPGNFVDTQQKYGCMTPGPQQLATIDPKTG
Ga0070686_10057746513300005544Switchgrass RhizosphereMQTTHRRLTAARGILPMAVLCASTFGCSGRAARSVDRFYGIVNSPAADGKLVSIEVRDQNDVTITPIGAIGTYGCTSVALSSQGTLYSVCGPGDFADTQHKYACMTPGPQQLATIDPRTGHANMFGAP
Ga0070686_10169227413300005544Switchgrass RhizosphereMQPTRRRLAGVRRILPIAVVCVSTIGCAGRATRSVDRFYGIVNSPAADGKLVAIDVRGQNDVTITPVGTIGTFGCTSVARSAQGTLYSVCGPSEGADTHKYGCMTPGPQQLATIDPKTGH
Ga0070696_10103384623300005546Corn, Switchgrass And Miscanthus RhizosphereMQTKRRPLTAVRGILATAVLCVSTAGCSGRAARSVDRFYGIVNSPAADGKLVSIDVRDQNDVTITPIGAIGTFGCTSVALSSQGTLYSVCGPGDFADTQH
Ga0068852_10073848323300005616Corn RhizosphereMQTKRARLTAIQGILPVAVLCVSTIGCSGAGRSVDRFYGIVNSPAADGKLVSIDVRDQNDVTITPIGTIGTFGCTSVALSKEGTLYSICGPGNFADTQHKYGCMT
Ga0066903_10104792313300005764Tropical Forest SoilMQTKRGRFTAVRAIVPVAVLCASTMGCSGTATRSVDRFYGIINSPAPDAKLVSIDVRNQNDVTITPIGAVGTFGCTSVALSSQGTLYSICGPNDFADTQHKYACMT
Ga0066903_10590403823300005764Tropical Forest SoilMQTTRARRTAVRGIPLVALLCASTLGCSGRATRGVDRFYGIVNSPAADGKLVSIDVRGPNDVTITPIGTIGAFGCTSVALSSQGTLYSVCGPGDFVDKKHQYFCMTPGPQRLATI
Ga0070716_10114262523300006173Corn, Switchgrass And Miscanthus RhizosphereMQTPRGRLTAILPMAVLCAAAIGCSGRAARSVDRFYGIVNSPAADGKLVSIDVRDQHDVTITPIGTIGTFGCTSVALSKEGTLYSICGPGNFADTQHKYGCM
Ga0070712_10080733513300006175Corn, Switchgrass And Miscanthus RhizosphereMQTKRGRLTALRAVLPIAVLCASTIGCLGRARSGDRFYGIVNSPAADGKLVSIDVRNQNDVTITPIGTIGTFGCTSVALSKEGTLYSICGPANFADTQHKYGC
Ga0075425_10043939023300006854Populus RhizosphereMQRKCRRLTAVGGTLLAAVLCASTIGCAGRGARGVDRFYGIVNSPAADGKLVSIDVRDQNDVTITPIGTIGTFGCASVALSKEGTLYSVCGPSNFADTQH
Ga0075435_10172394223300007076Populus RhizosphereMPTKRARFTAVLGFPMAMLCASTLGCSGSTARSVDRFYGIVNSPAADGKLVSIDVRNQNDVTITPIGAIGTFGCTSVALSKQGTLYSVCG
Ga0105251_1009901533300009011Switchgrass RhizosphereMAVLCAATIGCSGRAARSVDRFYGIVNSPAADGKLVSIDVRDQNDVTITPIGAIGTFGCTSVALASQGTLYSVCGPSDFVDSQDKYGCMTPGPQQLATIDPKTGHATMFGAPVEKLNVMA
Ga0111539_1020825923300009094Populus RhizosphereMAMLCVSTLACSGKAGRSVDRFYGIVNNPAADGKLVAIDVRDQNDVTITPIGAIGTYGCASVALSKDGTLYSVCGP
Ga0111539_1023683423300009094Populus RhizosphereMAVLCASTLGCSGRAARSVDRFYGIVNNPAADGKLVAIDVRDQNDVTITPIGAIGTYGCASVALSKDGTLYSVCGP
