NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F105681

Metagenome Family F105681

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F105681
Family Type Metagenome
Number of Sequences 100
Average Sequence Length 48 residues
Representative Sequence MADDKEPFEALTATAEQTPEQITKQTQGAMENYFGWLQKTMSALPWSNTN
Number of Associated Samples 81
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 89.00 %
% of genes near scaffold ends (potentially truncated) 91.00 %
% of genes from short scaffolds (< 2000 bps) 91.00 %
Associated GOLD sequencing projects 71
AlphaFold2 3D model prediction Yes
3D model pTM-score0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (54.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(27.000 % of family members)
Environment Ontology (ENVO) Unclassified
(50.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(55.000 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 53.85%    β-sheet: 0.00%    Coil/Unstructured: 46.15%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.41
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF09361Phasin_2 9.00
PF09926DUF2158 6.00
PF06577EipA 2.00
PF04392ABC_sub_bind 2.00
PF13975gag-asp_proteas 2.00
PF00903Glyoxalase 2.00
PF01336tRNA_anti-codon 1.00
PF00486Trans_reg_C 1.00
PF07883Cupin_2 1.00
PF02617ClpS 1.00
PF01266DAO 1.00
PF13683rve_3 1.00
PF13591MerR_2 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG2984ABC-type uncharacterized transport system, periplasmic componentGeneral function prediction only [R] 2.00
COG2127ATP-dependent Clp protease adapter protein ClpSPosttranslational modification, protein turnover, chaperones [O] 1.00


