NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F105709

Metagenome / Metatranscriptome Family F105709

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F105709
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 39 residues
Representative Sequence MQFGLSESQEFLKDSARKFFAGECPAAEVRRLMETE
Number of Associated Samples 88
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 98.00 %
% of genes near scaffold ends (potentially truncated) 100.00 %
% of genes from short scaffolds (< 2000 bps) 88.00 %
Associated GOLD sequencing projects 85
AlphaFold2 3D model prediction Yes
3D model pTM-score0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (100.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(27.000 % of family members)
Environment Ontology (ENVO) Unclassified
(31.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(56.000 % of family members)


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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 37.50%    β-sheet: 0.00%    Coil/Unstructured: 62.50%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.38
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF00441Acyl-CoA_dh_1 45.00
PF02771Acyl-CoA_dh_N 29.00
PF02770Acyl-CoA_dh_M 10.00
PF13193AMP-binding_C 4.00
PF09413DUF2007 3.00
PF00719Pyrophosphatase 1.00
PF02190LON_substr_bdg 1.00
PF13561adh_short_C2 1.00
PF01566Nramp 1.00
PF11306DUF3108 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG1960Acyl-CoA dehydrogenase related to the alkylation response protein AidBLipid transport and metabolism [I] 84.00
COG0221Inorganic pyrophosphataseEnergy production and conversion [C] 1.00
COG1914Mn2+ or Fe2+ transporter, NRAMP familyInorganic ion transport and metabolism [P] 1.00

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms100.00 %
UnclassifiedrootN/A0.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2170459003|FZ032L002JPWHUAll Organisms → cellular organisms → Bacteria500Open in IMG/M
3300001084|JGI12648J13191_1024927All Organisms → cellular organisms → Bacteria583Open in IMG/M
3300001175|JGI12649J13570_1003678All Organisms → cellular organisms → Bacteria2157Open in IMG/M
3300001471|JGI12712J15308_10129221All Organisms → cellular organisms → Bacteria647Open in IMG/M
3300005332|Ga0066388_103332410All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter821Open in IMG/M
3300005526|Ga0073909_10664482All Organisms → cellular organisms → Bacteria520Open in IMG/M
3300005531|Ga0070738_10139397All Organisms → cellular organisms → Bacteria1205Open in IMG/M
3300005764|Ga0066903_105698935All Organisms → cellular organisms → Bacteria655Open in IMG/M
3300005921|Ga0070766_10556919All Organisms → cellular organisms → Bacteria767Open in IMG/M
3300005921|Ga0070766_10898665All Organisms → cellular organisms → Bacteria606Open in IMG/M
3300006059|Ga0075017_101467273All Organisms → cellular organisms → Bacteria537Open in IMG/M
3300006173|Ga0070716_101190362All Organisms → cellular organisms → Bacteria → Proteobacteria611Open in IMG/M
3300006176|Ga0070765_100157145All Organisms → cellular organisms → Bacteria2034Open in IMG/M
3300009661|Ga0105858_1030875All Organisms → cellular organisms → Bacteria1368Open in IMG/M
3300010048|Ga0126373_10932957All Organisms → cellular organisms → Bacteria932Open in IMG/M
3300010373|Ga0134128_12206152All Organisms → cellular organisms → Bacteria → Acidobacteria607Open in IMG/M
3300010396|Ga0134126_12423153All Organisms → cellular organisms → Bacteria571Open in IMG/M
3300010397|Ga0134124_11808918All Organisms → cellular organisms → Bacteria → Acidobacteria645Open in IMG/M
