NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F105711

Metagenome / Metatranscriptome Family F105711

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F105711
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 37 residues
Representative Sequence RADELIERSKDVAVRKKDSISAAVEAGREAYLRESKS
Number of Associated Samples 88
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 3.00 %
% of genes near scaffold ends (potentially truncated) 96.00 %
% of genes from short scaffolds (< 2000 bps) 90.00 %
Associated GOLD sequencing projects 84
AlphaFold2 3D model prediction Yes
3D model pTM-score0.56

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (100.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(23.000 % of family members)
Environment Ontology (ENVO) Unclassified
(24.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(57.000 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 53.85%    β-sheet: 0.00%    Coil/Unstructured: 46.15%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.56
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF06103DUF948 45.00
PF03054tRNA_Me_trans 18.00
PF00266Aminotran_5 4.00
PF00023Ank 1.00
PF01566Nramp 1.00
PF12732YtxH 1.00
PF09837DUF2064 1.00
PF12704MacB_PCD 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG4768Uncharacterized conserved protein YoxC, contains an MCP-like domainFunction unknown [S] 45.00
COG0482tRNA U34 2-thiouridine synthase MnmA/TrmU, contains the PP-loop ATPase domainTranslation, ribosomal structure and biogenesis [J] 18.00
COG1914Mn2+ or Fe2+ transporter, NRAMP familyInorganic ion transport and metabolism [P] 1.00

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms100.00 %
UnclassifiedrootN/A0.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000955|JGI1027J12803_105286307All Organisms → cellular organisms → Bacteria → Acidobacteria683Open in IMG/M
3300001167|JGI12673J13574_1011917All Organisms → cellular organisms → Bacteria → Acidobacteria521Open in IMG/M
3300002245|JGIcombinedJ26739_100156888All Organisms → cellular organisms → Bacteria → Acidobacteria2151Open in IMG/M
3300002245|JGIcombinedJ26739_100588563All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae989Open in IMG/M
3300005541|Ga0070733_10140797All Organisms → cellular organisms → Bacteria → Acidobacteria1561Open in IMG/M
3300005542|Ga0070732_10871932All Organisms → cellular organisms → Bacteria → Acidobacteria550Open in IMG/M
3300005591|Ga0070761_11046597All Organisms → cellular organisms → Bacteria → Acidobacteria519Open in IMG/M
3300005602|Ga0070762_10018806All Organisms → cellular organisms → Bacteria → Acidobacteria3580Open in IMG/M
3300005921|Ga0070766_11071903All Organisms → cellular organisms → Bacteria → Acidobacteria556Open in IMG/M
3300006052|Ga0075029_100369460All Organisms → cellular organisms → Bacteria → Acidobacteria927Open in IMG/M
3300006052|Ga0075029_100478917All Organisms → cellular organisms → Bacteria → Acidobacteria819Open in IMG/M
3300006173|Ga0070716_101156025All Organisms → cellular organisms → Bacteria → Acidobacteria620Open in IMG/M
3300006176|Ga0070765_100398933All Organisms → cellular organisms → Bacteria → Acidobacteria1284Open in IMG/M
3300006797|Ga0066659_10322959All Organisms → cellular organisms → Bacteria → Acidobacteria1186Open in IMG/M
3300006800|Ga0066660_10256347All Organisms → cellular organisms → Bacteria1371Open in IMG/M
3300007265|Ga0099794_10420114All Organisms → cellular organisms → Bacteria → Acidobacteria699Open in IMG/M
3300007788|Ga0099795_10463420All Organisms → cellular organisms → Bacteria → Acidobacteria585Open in IMG/M