Ga0111539_1088124913300009094Populus RhizosphereVRFISQKEQQMQAKRRRLTAVRGILATAALCASTIGCSGRAARSVDRFYGIVNSPAADGKLVSIDVRDQNDVTITPIGAIGTFGCTSVALSSQGT
Ga0111539_1170939323300009094Populus RhizosphereMAVLCASTFGCSGRAARSVDRFYGIVNSPAADGKLVSIEVRDQNDVTITPIGAIGTYGCTSVALSSQGT
Ga0111539_1193725413300009094Populus RhizosphereMVDDPEGAVMQTKRGRLKSVRGVLLAVVLCASTIGCGGRARGVDRFYGIVNSPAADGKLVAIDVRDQNDVTITPIGTIGTFGCTSVALSKEGTLYSVCGPGNFVDTQH
Ga0075418_1084317313300009100Populus RhizosphereMAMLCVSTLACSGKAGRSVDRFYGIVNNPAADGKLVAIDVRDQNDVTITPIGAIGTYGCASVALSKDGTLYSVCGPNDFADTQ
Ga0114129_1254626113300009147Populus RhizosphereMAVLCASTTGCSGKAARSVDRFYGIVNSPAADGKLVSIDVRDQNDITITPIGTIGTFGCTSVAL
Ga0114129_1286815123300009147Populus RhizosphereMAVLCASTIGCSGRAARSVDRFYGIVNNPAADGKLVAIEVRDQNDVTITPVGAIGTYGCASVALSKDGTLYSVCGP
Ga0111538_1005917613300009156Populus RhizosphereMAMLCVSTLACSGKAGRSVDRFYGIVNNPAADGKLVAIDVRDQNDVTITPIGAIGTYGCASVALSKDGTLY
Ga0111538_1298278913300009156Populus RhizosphereVALCTTGCGGRARGVDRFYGIVNSPAADGKLVAIDVRDQNDVTITPIGAIGTFGCTSVALSKEGTLYSVCGPGNFADTQGKYGC
Ga0075423_1112512913300009162Populus RhizosphereMAVLCASTTGCSGKAARSVDRFYGIVNSPAADGKLVSIDVRDQNDITITPIGTIGTFGCTSVALSREGALYSICGPSNFADTQQKYGCMTPGPQQLATIDPKTGHATMFGAPVEKLNVMA
Ga0105248_1204805923300009177Switchgrass RhizosphereMQPTRRRLAGVRGILPIAVVCVSTIGCAGRATRSVDRFYGIVNSPAADGKLVAIDVRGQNDVTITPVGTIGTFGCTSVARSAQGTLYSVCGPGEGADTHKYGCM
Ga0105238_1178435513300009551Corn RhizosphereVLCVSTIGCSGAGRSVDRFYGIVNSPAADGKLVSIDVRDQNDVTITPIGTIGTFGCTSVALSKEGTLYSICGPGNFV
Ga0105340_124763223300009610SoilMQTKRGRLRAARGVLLAVVLCGSTIGCGGRARGVDRFYGIVNSPAADGKLVAIDVRDQNDVTITPIGTIGTFGCTSVALSKEGTLYSVCGPGNFAD
Ga0134128_1233269413300010373Terrestrial SoilMQTKRGRLTALRAVLPIAVLCASTIGCLGRARSGDRFYGIVNSPAADGKLVSIDVRNQNDVTITPIGTIGTFGCTSVALSKEGTLYSICGLANFADTQHKYGCMTPGPQQLATIDPKTGHATMFGAP
Ga0134123_1084254613300010403Terrestrial SoilMAVLCASTFGCSGRAARSVDRFYGIVNSPAADGKLVSIEVRDQNDVTITPIGAIGTYGCTSVALSSQGSLYSVCGPADFADTQQKYGCMTPGPQQLATIDSKTGHATMFGAPVEKLN