3300011269|Ga0137392_10306826All Organisms → cellular organisms → Bacteria1312Open in IMG/M
3300011271|Ga0137393_11586393All Organisms → cellular organisms → Bacteria544Open in IMG/M
3300012202|Ga0137363_10741907All Organisms → cellular organisms → Bacteria832Open in IMG/M
3300012922|Ga0137394_10039696All Organisms → cellular organisms → Bacteria3856Open in IMG/M
3300012924|Ga0137413_10603643All Organisms → cellular organisms → Bacteria821Open in IMG/M
3300012924|Ga0137413_11509661All Organisms → cellular organisms → Bacteria546Open in IMG/M
3300012989|Ga0164305_10265000All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1250Open in IMG/M
3300013296|Ga0157374_12786295All Organisms → cellular organisms → Bacteria → Acidobacteria516Open in IMG/M
3300014156|Ga0181518_10465558All Organisms → cellular organisms → Bacteria602Open in IMG/M
3300015242|Ga0137412_10581089All Organisms → cellular organisms → Bacteria850Open in IMG/M
3300016404|Ga0182037_10998574All Organisms → cellular organisms → Bacteria → Acidobacteria729Open in IMG/M
3300017925|Ga0187856_1254107All Organisms → cellular organisms → Bacteria618Open in IMG/M
3300017961|Ga0187778_10229354All Organisms → cellular organisms → Bacteria1188Open in IMG/M
3300017975|Ga0187782_11151774All Organisms → cellular organisms → Bacteria606Open in IMG/M
3300017994|Ga0187822_10151050All Organisms → cellular organisms → Bacteria746Open in IMG/M
3300017995|Ga0187816_10117164All Organisms → cellular organisms → Bacteria1146Open in IMG/M
3300018016|Ga0187880_1145858All Organisms → cellular organisms → Bacteria1117Open in IMG/M
3300018085|Ga0187772_11202502All Organisms → cellular organisms → Bacteria558Open in IMG/M
3300020579|Ga0210407_10734713All Organisms → cellular organisms → Bacteria764Open in IMG/M
3300020582|Ga0210395_10369522All Organisms → cellular organisms → Bacteria1079Open in IMG/M
3300021170|Ga0210400_10114648All Organisms → cellular organisms → Bacteria2145Open in IMG/M
3300021170|Ga0210400_10842913All Organisms → cellular organisms → Bacteria → Acidobacteria750Open in IMG/M
3300021171|Ga0210405_10488043All Organisms → cellular organisms → Bacteria966Open in IMG/M
3300021171|Ga0210405_10990169All Organisms → cellular organisms → Bacteria634Open in IMG/M
3300021181|Ga0210388_10202959All Organisms → cellular organisms → Bacteria1735Open in IMG/M
3300021405|Ga0210387_10325336All Organisms → cellular organisms → Bacteria1355Open in IMG/M
3300021406|Ga0210386_10016272All Organisms → cellular organisms → Bacteria5803Open in IMG/M
3300021420|Ga0210394_10934866All Organisms → cellular organisms → Bacteria753Open in IMG/M
3300021420|Ga0210394_11663829All Organisms → cellular organisms → Bacteria535Open in IMG/M
3300021433|Ga0210391_10303618All Organisms → cellular organisms → Bacteria1252Open in IMG/M
3300021433|Ga0210391_10513615All Organisms → cellular organisms → Bacteria941Open in IMG/M
3300021474|Ga0210390_10121962All Organisms → cellular organisms → Bacteria → Proteobacteria2184Open in IMG/M
3300021475|Ga0210392_10931836All Organisms → cellular organisms → Bacteria650Open in IMG/M
3300021478|Ga0210402_10145461All Organisms → cellular organisms → Bacteria2157Open in IMG/M
3300021478|Ga0210402_11319149All Organisms → cellular organisms → Bacteria649Open in IMG/M
3300021479|Ga0210410_10570526All Organisms → cellular organisms → Bacteria1007Open in IMG/M
3300021559|Ga0210409_10143607All Organisms → cellular organisms → Bacteria2188Open in IMG/M