3300009038|Ga0099829_11092066All Organisms → cellular organisms → Bacteria → Acidobacteria661Open in IMG/M
3300009088|Ga0099830_10065253All Organisms → cellular organisms → Bacteria2620Open in IMG/M
3300009137|Ga0066709_103146697All Organisms → cellular organisms → Bacteria → Acidobacteria603Open in IMG/M
3300009137|Ga0066709_103232802All Organisms → cellular organisms → Bacteria → Acidobacteria594Open in IMG/M
3300009631|Ga0116115_1056523All Organisms → cellular organisms → Bacteria → Acidobacteria1036Open in IMG/M
3300009665|Ga0116135_1378939All Organisms → cellular organisms → Bacteria → Acidobacteria571Open in IMG/M
3300010046|Ga0126384_10634888All Organisms → cellular organisms → Bacteria → Acidobacteria939Open in IMG/M
3300010046|Ga0126384_10973698All Organisms → cellular organisms → Bacteria → Acidobacteria771Open in IMG/M
3300010301|Ga0134070_10188983All Organisms → cellular organisms → Bacteria → Acidobacteria751Open in IMG/M
3300010379|Ga0136449_102606683All Organisms → cellular organisms → Bacteria → Acidobacteria721Open in IMG/M
3300011269|Ga0137392_10222064All Organisms → cellular organisms → Bacteria → Acidobacteria1550Open in IMG/M
3300012203|Ga0137399_10048091All Organisms → cellular organisms → Bacteria3079Open in IMG/M
3300012208|Ga0137376_11405475All Organisms → cellular organisms → Bacteria → Acidobacteria589Open in IMG/M
3300012351|Ga0137386_10197214All Organisms → cellular organisms → Bacteria → Acidobacteria1446Open in IMG/M
3300012362|Ga0137361_11934247All Organisms → cellular organisms → Bacteria → Acidobacteria506Open in IMG/M
3300012922|Ga0137394_10225176All Organisms → cellular organisms → Bacteria → Acidobacteria1603Open in IMG/M
3300012922|Ga0137394_10520304All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1010Open in IMG/M
3300012923|Ga0137359_10986198All Organisms → cellular organisms → Bacteria → Acidobacteria724Open in IMG/M
3300012923|Ga0137359_11227392All Organisms → cellular organisms → Bacteria → Acidobacteria638Open in IMG/M
3300012923|Ga0137359_11559670All Organisms → cellular organisms → Bacteria → Acidobacteria548Open in IMG/M
3300012925|Ga0137419_11050506All Organisms → cellular organisms → Bacteria → Acidobacteria677Open in IMG/M
3300012929|Ga0137404_10705092All Organisms → cellular organisms → Bacteria → Acidobacteria913Open in IMG/M
3300012931|Ga0153915_12018297All Organisms → cellular organisms → Bacteria → Acidobacteria675Open in IMG/M
3300012971|Ga0126369_12326119All Organisms → cellular organisms → Bacteria → Acidobacteria622Open in IMG/M
3300012977|Ga0134087_10562964All Organisms → cellular organisms → Bacteria → Acidobacteria584Open in IMG/M
3300015241|Ga0137418_10242058All Organisms → cellular organisms → Bacteria → Acidobacteria1536Open in IMG/M
3300016270|Ga0182036_10315420All Organisms → cellular organisms → Bacteria → Acidobacteria1194Open in IMG/M
3300016294|Ga0182041_11962358All Organisms → cellular organisms → Bacteria → Acidobacteria544Open in IMG/M
3300017654|Ga0134069_1129440All Organisms → cellular organisms → Bacteria → Acidobacteria835Open in IMG/M
3300017942|Ga0187808_10611943All Organisms → cellular organisms → Bacteria → Acidobacteria506Open in IMG/M
3300017961|Ga0187778_10630410All Organisms → cellular organisms → Bacteria → Acidobacteria721Open in IMG/M
3300017999|Ga0187767_10214068All Organisms → cellular organisms → Bacteria → Acidobacteria616Open in IMG/M
3300018060|Ga0187765_10125820All Organisms → cellular organisms → Bacteria → Acidobacteria1424Open in IMG/M