Ga0137365_1068515713300012201Vadose Zone SoilMAVLCASTIGCSGRAARSLDRFYGIVNSPAADGKLVSIDVRDQNDVTITPIGAIGTFGCTSVALSSQGTLYSVCGPGDFADTQHKYGCMTPGPQQLATIDPKTGHATM
Ga0137366_1093304223300012354Vadose Zone SoilMAVLCASIAGCSGKPARSVDRFYGIVNSPAADGKLVSIDVRDQNDVTITPIGAIGTFGCTSVALSSQGTLYSVCGPNDFADSQHKYGCM
Ga0137373_1029260213300012532Vadose Zone SoilMAVLCASTAGCWGQAARSVDRFYGIVNSPAADGKLVAIDVRDQNDVTITPIGAIGTFGCTSVALSKEGTLYSVCGPGNFADTQHKYGCMTPGPQQLATIDP
Ga0157286_1006965723300012908SoilMAVLCASTFGCSGRAARSVDRFYGIVNSPAADGKLVSIEVRDQNDVTITPIGAIGTYGCTSVALSSQGTLYSVCGPGDFA
Ga0157297_1022043523300012914SoilMDFGHPQGAVMQIKRERLTAVGAMLLAVLCASTIGCSGRGARGVDRFYGIVNSPAADGKLVSIDVRDQNDVTITPIGAIGMYGCTSVALSSQGTLYSVCGPANFADTESKFGCMTPGPQQLATIDP
Ga0164302_1131545813300012961SoilMAVLCASTLGCSRSPARSVDRFYGIVNSPAADGKLVSIDVRNQNDVTITPIGAIGTFGCTSVALSSQGTLYSVCGPNDFADTQHKYG
Ga0157369_1189273623300013105Corn RhizosphereMQTKRGRLTALRAVLPIAVLCASTIGCLGRARSGDRFYGIVNSPAADGKLVSIDVRNQNDVTITPIGPIGTFGCTSVALSKEGTLYSICGPANFADTQHKYGCMTPGPQQLATIDP
Ga0157375_1194600723300013308Miscanthus RhizosphereMALLCASTIGCSGPARSVDRFYGIVNSPAADGKLVSIDVRNQNDVTITPIGTIGTFGCTSVALSREGTLYSICGP
Ga0157380_1124596423300014326Switchgrass RhizosphereMAVLCASTLGCSRSPARSVDRFYGIVNSPAADGKLVSIDVRNQNDVTITPIGAIGTFGCTSVALSKQGTLYSVCGPNDFVDSQHKYGCMTPRPQQLATIDPKTGH
Ga0134085_1062167213300015359Grasslands SoilMAVLCASTIGCSGRAARSVDRFYGIINSPAADGKLVSIDVRDQNDVTITPIGAIGTFGCASVALSSQGTLYSVCGPSDFVDSQHKYGCM
Ga0132257_10116224013300015373Arabidopsis RhizosphereMAMLCASTLGCSGSTARSVDRFYGIVNSPAADGKLVSIDVRNQNDVTITPIGAIGTFGCTSVALSSQGTLYSVCGPNDFADTQH
Ga0132255_10069086313300015374Arabidopsis RhizosphereVRFISQKEQQMQAKRRRLTAVRGILATAAMCASTIGCSGRAARSVDRFYGIINSPAADGKLVSIDVRDQNDVTITPIGAIGTFGCTSVALSKQGTLYSICGPADFADTQHK
Ga0182041_1127009523300016294SoilMQTTRGRLTRVRGILLVATLCASTIGCSGHGARGVDRFYGIVNSPAADGKLVAIDVRDQNDVTITPIGAIGTFGCTSVALSKEGTLYSVCGPSNFTDSKHK
Ga0182039_1192058113300016422SoilMQTKRGRLTEVRGILLVAMLCASTVGCSGRGARGVDRFYGIVKSPAADAKLVAIDVRDQNDVTITPIGAIGTFGCTSVALSREGTLYSVCGPGSFADTQHKYGCMTPGPQQLATIDPKTGLSSDAQLGDWLGPQNNA
Ga0184624_1009150913300018073Groundwater SedimentMQTKLGRLTAVLGIFPMAVLCASTLGCSRSPARSVDRFYGIVNSPAAAGKLVSIDVRNQNDVTITPIGAIGTFGCTSVALSSQGTLYSVCGPSNFADTQHKYGCMTPGPQQLATIDPKTGHATMFGAPV