3300021559|Ga0210409_10172092All Organisms → cellular organisms → Bacteria1979Open in IMG/M
3300022722|Ga0242657_1000599All Organisms → cellular organisms → Bacteria3835Open in IMG/M
3300025915|Ga0207693_11171657All Organisms → cellular organisms → Bacteria581Open in IMG/M
3300025924|Ga0207694_11693077All Organisms → cellular organisms → Bacteria → Acidobacteria532Open in IMG/M
3300025934|Ga0207686_11238304All Organisms → cellular organisms → Bacteria611Open in IMG/M
3300025941|Ga0207711_10679310All Organisms → cellular organisms → Bacteria960Open in IMG/M
3300026334|Ga0209377_1106683All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis1152Open in IMG/M
3300026359|Ga0257163_1018710All Organisms → cellular organisms → Bacteria1070Open in IMG/M
3300026515|Ga0257158_1115937All Organisms → cellular organisms → Bacteria536Open in IMG/M
3300026552|Ga0209577_10804478All Organisms → cellular organisms → Bacteria526Open in IMG/M
3300026819|Ga0207765_106743All Organisms → cellular organisms → Bacteria989Open in IMG/M
3300027527|Ga0209684_1049191All Organisms → cellular organisms → Bacteria650Open in IMG/M
3300027562|Ga0209735_1024249All Organisms → cellular organisms → Bacteria1253Open in IMG/M
3300027660|Ga0209736_1036471All Organisms → cellular organisms → Bacteria1442Open in IMG/M
3300027703|Ga0207862_1068391All Organisms → cellular organisms → Bacteria1069Open in IMG/M
3300027875|Ga0209283_10146554All Organisms → cellular organisms → Bacteria1564Open in IMG/M
3300027875|Ga0209283_10646223All Organisms → cellular organisms → Bacteria666Open in IMG/M
3300027889|Ga0209380_10682218All Organisms → cellular organisms → Bacteria → Acidobacteria591Open in IMG/M
3300027911|Ga0209698_11403162All Organisms → cellular organisms → Bacteria509Open in IMG/M
3300028906|Ga0308309_11398247All Organisms → cellular organisms → Bacteria600Open in IMG/M
3300030053|Ga0302177_10026244All Organisms → cellular organisms → Bacteria3684Open in IMG/M
3300031128|Ga0170823_14967943All Organisms → cellular organisms → Bacteria609Open in IMG/M
3300031231|Ga0170824_117550822All Organisms → cellular organisms → Bacteria → Acidobacteria527Open in IMG/M
3300031234|Ga0302325_11075752All Organisms → cellular organisms → Bacteria1087Open in IMG/M
3300031538|Ga0310888_10390541All Organisms → cellular organisms → Bacteria815Open in IMG/M
3300031708|Ga0310686_101287935All Organisms → cellular organisms → Bacteria2971Open in IMG/M
3300031708|Ga0310686_101577561All Organisms → cellular organisms → Bacteria905Open in IMG/M
3300031715|Ga0307476_10195425All Organisms → cellular organisms → Bacteria1467Open in IMG/M
3300031715|Ga0307476_10241100All Organisms → cellular organisms → Bacteria1319Open in IMG/M
3300031718|Ga0307474_11502647All Organisms → cellular organisms → Bacteria530Open in IMG/M
3300031751|Ga0318494_10346578All Organisms → cellular organisms → Bacteria859Open in IMG/M
3300031833|Ga0310917_10100427All Organisms → cellular organisms → Bacteria1862Open in IMG/M
3300031939|Ga0308174_11313243All Organisms → cellular organisms → Bacteria618Open in IMG/M
3300031944|Ga0310884_10316179All Organisms → cellular organisms → Bacteria875Open in IMG/M
3300032059|Ga0318533_10346728All Organisms → cellular organisms → Bacteria1081Open in IMG/M
3300032076|Ga0306924_11339837All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae767Open in IMG/M
3300032091|Ga0318577_10015005All Organisms → cellular organisms → Bacteria3128Open in IMG/M
3300032180|Ga0307471_102207038All Organisms → cellular organisms → Bacteria693Open in IMG/M