3300018088|Ga0187771_11591527All Organisms → cellular organisms → Bacteria → Acidobacteria555Open in IMG/M
3300018090|Ga0187770_10021296All Organisms → cellular organisms → Bacteria → Acidobacteria4400Open in IMG/M
3300018468|Ga0066662_11959398All Organisms → cellular organisms → Bacteria → Acidobacteria613Open in IMG/M
3300020170|Ga0179594_10063008All Organisms → cellular organisms → Bacteria → Acidobacteria1277Open in IMG/M
3300020579|Ga0210407_11292959All Organisms → cellular organisms → Bacteria → Acidobacteria545Open in IMG/M
3300020580|Ga0210403_10407738All Organisms → cellular organisms → Bacteria → Acidobacteria1109Open in IMG/M
3300021168|Ga0210406_10026239All Organisms → cellular organisms → Bacteria → Acidobacteria5330Open in IMG/M
3300021178|Ga0210408_10950312All Organisms → cellular organisms → Bacteria → Acidobacteria667Open in IMG/M
3300021402|Ga0210385_10274980All Organisms → cellular organisms → Bacteria → Acidobacteria1243Open in IMG/M
3300021402|Ga0210385_10561563All Organisms → cellular organisms → Bacteria → Acidobacteria869Open in IMG/M
3300021407|Ga0210383_10323426All Organisms → cellular organisms → Bacteria → Acidobacteria1328Open in IMG/M
3300021407|Ga0210383_10865748All Organisms → cellular organisms → Bacteria → Acidobacteria771Open in IMG/M
3300021420|Ga0210394_11693417All Organisms → cellular organisms → Bacteria → Acidobacteria530Open in IMG/M
3300021478|Ga0210402_11206458All Organisms → cellular organisms → Bacteria → Acidobacteria684Open in IMG/M
3300021559|Ga0210409_11284047All Organisms → cellular organisms → Bacteria → Acidobacteria608Open in IMG/M
3300021559|Ga0210409_11301065All Organisms → cellular organisms → Bacteria → Acidobacteria603Open in IMG/M
3300021559|Ga0210409_11529656All Organisms → cellular organisms → Bacteria → Acidobacteria543Open in IMG/M
3300022509|Ga0242649_1070047All Organisms → cellular organisms → Bacteria → Acidobacteria525Open in IMG/M
3300022525|Ga0242656_1039787All Organisms → cellular organisms → Bacteria → Acidobacteria784Open in IMG/M
3300022532|Ga0242655_10204959All Organisms → cellular organisms → Bacteria → Acidobacteria605Open in IMG/M
3300022533|Ga0242662_10099645All Organisms → cellular organisms → Bacteria → Acidobacteria827Open in IMG/M
3300026297|Ga0209237_1144904All Organisms → cellular organisms → Bacteria → Acidobacteria937Open in IMG/M
3300026304|Ga0209240_1044458All Organisms → cellular organisms → Bacteria → Acidobacteria1681Open in IMG/M
3300026312|Ga0209153_1177456All Organisms → cellular organisms → Bacteria → Acidobacteria767Open in IMG/M
3300026334|Ga0209377_1314051All Organisms → cellular organisms → Bacteria → Acidobacteria523Open in IMG/M
3300026342|Ga0209057_1035815All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2534Open in IMG/M
3300027537|Ga0209419_1087566All Organisms → cellular organisms → Bacteria → Acidobacteria617Open in IMG/M
3300027605|Ga0209329_1095598All Organisms → cellular organisms → Bacteria → Acidobacteria649Open in IMG/M
3300027655|Ga0209388_1065564All Organisms → cellular organisms → Bacteria → Acidobacteria1047Open in IMG/M
3300027768|Ga0209772_10067457All Organisms → cellular organisms → Bacteria → Acidobacteria1077Open in IMG/M
3300027842|Ga0209580_10602061All Organisms → cellular organisms → Bacteria → Acidobacteria545Open in IMG/M
3300027862|Ga0209701_10720945All Organisms → cellular organisms → Bacteria → Acidobacteria511Open in IMG/M
3300027898|Ga0209067_10746089All Organisms → cellular organisms → Bacteria → Acidobacteria569Open in IMG/M
3300030738|Ga0265462_11109812All Organisms → cellular organisms → Bacteria → Acidobacteria695Open in IMG/M