Ga0247751_108620613300023069SoilMQIKRERLTAVGAMLLAVLCASTIGCSGRGARGVDRFYGIVNSPAADGKLVSIDVRDQNDVTITPIGAIGMYGCTSVALSSQGTLYSVCGPANFADTESKFGCMTPGPQQLATI
Ga0247796_108209223300023261SoilMQIMRERLTAVGAMLLAVLCASTIGCSGRGARGVDRFYGIVNSPAADGKLVSIDVRDQNDVTITPIGAIGMYGCTSVALSSQGTLYSVC
Ga0207688_1022135413300025901Corn, Switchgrass And Miscanthus RhizosphereMQTERGRLTAVRRILPMAVLCASTIGCSGRAARSVDRFYGIVNSPAADGKLVSIDVRDQNDVTITPIGAIGTFGCTSVALASQGTLYSVCGPSDFVDSQHKYGCMTPGPQQLA
Ga0207643_1106402013300025908Miscanthus RhizosphereMQTTHRRLTAARGILPMAVLCASTFGCSGRAARSVDRFYGIVNSPAADGKLVSIEVRDQNDVTITPIGAIGTYGCTSVALSSQGTLYSVCGPGDFADTQHKYACMTPGPQQLATIDPR
Ga0207663_1034067323300025916Corn, Switchgrass And Miscanthus RhizosphereMQTKRGRLTALRAVLPIAVLCASTIGCLGRARSGDRFYGIVNSPAADGKLVSIDVRNQNDVTITPIGTIGTFGCTSVALSKEGTLYSICGPANFA
Ga0207649_1141435813300025920Corn RhizosphereMQTERGRLTAVRRILPMAVLCAATIGCSGRTARSVDRFYGIVNSPAADGKLVSIDVRDQNDVTITPIGAIGTFGCTSVALASQGTLYSVCGPSDFVDAQEKYGCMTPGPQRLAT
Ga0207687_1008750333300025927Miscanthus RhizosphereMQTKRGRLTAMRAILPMALLCASTIGCSGRARSVDRFYGIVNSPAADGKLVSIDVRNQNDVTITPIGTIGTFGCTSVALSREGT
Ga0207701_1018291813300025930Corn, Switchgrass And Miscanthus RhizosphereMQKTRRRLTAVRAILSMAVLCVSTIGCSGRAARSVDRFYGIVNNPAADGKLVAIDVRDQNDVTITPIGAIGTYGCTSVALASQGTLYSVCGPSDFVDAQEKYGCMTPGPQRLATIDPKTGHATMFGAPVEK
Ga0207670_1025422623300025936Switchgrass RhizosphereMQIKRERLTAVGAMLLAVLCASTIGCSGRGARGVDRFYGIVNSPAADGKLVSIDVRDQNDVTITPIGAIGMYGCTSVALSSQGTLYSVCGPANFADT
Ga0207665_1084893723300025939Corn, Switchgrass And Miscanthus RhizosphereMQTPRGRLTAILPMAVLCAAAIGCSGRAARSVDRFYGIVNSPAADGKLVSIDVRNQNDVTITPIGTIGTFGCTSVALSKEGTLYSICGPANFADTQHKY
Ga0207708_1160780013300026075Corn, Switchgrass And Miscanthus RhizosphereMQTTHRRLTAARGILPMAVLCASTFGCSGRAARSVDRFYGIVNSPAADGKLVSIEVRDQNDVTITPIGAIGTYGCTSVALSSQGTLYSV
Ga0207674_1040247933300026116Corn RhizosphereMQTERGRLTAVRRILPMAVLCASTIGCSGRAARSVDRFYGIVNSPAADGKLVSIDVRDQNDVTITPIGAIGTFGCTSVALASQGTLYSVCGPSDFVDSQHKYGCMTPGPQQLATIDPKTG