3300032180|Ga0307471_102707201All Organisms → cellular organisms → Bacteria629Open in IMG/M
3300032805|Ga0335078_12436722All Organisms → cellular organisms → Bacteria542Open in IMG/M
3300032828|Ga0335080_11899746All Organisms → cellular organisms → Bacteria579Open in IMG/M
3300032829|Ga0335070_10528073All Organisms → cellular organisms → Bacteria1116Open in IMG/M
3300032892|Ga0335081_12238509All Organisms → cellular organisms → Bacteria574Open in IMG/M
3300033412|Ga0310810_10361499All Organisms → cellular organisms → Bacteria1521Open in IMG/M
3300033561|Ga0371490_1132114All Organisms → cellular organisms → Bacteria632Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil27.00%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil9.00%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil5.00%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil5.00%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil5.00%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil5.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil4.00%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil4.00%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil3.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil3.00%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland3.00%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland2.00%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment2.00%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds2.00%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil2.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil2.00%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil2.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil2.00%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere2.00%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa2.00%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog1.00%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil1.00%
Grass SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil1.00%
Permafrost SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil1.00%
Peat SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil1.00%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere1.00%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.00%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere1.00%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.00%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2170459003Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect MP BIO 1O1 lysis 0-21cmEnvironmentalOpen in IMG/M
3300001084Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1EnvironmentalOpen in IMG/M
3300001175Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3EnvironmentalOpen in IMG/M
3300001471Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2EnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005526Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1EnvironmentalOpen in IMG/M
3300005531Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen12_06102014_R2EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005921Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6EnvironmentalOpen in IMG/M
3300006059Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012EnvironmentalOpen in IMG/M
3300006173Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaGEnvironmentalOpen in IMG/M
3300006176Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5EnvironmentalOpen in IMG/M
3300009661Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-062EnvironmentalOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010373Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4EnvironmentalOpen in IMG/M