3300031231|Ga0170824_117528019All Organisms → cellular organisms → Bacteria → Acidobacteria1283Open in IMG/M
3300031236|Ga0302324_100582888All Organisms → cellular organisms → Bacteria → Acidobacteria1609Open in IMG/M
3300031474|Ga0170818_105593544All Organisms → cellular organisms → Bacteria → Acidobacteria825Open in IMG/M
3300031544|Ga0318534_10633626All Organisms → cellular organisms → Bacteria → Acidobacteria606Open in IMG/M
3300031668|Ga0318542_10320831All Organisms → cellular organisms → Bacteria → Acidobacteria794Open in IMG/M
3300031719|Ga0306917_10010229All Organisms → cellular organisms → Bacteria → Acidobacteria5365Open in IMG/M
3300031720|Ga0307469_10908641All Organisms → cellular organisms → Bacteria → Acidobacteria816Open in IMG/M
3300031753|Ga0307477_10615341All Organisms → cellular organisms → Bacteria → Acidobacteria731Open in IMG/M
3300031799|Ga0318565_10095271All Organisms → cellular organisms → Bacteria → Acidobacteria1425Open in IMG/M
3300031821|Ga0318567_10320239All Organisms → cellular organisms → Bacteria → Acidobacteria875Open in IMG/M
3300031959|Ga0318530_10324407All Organisms → cellular organisms → Bacteria → Acidobacteria637Open in IMG/M
3300032205|Ga0307472_101622139All Organisms → cellular organisms → Bacteria → Acidobacteria636Open in IMG/M
3300032261|Ga0306920_102473993All Organisms → cellular organisms → Bacteria → Acidobacteria715Open in IMG/M
3300033158|Ga0335077_10227709All Organisms → cellular organisms → Bacteria → Acidobacteria2078Open in IMG/M
3300033158|Ga0335077_10813833All Organisms → cellular organisms → Bacteria → Acidobacteria950Open in IMG/M
3300033402|Ga0326728_10023208All Organisms → cellular organisms → Bacteria11400Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil23.00%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil20.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil6.00%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil5.00%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland5.00%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil5.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil4.00%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil4.00%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds3.00%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil3.00%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil3.00%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil3.00%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil3.00%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland2.00%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil2.00%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil2.00%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil1.00%
Freshwater WetlandsEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands1.00%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment1.00%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil1.00%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere1.00%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa1.00%
Peat SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil1.00%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000955Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300001167Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2EnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300005541Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1EnvironmentalOpen in IMG/M
3300005542Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1EnvironmentalOpen in IMG/M