Ga0207674_1165955213300026116Corn RhizosphereMQTTHRRLTAARGILPMAVLCASTFGCSGRAARSVDRFYGIVNSPAADGKLVSIEVRDQNDVTITPIGAIGTYGCTSVALSSQGTLYSVCGPGDFADTQHKYACMTPGPQQLATIDPRTGHANMFG
Ga0209861_106078423300027332Groundwater SandMQTKRGRLTAVRGILPMAVLCASTIGCSGSTSRSVDRFYGIVNSPAADGKLVSIDVRDQNDVTITPIGAIGTFGCTSVALSSQGTLYSVCGPSNFVDTQHKYACMTPGPQQLATIDPKT
Ga0207428_1038717323300027907Populus RhizosphereMQIKRERLTAVGAMLLAVLCASTIGCSGRGARGVDRFYGIVNSPAADGKLVSIDVRDQNDVTITPIGAIGMYGCTSVALSSQGTLYSVCGPANFA
Ga0268265_1113313013300028380Switchgrass RhizosphereMHTKRGRLTAMRAILPMALLCASTVGCSERARSVDRFYGIVNSPAADGKLVSIDVRNQNDVTITPIGTIGTFGCTSVALSREGTLYSICGPGNFADTQHQYGCMTPGPQQLATIDPKTGHAAMFG
(restricted) Ga0255310_1023454613300031197Sandy SoilMAVLCASTIGCSGSTARSVDRFYGIVNSPAADGKLVSIDVRDQNDVTITPIGAIGTFGCTSVALSSQGTLYSVCGPADFADTQHKYGCMT
Ga0310887_1068034823300031547SoilMQAKRRRLTAVRGILATAALCASTIGCSGRAARSVDRFYGIVNSPAADAKLVSIDVRDHNDVTIAPIGAIGTFGCTSVALSKQGTLYSICGPADFADTQHKYGCMTPGPQ
Ga0310887_1095798923300031547SoilMQTTHRRLTAARGILPMAVLCASTFGCSGRAARSVDRFYGIVNSPAADGKLVSIEVRDQNDVTITPIGAIGTYGCTSVALSSQGTLYSVCGPGDFADTQHKYACMTPGPQQL
Ga0310907_1007474413300031847SoilMQTTHRRLTAARGILPMAVLCASTFGCSGRAARSVDRFYGIVNSPAADGKLVSIEVRDQNDVTITPIGAIGTYGCTSVALSSQGTLYSVCGPGDFADTQHKYACMTPGPQQLATIDPRTGHAN
Ga0306925_1163017323300031890SoilMQTKRGRFTAVRAILPVAVLCASTMACSRSATRSVDRFYGIVNSPAPDGKLVSIDVRNPNDVTITPIGAVGVYGCTSVALSSQGTLYSICGPNDFADTQHKFFCMTPGPQQLA
Ga0307406_1170562823300031901RhizosphereMQTKRRRLTAVRGILPTAVLCASTIGCSGRAARSVDRFYGIVNSPAADGKLVSIDVRDQNDVTITPIGAIGTFGCTSVALSSQGTLYSVCGPADFADTQHKYGCM
Ga0310900_1090238713300031908SoilMQAKRRRLTAVRGILATAALCASTIGCSGRAARSVDRFYGIVNSPAADAKLVSIDVRDHNDVTIAPIGAIGTFGCTSVALSKQGTLYSICGPADFADTQHKY
Ga0310900_1153293913300031908SoilMSRQLLLSNIRAILSIAGLCAATISCSGNAPRSLDRLYGIVNSPAADGRLVSIDVRGQNDVTITAIGTLGTFGCTSVALSSEGTLYSICGPV
Ga0310891_1007762213300031913SoilMQTTHRRLTAARGILPMAVLCASTFGCSGRAARSVDRFYGIVNSPAADGKLVSIEVRDQNDVTITPIGAIGTYGCTSVALSSQGTLYSVCGPGDFA
Ga0310901_1033162013300031940SoilMQTTRGRFTAVRGIAPLAVLCATVGCSGNTARSVDRFYGIVNSPAADGKLVAIDVRDRADVTITPIGTIGIFGCTSVALSKEGTLYSVCGPGNFVDTQHQYGCMTPGPQQLAT