3300010396Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2EnvironmentalOpen in IMG/M
3300010397Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4EnvironmentalOpen in IMG/M
3300011269Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaGEnvironmentalOpen in IMG/M
3300011271Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaGEnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012922Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaGEnvironmentalOpen in IMG/M
3300012924Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012989Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MGEnvironmentalOpen in IMG/M
3300013296Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaGHost-AssociatedOpen in IMG/M
3300014156Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaGEnvironmentalOpen in IMG/M
3300015242Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300016404Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082EnvironmentalOpen in IMG/M
3300017925Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40EnvironmentalOpen in IMG/M
3300017961Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MGEnvironmentalOpen in IMG/M
3300017975Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300017994Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2EnvironmentalOpen in IMG/M
3300017995Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1EnvironmentalOpen in IMG/M
3300018016Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_40EnvironmentalOpen in IMG/M
3300018085Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300020579Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-MEnvironmentalOpen in IMG/M
3300020582Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-OEnvironmentalOpen in IMG/M
3300021170Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-MEnvironmentalOpen in IMG/M
3300021171Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-MEnvironmentalOpen in IMG/M
3300021181Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-OEnvironmentalOpen in IMG/M
3300021405Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-OEnvironmentalOpen in IMG/M
3300021406Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-OEnvironmentalOpen in IMG/M
3300021420Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-MEnvironmentalOpen in IMG/M
3300021433Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-OEnvironmentalOpen in IMG/M
3300021474Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-OEnvironmentalOpen in IMG/M
3300021475Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-OEnvironmentalOpen in IMG/M
3300021478Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-MEnvironmentalOpen in IMG/M
3300021479Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-MEnvironmentalOpen in IMG/M
3300021559Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-MEnvironmentalOpen in IMG/M
3300022722Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300025915Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025924Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025934Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025941Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026334Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)EnvironmentalOpen in IMG/M
3300026359Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-AEnvironmentalOpen in IMG/M
3300026515Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-AEnvironmentalOpen in IMG/M