3300005591Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1EnvironmentalOpen in IMG/M
3300005602Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2EnvironmentalOpen in IMG/M
3300005921Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6EnvironmentalOpen in IMG/M
3300006052Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013EnvironmentalOpen in IMG/M
3300006173Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaGEnvironmentalOpen in IMG/M
3300006176Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5EnvironmentalOpen in IMG/M
3300006797Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108EnvironmentalOpen in IMG/M
3300006800Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109EnvironmentalOpen in IMG/M
3300007265Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1EnvironmentalOpen in IMG/M
3300007788Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009631Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_100EnvironmentalOpen in IMG/M
3300009665Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10EnvironmentalOpen in IMG/M
3300010046Tropical forest soil microbial communities from Panama - MetaG Plot_36EnvironmentalOpen in IMG/M
3300010301Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015EnvironmentalOpen in IMG/M
3300010379Sb_50d combined assemblyEnvironmentalOpen in IMG/M
3300011269Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaGEnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012208Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012351Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012362Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaGEnvironmentalOpen in IMG/M
3300012922Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaGEnvironmentalOpen in IMG/M
3300012923Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaGEnvironmentalOpen in IMG/M
3300012925Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012931Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaGEnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300012977Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300015241Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300016270Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080EnvironmentalOpen in IMG/M
3300016294Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178EnvironmentalOpen in IMG/M
3300017654Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300017942Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3EnvironmentalOpen in IMG/M
3300017961Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MGEnvironmentalOpen in IMG/M
3300017999Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_10_MGEnvironmentalOpen in IMG/M
3300018060Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MGEnvironmentalOpen in IMG/M
3300018088Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MGEnvironmentalOpen in IMG/M
3300018090Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300018468Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111EnvironmentalOpen in IMG/M
3300020170Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300020579Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-MEnvironmentalOpen in IMG/M
3300020580Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-MEnvironmentalOpen in IMG/M
3300021168Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-MEnvironmentalOpen in IMG/M
3300021178Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-MEnvironmentalOpen in IMG/M
3300021402Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-OEnvironmentalOpen in IMG/M
3300021407Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-OEnvironmentalOpen in IMG/M