Ga0310909_1093658113300031947SoilMQTRRARLTAVRGIPLVALLCASTLGCSGRATRGVDRFYGIVNSPAADGKLVSIDVRGPNDVTITPIGTIGAFGCTSVALSSQGTLYSVCGPSDFVDKKHQ
Ga0318562_1066885013300032008SoilMQTTRGRLTRVRGILLVATLCASTIGCSGHGARGVDRFYGIVNSPAADGKLVAIDVRDQNDVTITPIGAIGTFGCTSVALSKEGTLYSVCGPSNFT
Ga0310902_1060293123300032012SoilMQTTRGRFTAVRGIAPLAVLCATVGCSGNTARSVDRFYGIVNSPAADGKLVAIDVRDRADVTITPIGTIGIFGCTSVALSKEGTLYSVCGPGNFVDTQHQYGCMTPGPQQLATIDPKTGRAT
Ga0310899_1028272023300032017SoilMQTTHRRLTAARGILPMAVLCASTFGCSGRAARSVDRFYGIVNSPAADGKLVSIEVRDQNDVTITPIGAIGTYGCTSVALSSQGTLYSVCGPGDFADTQH
Ga0310890_1109587513300032075SoilMQTTHRRLTAARGILPMAVLCASTFGCSGRAARSVDRFYGIVNSPAADGKLVSIEVRDQNDVTITPIGAIGTYGCTSVALSSQGTLYSVCGPGDFADTQHKYACMTPGPQQLATIDPRTG
Ga0310890_1127272223300032075SoilMQTTRGRFTAVRCILPMAVLCASTVGCSGKARSVDRFYGIVNSPAADGKLVAIDVRDQNEVTITPIGTIGTFGCTSVALSKEGTLYSVCGPGNFTD
Ga0306924_1175162113300032076SoilMQTKRGRLTEVRGILLVAMLCASTVGCSGRGARGVDRFYGIVKSPAADAKLVAIDVRDQNDVTITPIGAIGTFGCTSVALSREGTLYSVCGPGSFADTQHTSGCMTPGPQ
Ga0310889_1031298413300032179SoilMQTTHRRLTAARGILPMAVLCASTFGCSGRAARSVDRFYGIVNSPAADGKLVSIEVRDQNDVTITPIGAIGTYGCTSVALSSQGTLYSVCGPGDFADTQHKYACMTPGPQQLATIDP
Ga0310812_1054716413300032421SoilMQTERGRLTAVRRILPMAVLCASTIGCSGRVARSVDRFYGIVNSPAADGKLVSIDVRDQNDVTITPIGAIGTYGCASVALSKDGTLYSVCGPNDFADTQHKYGC
Ga0310810_1021543833300033412SoilMQTTRGRFTAVRCILPMAVLCASTVGCSGKARSVDRFYGIVNSPAADGKLVAIDVRDQNEVTITPIGTIGTFGCTSVALSKEGTLYSVCGPSNFTDTEHKYGCMTPGPQQLATIDPKT
Ga0310810_1035160723300033412SoilMRTKRARLTAARAALSLAVLCASTVACSRSAARSVDRFYGIVNSPAADGKLVSIDVRDQNDVTITPIGTIGTFGCTSVALSSQGTLYSVCGPNDFADTQHKYGCMTPGPQQLATI
Ga0310810_1089065713300033412SoilMQTTHRRLTAARGILPMAVLCASTFGCSGRAARSVDRFYGIVNSPAADGKLVSIEVRDQNDVTITPIGAIGTYGCTSVALSSQGTLYSVCGPGDFAD
Ga0314803_116808_3_3383300034678SoilVRFISQKEQQMQAKRRRLTAVRGILATAALCDSTIGCSGRAARSVDRFYGIVNSPAADGKLVSIEVRDQNDVTITPIGAIGTYGCTSVALSGQGTLYSVCGPNNFADTQHKY
Ga0373948_0096769_409_6903300034817Rhizosphere SoilMAMLCVSTLACSGKAGRSVDRFYGIVNNPAADGKLVAIDVRDQNDVTITPIGAIGTYGCASVALSKDGTLYSVCGPNDFADTQHKYGCMTPGPQ

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.