3300026552Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)EnvironmentalOpen in IMG/M
3300026819Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 59 (SPAdes)EnvironmentalOpen in IMG/M
3300027527Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio (SPAdes)EnvironmentalOpen in IMG/M
3300027562Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027660Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027703Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes)EnvironmentalOpen in IMG/M
3300027875Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027889Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)EnvironmentalOpen in IMG/M
3300027911Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)EnvironmentalOpen in IMG/M
3300028906Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)EnvironmentalOpen in IMG/M
3300030053Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_2EnvironmentalOpen in IMG/M
3300031128Oak Summer Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031234Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2EnvironmentalOpen in IMG/M
3300031538Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031715Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05EnvironmentalOpen in IMG/M
3300031718Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05EnvironmentalOpen in IMG/M
3300031751Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24EnvironmentalOpen in IMG/M
3300031833Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178EnvironmentalOpen in IMG/M
3300031939Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2EnvironmentalOpen in IMG/M
3300031944Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1EnvironmentalOpen in IMG/M
3300032059Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27EnvironmentalOpen in IMG/M
3300032076Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)EnvironmentalOpen in IMG/M
3300032091Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032805Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2EnvironmentalOpen in IMG/M
3300032828Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4EnvironmentalOpen in IMG/M
3300032829Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3EnvironmentalOpen in IMG/M
3300032892Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5EnvironmentalOpen in IMG/M
3300033412Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NCEnvironmentalOpen in IMG/M
3300033561Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB28FN SIP fractionEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
E4A_024511602170459003Grass SoilMQFGLSESQRILQSNARKFFAAECPISEVRRIMETDTAQDARL
JGI12648J13191_102492723300001084Forest SoilMQFGXNESQXILKQNARQFFAGECPMQHVRHLAESKQPYDFA
JGI12649J13570_100367843300001175Forest SoilMQFGLSESQEFLKDSARKFFAGECPSAEMRRLMET
JGI12712J15308_1012922123300001471Forest SoilMQFGLSESQEFLKNSARKFFAGECPSAEMRRLMATETAYDA
Ga0066388_10333241013300005332Tropical Forest SoilMQFGLSESQQILKDTSRKFFSGECPVAEVRRLMETETAYNA
Ga0073909_1066448213300005526Surface SoilMQFGLSESQQILKDTARKFFAGESPIAAVRKAMET
Ga0070738_1013939713300005531Surface SoilMQFGLNESQKILQSNARKFFAAECSPADVRRIMETETAHDDKLWLH
Ga0066903_10569893513300005764Tropical Forest SoilMQFGLSESQQILKDTARKFFAGEIPIAAVRKAMETGTAYDA
Ga0070766_1055691923300005921SoilMQFGLSESQKMLKDNARKFFAGECPMEEVRRLMETDT
Ga0070766_1089866523300005921SoilMQFGLSESQEFLKDSARKFFAGECPSAEVRRLMDTD
Ga0075017_10146727323300006059WatershedsMEFGLSESQEFLKDSARKFFAGECPSAEMRRLMETDT
Ga0070716_10119036223300006173Corn, Switchgrass And Miscanthus RhizosphereMQFGLSESQQILKDTARKFFAGESPIAAVRKAMETGTAYD