3300021420Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-MEnvironmentalOpen in IMG/M
3300021478Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-MEnvironmentalOpen in IMG/M
3300021559Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-MEnvironmentalOpen in IMG/M
3300022509Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-27-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022525Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022532Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022533Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300026297Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026304Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)EnvironmentalOpen in IMG/M
3300026312Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes)EnvironmentalOpen in IMG/M
3300026334Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)EnvironmentalOpen in IMG/M
3300026342Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)EnvironmentalOpen in IMG/M
3300027537Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027605Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027655Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)EnvironmentalOpen in IMG/M
3300027768Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM1 (SPAdes)EnvironmentalOpen in IMG/M
3300027842Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027862Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027898Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)EnvironmentalOpen in IMG/M
3300030738Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VDE Co-assemblyEnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031236Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1EnvironmentalOpen in IMG/M
3300031474Fir Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031544Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26EnvironmentalOpen in IMG/M
3300031668Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23EnvironmentalOpen in IMG/M
3300031719Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)EnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031753Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515EnvironmentalOpen in IMG/M
3300031799Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21EnvironmentalOpen in IMG/M
3300031821Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20EnvironmentalOpen in IMG/M
3300031959Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M
3300033158Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1EnvironmentalOpen in IMG/M
3300033402Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MNEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI1027J12803_10528630723300000955SoilRADELIERGKDVATRKRDSLTAAVEAGREAFLRESKS*
JGI12673J13574_101191713300001167Forest SoilELIERSKDVASRKKDSISAAVDAGREAYLREASKS*
JGIcombinedJ26739_10015688843300002245Forest SoilADELIERSKEVAGRKRDSISAAVEAGREAFLRESKS*
JGIcombinedJ26739_10058856333300002245Forest SoilRADELVERSKDVASRKKDSIAAAVEAGREAYLRESKA*
Ga0070733_1014079713300005541Surface SoilLIERGKEVAGRQKESISAAVEGAREAYRREAAKS*
Ga0070732_1087193223300005542Surface SoilDDLIERGKEVAGRQKESISAAVEGAREAYRREAAKS*
Ga0070761_1104659713300005591SoilLRERADELVERGKDVAKGKRDSLSAAVEAGREAYLRESKS*
Ga0070762_1001880613300005602SoilLIERSKDAATRGKDSISAAVEGAREAYRREASKS*
Ga0070766_1107190313300005921SoilELVERSKDVASRKKDSIAAAVEAGREAYLRESKA*
Ga0075029_10036946033300006052WatershedsLRERADELIERGKDVASRKRESLSAAVEAGREAFLRESKS*
Ga0075029_10047891723300006052WatershedsRERAEELIERGKDVAVRQKDSISAAVEGAREAYRREAKS*
Ga0070716_10115602513300006173Corn, Switchgrass And Miscanthus RhizosphereERADDLVERGKDAASRHKETISAAVDGAREAYRREASKS*
Ga0070765_10039893333300006176SoilELRDRADELIERGKDVASRKRDSLSAAVEAGREAFLRESKS*
Ga0066659_1032295933300006797SoilLVERGKDAASRHKETITAAVDGAREAYRREASKS*
Ga0066660_1025634743300006800SoilELIERGKEVAVRKKDSISAAVEAGREAYLRESKQS*
Ga0099794_1042011423300007265Vadose Zone SoilERADELIERSKEVAVRKKDSISAAVEAGREAYLRESKS*
Ga0099795_1046342023300007788Vadose Zone SoilDELIERSKDVAVRKKDSISSAVEAGREAYLRESAKS*
Ga0099829_1109206623300009038Vadose Zone SoilELIERGKDVAGRKKDSISAAVEAGREAYLRESAKS*
Ga0099830_1006525343300009088Vadose Zone SoilLRERADELIERSKEIAVSKKDSISAAVEAGREAYLRQSKS*
Ga0066709_10314669723300009137Grasslands SoilLIERSKEIAVSKKDSISAAVEAGREAYLRQSKSS*
Ga0066709_10323280213300009137Grasslands SoilRADELIERSKDVAVRKKDSLSAAVEAGREAYLRESKA*
Ga0116115_105652333300009631PeatlandDLIERGKDVAARKRDSIAAAVDAGREAFLRETKS*
Ga0116135_137893913300009665PeatlandLRERADELVERSKDVANRKKDSIAAAVEAGREAYLRESKA*
Ga0126384_1063488813300010046Tropical Forest SoilRADDLIERGKDAASRHKETISAAVEGARDAYRREAAKS*
Ga0126384_1097369813300010046Tropical Forest SoilRADELIERGKDVAVRKRDSISAAVDAGREAFLRESKS*
Ga0134070_1018898333300010301Grasslands SoilLIERGKEAAAREKDSLGAAVEAGREAYERHKAKAQ*
Ga0136449_10260668313300010379Peatlands SoilDELIERGKDVATRKRDSLTAAVEAGREAFLRESKS*
Ga0137392_1022206423300011269Vadose Zone SoilMRGRADELIERSKEIAGNKKDSITAAVEAGREAYLRQSKS*
Ga0137399_1004809143300012203Vadose Zone SoilADELIERSKEVAVRKKDSISAAVEAGREAYLRESKS*
Ga0137376_1140547513300012208Vadose Zone SoilADELIERGKEVAIRQKDSISAAVEGAQEAYRKAAKS*
Ga0137386_1019721413300012351Vadose Zone SoilDELIERGKDVASKQKESISAAVEGAREAYRREAGKA*
Ga0137361_1193424723300012362Vadose Zone SoilADDLVERGKDAASRHKETITAAVEGARDAYRREASKS*
Ga0137394_1022517613300012922Vadose Zone SoilRADELIERSKEVAVRKKDSISAAVEAGREAYLRESKS*
Ga0137394_1052030413300012922Vadose Zone SoilADELIERSKDVAVRKKDSISAAVEAGREAYLRESKS*
Ga0137359_1098619823300012923Vadose Zone SoilLRERADELIERGKDVASKKRESLSAAVDAGREAFLRESKS*
Ga0137359_1122739223300012923Vadose Zone SoilADELIERSKDVAVRKKDSISSAVEAGREAYLRESAKS*
Ga0137359_1155967013300012923Vadose Zone SoilRADELIERSKEIAVSKKDSITAAVEAGREAYLRQSKS*
Ga0137419_1105050623300012925Vadose Zone SoilERADELIERSKEVAGRKKDSISAAVEAGREAYLRESKS*
Ga0137404_1070509213300012929Vadose Zone SoilLRERADELIERGKDVASRQKESISAAVEGAREAYRREAGKA*
Ga0153915_1201829713300012931Freshwater WetlandsRADDLLERGKEVASRQKESLSAAVEAGREAYQREKSKS*
Ga0126369_1232611913300012971Tropical Forest SoilDRADELIERGKDVASRQKESISAAVEGAREAYRREAAKG*
Ga0134087_1056296413300012977Grasslands SoilDELIERSKEVAVRKKDSISAAVEAGREAYLREAKS*
Ga0137418_1024205833300015241Vadose Zone SoilLRERADELVERGKEVAVRKKDSISAAVEAGREAYLRESKS*
Ga0182036_1031542033300016270SoilDELIERGKDVATRKRDSLTAAVEAGREAFLRESKS
Ga0182041_1196235823300016294SoilADDLIERGKEAANRHKDTISAALDGARDAYRREATKS
Ga0134069_112944033300017654Grasslands SoilRERADELIERGKDVASKQKESISAAVEGAREAYRREAGKA
Ga0187808_1061194313300017942Freshwater SedimentDDLIERGKDIATRKRDSLSAAVEAGREAFLRESKS
Ga0187778_1063041023300017961Tropical PeatlandLRDRADELIERGKDVAARKRDSIAAAVDAGREAFLRETKS
Ga0187767_1021406823300017999Tropical PeatlandRADELIERGKDVASRKRESLSAAVEAGREAFLRESKS
Ga0187765_1012582033300018060Tropical PeatlandDRADELIERGKDVASRKRESLSAAVEAGREAFLRESKS
Ga0187771_1159152723300018088Tropical PeatlandDRADELIERGKDAATRKRDSLSAAVEAGREAFLRESKS
Ga0187770_1002129613300018090Tropical PeatlandDELIERGKDAATRKRDSLSAAVEAGREAFLRESKS
Ga0066662_1195939823300018468Grasslands SoilELIERSKEIAVSKKDSISAAVEAGREAYLRQSKSS
Ga0179594_1006300813300020170Vadose Zone SoilRADELIERSKDVAVRKKDSISAAVEAGREAYLRESKS