Ga0070765_10015714513300006176SoilMQFGLNESQKILKENARQFFAGECPMTLVRQLAESKQPHDPS
Ga0105858_103087523300009661Permafrost SoilMQFGLSESQQILKDTAKKFFAGESAMADARKLMETETAYDAVLWRKL
Ga0126373_1093295713300010048Tropical Forest SoilMQFGLNESQEILKDGARKFFAGECPISEVRRLADTDTAFDASLWAK
Ga0134128_1220615223300010373Terrestrial SoilMQFGLSESQTILRDSAREFFAGECPMARVRRLADTDTAH
Ga0134126_1242315323300010396Terrestrial SoilMQFGLSESQQILKDTARKFFAGESPIATVRNAMETEAAYNVAL
Ga0134124_1180891823300010397Terrestrial SoilMQFGLSESQQILKDTAHKFFAGESPIAAVRKAMETETSYDAVLWTKLAEQ
Ga0137392_1030682623300011269Vadose Zone SoilMQFGLSESQQILKDTARKFFAGESPIAAVRKSMETETAHDA
Ga0137393_1158639323300011271Vadose Zone SoilMQFGLNESQEFLRDSAHKFFAGECPITEVRRLMETDTAFGA
Ga0137363_1074190713300012202Vadose Zone SoilMQFGLSESQQILKDTARKFFAGESPIAAVRKAMQTDTAYDAAL
Ga0137394_1003969643300012922Vadose Zone SoilMQFGLTESQEFLKNSARKFFAGECPSMEMRRVMQTDTAYD
Ga0137413_1060364323300012924Vadose Zone SoilMQFGLSESQQILKDTARKIFDGESPIAAVRKAMETDTAYDA
Ga0137413_1150966123300012924Vadose Zone SoilMLKRSTTMQFGLSESQQILKDTARKFFAGESPTAAVRKAIETD
Ga0164305_1026500033300012989SoilMQFGLSESQQILKDTAHKFFAGESPIAAVRKAMETETAYDA
Ga0157374_1278629523300013296Miscanthus RhizosphereMQFGLSESQQILKDTARKFFAGESPIAAVRKAMGTESAYD
Ga0181518_1046555813300014156BogMQFGLSESQEILKDNARKFFAGECPMNQVRKLAETGSAYD
Ga0137412_1058108923300015242Vadose Zone SoilMQFGLSESQQILKDTARKFFAGESPIAAVRRAMETE
Ga0182037_1099857433300016404SoilMQFGLSESQQILKDTARKFFSGECAIAEVRRLMESDTA
Ga0187856_125410713300017925PeatlandMEFGLNESQQLLKDNARKFFAGECPMAEVRRIMETDTAYDA
Ga0187778_1022935413300017961Tropical PeatlandMEFGLSESQQLLKDNARKFFATECPMAQVRRLMET
Ga0187782_1115177413300017975Tropical PeatlandMEFGLSESQQLLKDNARKFFAGECPIEEVRRLMDTE
Ga0187822_1015105023300017994Freshwater SedimentMEFGLSESQQFLKDNARKFFAGECPMAEVRRIMETDAADDAA
Ga0187816_1011716413300017995Freshwater SedimentMEFGLSESQQMLKENARKFFAGECPMSEVRRLMETDSAYD
Ga0187880_114585823300018016PeatlandMQFGLNESQEILKQNARQFFAGECPMTHVRHLAESKQPY
Ga0187772_1120250213300018085Tropical PeatlandMEFGLNESQEILRDSARSFFTGECPMSEVRRLMETDAA
Ga0210407_1073471323300020579SoilMQFGLSESQEFLKDSARKFFAGECPSAQMRRLMETDT
Ga0210395_1036952223300020582SoilMEFGLNESQVLLKDNARKFFAGECPMEEVRRLMETETAHD
Ga0210400_1011464833300021170SoilMQFGLSESQQILKDTARKFFAGESPIAAVRKSMETDTAY
Ga0210400_1084291323300021170SoilMQFGLSESQTILKNNARKFFAAECPIAEVRRVMETPTAHDDKLWRH
Ga0210405_1048804313300021171SoilMQFGLSESQEFLKNSARKFFAGECPSSEMRRLMETDTAYD
Ga0210405_1099016913300021171SoilMEFGLSESQKFLKDSARKFFAGECPSVEMRRLMET
Ga0210388_1020295933300021181SoilMQFGLSESQEFLKDSTRKFFTGECPAADMRRLMETDTAY
Ga0210387_1032533623300021405SoilMEFGLSESQVILKDSARKFFAGECPMEEVRRLMETETAYDE
Ga0210386_1001627253300021406SoilMQFGLSESQELLKDGARKFFAGECPNTEMRRLMETET
Ga0210394_1093486613300021420SoilMQFGLTESQEFLKNSARQFFAGECPSAEMRRLMETDT
Ga0210394_1166382913300021420SoilMQFGLSEGQEFLKESAHKFFAGECSSAEMRRLMETETAY
Ga0210391_1030361813300021433SoilMQFGLSESQEMLRDGARKFFAGECPNSEMRRLMETE
Ga0210391_1051361523300021433SoilMQFGLSESQEFLKDSARKFFAGECPSAEVRRLMDTGSAY
Ga0210390_1012196213300021474SoilMQFGLNESQEILKQNARQFFAGECPMTLVRELAESKQPYDAAL
Ga0210392_1093183613300021475SoilMQFGLSESQQILKSNARKFFAAECPISEVRRIMETDTAQDKK
Ga0210402_1014546113300021478SoilMQFGLTERQEFLKDSARKFFAGECPSAEMRRLMETD
Ga0210402_1131914913300021478SoilMQFGLSESQQILKTNARKFFAAECPMTEVRRIMETE
Ga0210410_1057052613300021479SoilMQFGLNESQEFLKDSARKFFAGECPSAEMRRLMETNTAYD
Ga0210409_1014360733300021559SoilMQFGLSASQEILKDSARKFFAGECPIAEVRRLMETD
Ga0210409_1017209233300021559SoilMQFGLSESQQLLKANARKFFAGECPMEKVRQLLKTDTAFDRE
Ga0242657_100059943300022722SoilMQFGLSESQEFLRDSARKFFAGECSSAEMRRLMET