Ga0210407_1129295923300020579SoilELIERSKDVASRKKDSISAAVDAGREAYLREASKS
Ga0210403_1040773813300020580SoilRERADELIERGKDVASKKRESLSAAVDAGREAFLRESKS
Ga0210406_1002623973300021168SoilDDLIERSKDAATRGKDSISAAVEGAREAYRREASKS
Ga0210408_1095031213300021178SoilRADELIERGKDVASRKRESLSAAVDAGREAFLRESKS
Ga0210385_1027498033300021402SoilLRERADELVERGKDVAKGKRDSISAAVEAGREAYLRESKS
Ga0210385_1056156313300021402SoilYLIERSKDAATRGKDSISAAVEGAREAYRREASKS
Ga0210383_1032342633300021407SoilRADDLIERSKDAATRGKDSISAAVEGAREAYRREASKS
Ga0210383_1086574813300021407SoilADELIERGKDVASRKKESISAAVDAGREAYLREATARPERS
Ga0210394_1169341713300021420SoilERADELVERGKEVAVRKKDSISAAVEAGREAYLRESKS
Ga0210402_1120645813300021478SoilADELIERSKEVATRQKDSISAAVEGAREAYRREAKA
Ga0210409_1128404723300021559SoilERADDLIERSKDAATRGKDSISAAVEGAREAYRREASKS
Ga0210409_1130106513300021559SoilERADELIERGKDVASKKRESLSAAVDAGREAFLRESKS
Ga0210409_1152965623300021559SoilERGERADELIERSKEVAVRKKDSISAAVEAGREAYLRESKS
Ga0242649_107004713300022509SoilDELIERGKDVASRKKESISAAVDAGREAYLREASARPERS
Ga0242656_103978723300022525SoilDELIERSKDVAVRKKDSIAAAVDAGREAYLRESKS
Ga0242655_1020495923300022532SoilRERADELIERSKEVAVRKKDSISAAVEAGREAYLRESKS
Ga0242662_1009964513300022533SoilDELIERGKDVASRKRESLSAAVDAGREAFLRESKS
Ga0209237_114490423300026297Grasslands SoilADELIERSKEIAVNKKDSITAAVEAGREAYLRQSKS
Ga0209240_104445833300026304Grasslands SoilRADELIERSKDVAVRKKDSIAAAVDAGREAYLRESKS
Ga0209153_117745623300026312SoilLRERADELIERGKEVATRQKDSVSAAVEAGREAYLRHSKQTS
Ga0209377_131405123300026334SoilRERADELIERSKEIAVSKKDSISAAVEAGREAYLRQSKSS
Ga0209057_103581543300026342SoilRERADELIERGKDVAVRKKDSISAAVEAGREAYLRESKQS
Ga0209419_108756613300027537Forest SoilELIERGKDVAGRKKDSISAAVEAGREAYLRESAKS
Ga0209329_109559823300027605Forest SoilDELIERGKDVASKKRESLSAAVDAGREAFLRESKS
Ga0209388_106556413300027655Vadose Zone SoilADELIERSKDVAVRKKDSIAAAVDAGREAYLRESKS
Ga0209772_1006745713300027768Bog Forest SoilDLIERGKDVAARKKESISAAVDAGREAYLREASGRADRS
Ga0209580_1060206123300027842Surface SoilDLIERGKEVAGRQKESISAAVEGAREAYRREAAKS
Ga0209701_1072094513300027862Vadose Zone SoilERADELIERSKEIAVNKKDSITAAVEAGREAYLRQSKS
Ga0209067_1074608923300027898WatershedsRADDLLEKGKEVASRKRESLTAAVEAGRDAFLRESKS
Ga0265462_1110981223300030738SoilRERADELVERSKDVANRKKDSIAAAVEAGREAYLRESKA
Ga0170824_11752801933300031231Forest SoilERADDLVERGKDAASRHKETITAAVEGARDAYRREASKS
Ga0302324_10058288813300031236PalsaLIERGKDVAARKKESISAAVDAGREAYLREASGRAERS
Ga0170818_10559354423300031474Forest SoilDDLVERGKDAASRHKETISAAVEGARDAYRREASKS
Ga0318534_1063362613300031544SoilKELRDRADDLVERGKDLASKKRESIAAAVDSAREAYLRESKS
Ga0318542_1032083123300031668SoilELRDRADDLVERGKDLASKKRESIAAAVDSAREAYLRESKS
Ga0306917_1001022913300031719SoilELIERGKEVAVRKKDSISAAVEAGREAYLRESKQS
Ga0307469_1090864123300031720Hardwood Forest SoilDDLVERGKDAASRHKETITAAVEGARDAYRREASKS
Ga0307477_1061534123300031753Hardwood Forest SoilDELIERGKEVAVRHKDSISAAVEGAREAYRREAKS
Ga0318565_1009527133300031799SoilLRDRADDLVERGKDLASKKRESIAAAVDSAREAYLRESKS
Ga0318567_1032023923300031821SoilDDLIERGKDVAARKRESLTAAVEAGREAFLRESKS
Ga0318530_1032440723300031959SoilRADDLVERGKDLASKKRESIAAAVDSAREAYLRESKS
Ga0307472_10162213913300032205Hardwood Forest SoilERADELIERSKDVAVRKKDSISAAVEAGREAYLRESKS
Ga0306920_10247399323300032261SoilKARELRDRADELIERGKDAASRKRDSLSAAVEAGREAFLRETKS
Ga0335077_1022770913300033158SoilERADELIERGKDVATRKRDSLTAAVEAGREAFLRESKS
Ga0335077_1081383333300033158SoilADDLIERGKDLATRKRDSLSAAVEAGREAFLRESKS
Ga0326728_1002320813300033402Peat SoilDDLIERGKDVAARKRDSIAAAVDAGREAFLRETKS

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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