Ga0207693_1117165723300025915Corn, Switchgrass And Miscanthus RhizosphereMQFGLSESQQILKDTARKFFAGESPIAAVRKAMETDTAYDAALWTK
Ga0207694_1169307723300025924Corn RhizosphereMQFGLSESQQILKDTAHKFFAGEIPIAAVRKAMETESAYDA
Ga0207686_1123830413300025934Miscanthus RhizosphereMQFGLSESQQILKDTARKFFAGESPIAAVRKAMETE
Ga0207711_1067931023300025941Switchgrass RhizosphereMQFGLNESQQILQSNARKFFAAECPMSEVRRIAETETA
Ga0209377_110668343300026334SoilMQFGLSESQQILKDTARKFFSGECSMAEVRRVAETATAHDL
Ga0257163_101871023300026359SoilMQFGLSESQEFLKDSARKFFAGECPSAEMRRLMDTD
Ga0257158_111593713300026515SoilMQFGLSESQDFLKDSARKFFAGECPSVEMRRLMETD
Ga0209577_1080447823300026552SoilMQFGLSESQQILKDTARKFLAGECPIAAVRKAMETDTA
Ga0207765_10674313300026819Tropical Forest SoilMQFGLNESQEMLRDSLRSFFAGECPMSEVRRLMATDC
Ga0209684_104919133300027527Tropical Forest SoilMQFGLNESQEILKDGARKFFAGECPISEVRRLADTDTAFDA
Ga0209735_102424923300027562Forest SoilMQFGLSESQEFLKDTAHKFFAGECPSAEMRRLMETDTAYDAAL
Ga0209736_103647123300027660Forest SoilMQFGLSEHQEFLKDSARKFFAGECPSAEMRRLVETATAYDAAL
Ga0207862_106839123300027703Tropical Forest SoilMEFGLNESQEILRDSARSFFAGECSINEVRRLMAT
Ga0209283_1014655433300027875Vadose Zone SoilMQFGLSESQEILKGSARKFFAGECPISDVRRLMETDTAYDA
Ga0209283_1064622313300027875Vadose Zone SoilMQFGLNESQEFLRDSAHKFFAGECPITEVRRLMETDTAFD
Ga0209380_1068221813300027889SoilMQFGLSESQQILKNNARKFFSAECPIGEVRRISETAT
Ga0209698_1140316223300027911WatershedsMQFGLNESQEILKESARKFFAGECPIAEVRRLMETD
Ga0308309_1139824723300028906SoilMQFGLSESQEFLKASARKFFAGECPSAETRRLMET
Ga0302177_1002624413300030053PalsaMEFGLNESQLLLRDNARKFFAGECPMEEVRRLMETE
Ga0170823_1496794323300031128Forest SoilMQFGLTESQEFLKNSARQFFAGECPSPEMRRLAETDTAYDS
Ga0170824_11755082223300031231Forest SoilMQFGLSESQQILKDTARKFFAGESPIAAIRKAMETE
Ga0302325_1107575223300031234PalsaMQFGLSESQQILKTNARKFFAAECPISEVRRIMETDTAQDQKLWRSMAEQV
Ga0310888_1039054113300031538SoilMQFGLNESQVILRDSAREFFAGECPPATVRRLIETDA
Ga0310686_10128793533300031708SoilMQFGLSESQEFLKDSARKFFAGECPSTEMRRLMET
Ga0310686_10157756113300031708SoilMEFGLSESQQFLKYNARKFFAGECPMAEVRRIMETD
Ga0307476_1019542513300031715Hardwood Forest SoilMQFGLSESQEFLKDSARKFFAGECPAAEVRRLMETE
Ga0307476_1024110013300031715Hardwood Forest SoilMQFGLNESQEILRESARKFFAGECPIPEVRRIMDIETAFDAN
Ga0307474_1150264713300031718Hardwood Forest SoilMQFGLNESQEILKQNARQFFAGECPMTHVRQLAESKQ
Ga0318494_1034657813300031751SoilMQFGLNESQQFLRDSARKFFAGECPIAEVRRLMETD
Ga0310917_1010042733300031833SoilMEFGLSESQQLLKDNARKFFAGECPMQEVRRLMETETA
Ga0308174_1131324313300031939SoilMQFGLSESQQILKDTARKFFAGECAMADTRKLMETDTAY
Ga0310884_1031617923300031944SoilMQFGLNESQVILRDSAREFFAGECPPATVRRLIETDAAHDRAV
Ga0318533_1034672823300032059SoilMQFGLSESQQMLKDNARKFFVGECLMEEVRRLMETD
Ga0306924_1133983713300032076SoilMQFGLSESQQILKDTSRKFFSGECPVGEVRRLMETE
Ga0318577_1001500513300032091SoilMQFGLNESQQFLRDSARKFFAGECQIAEVRRLMET
Ga0307471_10220703823300032180Hardwood Forest SoilMQFGLTESQEFLKNSARKFFAGECPSTEMRRLMETDTAYDV
Ga0307471_10270720113300032180Hardwood Forest SoilMQFGLTESQEFLKNSARQFFAGECPSSEMRRLAET
Ga0335078_1243672213300032805SoilMEFGLSESQQLLKENARKFFAGECPMAEVRRQMETSTAYDA
Ga0335080_1189974613300032828SoilMNFGLSESQRILKENARKFFINECPMAEVRRIMEETDHAFDAALYRKMA
Ga0335070_1052807323300032829SoilMQFGLNESQKILQSNARKFFAAECAPADVRRIMETGTAH
Ga0335081_1223850913300032892SoilMQFGLSDSQQLLKENARKFFATECPMAGVRRLMETGTA
Ga0310810_1036149913300033412SoilMQFGLSESQQILKDTARKFFAGESPIAAVRKAMETDTAYDAAL
Ga0371490_113211413300033561Peat SoilMQFGLSESQEFLKDSARKFFAGECPSAEMRRVMETD

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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