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A54.00 %
All OrganismsrootAll Organisms46.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000816|AF_2010_repII_A10DRAFT_1023832All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis648Open in IMG/M
3300005179|Ga0066684_10764165All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae642Open in IMG/M
3300005184|Ga0066671_10779322Not Available613Open in IMG/M
3300005437|Ga0070710_10377627Not Available945Open in IMG/M
3300005518|Ga0070699_101478281Not Available623Open in IMG/M
3300005764|Ga0066903_108706718Not Available516Open in IMG/M
3300005764|Ga0066903_108801938Not Available512Open in IMG/M
3300005764|Ga0066903_109029701Not Available504Open in IMG/M
3300006028|Ga0070717_10731101All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria900Open in IMG/M
3300006041|Ga0075023_100195267Not Available777Open in IMG/M
3300006047|Ga0075024_100556179Not Available610Open in IMG/M
3300006174|Ga0075014_100167498Not Available1086Open in IMG/M
3300006806|Ga0079220_10730343Not Available734Open in IMG/M
3300006954|Ga0079219_10836917All Organisms → cellular organisms → Bacteria731Open in IMG/M
3300009137|Ga0066709_104276795Not Available520Open in IMG/M
3300010048|Ga0126373_11790564Not Available678Open in IMG/M
3300010358|Ga0126370_11610012All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium622Open in IMG/M
3300010359|Ga0126376_11220279All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis768Open in IMG/M
3300010360|Ga0126372_10973535Not Available858Open in IMG/M
3300010361|Ga0126378_11149866Not Available875Open in IMG/M
3300010361|Ga0126378_11248037All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium840Open in IMG/M
3300010362|Ga0126377_12505045Not Available592Open in IMG/M
3300010376|Ga0126381_101813153All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium881Open in IMG/M
3300010398|Ga0126383_11004376All Organisms → cellular organisms → Bacteria923Open in IMG/M
3300010398|Ga0126383_11492766All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis766Open in IMG/M
3300010863|Ga0124850_1143860Not Available553Open in IMG/M
3300010937|Ga0137776_1430670Not Available726Open in IMG/M
3300010937|Ga0137776_1888959Not Available1021Open in IMG/M
3300012189|Ga0137388_10629019All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium998Open in IMG/M
3300012201|Ga0137365_11208237Not Available540Open in IMG/M
3300012361|Ga0137360_11684926Not Available539Open in IMG/M
3300012948|Ga0126375_10343290All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1056Open in IMG/M
3300016270|Ga0182036_11294050Not Available608Open in IMG/M
3300016270|Ga0182036_11489201All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria568Open in IMG/M
3300016294|Ga0182041_11113470Not Available717Open in IMG/M
3300016294|Ga0182041_11486002All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium623Open in IMG/M
3300016341|Ga0182035_10001868All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria10895Open in IMG/M
3300016341|Ga0182035_10150421Not Available1787Open in IMG/M
3300016341|Ga0182035_10960931Not Available756Open in IMG/M
3300016341|Ga0182035_11013647Not Available736Open in IMG/M
3300016357|Ga0182032_10133731Not Available1810Open in IMG/M
3300016371|Ga0182034_10290171All Organisms → cellular organisms → Bacteria1307Open in IMG/M
3300016371|Ga0182034_10501198Not Available1013Open in IMG/M
3300016371|Ga0182034_11714515Not Available553Open in IMG/M
3300016387|Ga0182040_10978832All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium704Open in IMG/M
3300016404|Ga0182037_11741068Not Available556Open in IMG/M
3300016422|Ga0182039_10262789Not Available1412Open in IMG/M
3300016422|Ga0182039_12174307All Organisms → cellular organisms → Bacteria512Open in IMG/M
3300017822|Ga0187802_10198144All Organisms → cellular organisms → Bacteria772Open in IMG/M
3300017924|Ga0187820_1056891All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1067Open in IMG/M
3300017933|Ga0187801_10237844Not Available729Open in IMG/M
3300017934|Ga0187803_10240664All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium716Open in IMG/M
3300017955|Ga0187817_10584942Not Available712Open in IMG/M
3300017959|Ga0187779_10334947All Organisms → cellular organisms → Bacteria → Proteobacteria975Open in IMG/M
3300017970|Ga0187783_10576732Not Available814Open in IMG/M
3300017993|Ga0187823_10107438All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria842Open in IMG/M
3300021168|Ga0210406_10962913All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales638Open in IMG/M
3300021178|Ga0210408_11332434Not Available543Open in IMG/M
3300027765|Ga0209073_10364398All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales586Open in IMG/M
3300027775|Ga0209177_10462738Not Available521Open in IMG/M
3300027910|Ga0209583_10231700Not Available805Open in IMG/M
3300027911|Ga0209698_11058010Not Available603Open in IMG/M
3300031057|Ga0170834_112562576All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis704Open in IMG/M
3300031446|Ga0170820_17142477All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria668Open in IMG/M
3300031469|Ga0170819_16276050All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium739Open in IMG/M
3300031544|Ga0318534_10237034Not Available1053Open in IMG/M
3300031546|Ga0318538_10030781All Organisms → cellular organisms → Bacteria2498Open in IMG/M
3300031668|Ga0318542_10288674Not Available838Open in IMG/M
3300031682|Ga0318560_10663675Not Available564Open in IMG/M
3300031708|Ga0310686_112519985All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria642Open in IMG/M
3300031724|Ga0318500_10000627All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales8310Open in IMG/M
3300031744|Ga0306918_10059494Not Available2577Open in IMG/M
3300031744|Ga0306918_11307674All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium557Open in IMG/M
3300031747|Ga0318502_10404866Not Available812Open in IMG/M
3300031751|Ga0318494_10143433All Organisms → cellular organisms → Bacteria1342Open in IMG/M
3300031763|Ga0318537_10004964All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales4336Open in IMG/M
3300031765|Ga0318554_10790419Not Available531Open in IMG/M
3300031771|Ga0318546_11143163Not Available547Open in IMG/M
3300031777|Ga0318543_10003118All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales5139Open in IMG/M
3300031819|Ga0318568_10764131Not Available600Open in IMG/M
3300031833|Ga0310917_10604335All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium745Open in IMG/M
3300031833|Ga0310917_10811711Not Available631Open in IMG/M
3300031833|Ga0310917_11085788All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales534Open in IMG/M
3300031859|Ga0318527_10398461Not Available587Open in IMG/M
3300031879|Ga0306919_11081785Not Available612Open in IMG/M
3300031890|Ga0306925_10199724All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi2156Open in IMG/M
3300031910|Ga0306923_12280216All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria540Open in IMG/M
3300031912|Ga0306921_10619914All Organisms → cellular organisms → Bacteria → Proteobacteria1249Open in IMG/M
3300031946|Ga0310910_11358810All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium548Open in IMG/M
3300031954|Ga0306926_12244894All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium606Open in IMG/M
3300031959|Ga0318530_10001354All Organisms → cellular organisms → Bacteria6392Open in IMG/M
3300032001|Ga0306922_10119448All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2802Open in IMG/M
3300032001|Ga0306922_11499130Not Available674Open in IMG/M
3300032035|Ga0310911_10126729Not Available1422Open in IMG/M
3300032035|Ga0310911_10827630All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria535Open in IMG/M
3300032051|Ga0318532_10267861Not Available607Open in IMG/M
3300032060|Ga0318505_10565109Not Available535Open in IMG/M
3300032063|Ga0318504_10502897Not Available580Open in IMG/M
3300032261|Ga0306920_101758186Not Available876Open in IMG/M
3300032261|Ga0306920_103099060All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales625Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil27.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil25.00%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil11.00%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment6.00%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds5.00%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil4.00%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil4.00%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil4.00%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil3.00%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere3.00%
SedimentEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment2.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil2.00%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland2.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.00%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil1.00%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000816Forest soil microbial communities from Amazon forest - 2010 replicate II A10EnvironmentalOpen in IMG/M
3300005179Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133EnvironmentalOpen in IMG/M
3300005184Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120EnvironmentalOpen in IMG/M
3300005437Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaGEnvironmentalOpen in IMG/M
3300005518Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaGEnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300006028Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaGEnvironmentalOpen in IMG/M
3300006041Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014EnvironmentalOpen in IMG/M
3300006047Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013EnvironmentalOpen in IMG/M
3300006174Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014EnvironmentalOpen in IMG/M
3300006806Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100EnvironmentalOpen in IMG/M
3300006954Agricultural soil microbial communities from Georgia to study Nitrogen management - GA ControlEnvironmentalOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300010863Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (PacBio error correction)EnvironmentalOpen in IMG/M
3300010937Fumarole sediment microbial communities, Furnas, Sao Miguel, Azores. Combined Assembly of Gp0156138, Gp0156139EnvironmentalOpen in IMG/M
3300012189Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaGEnvironmentalOpen in IMG/M
3300012201Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012948Tropical forest soil microbial communities from Panama - MetaG Plot_14EnvironmentalOpen in IMG/M
3300016270Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080EnvironmentalOpen in IMG/M
3300016294Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178EnvironmentalOpen in IMG/M
3300016341Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170EnvironmentalOpen in IMG/M
3300016357Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000EnvironmentalOpen in IMG/M
3300016371Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172EnvironmentalOpen in IMG/M
3300016387Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176EnvironmentalOpen in IMG/M
3300016404Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082EnvironmentalOpen in IMG/M
3300016422Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111EnvironmentalOpen in IMG/M
3300017822Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2EnvironmentalOpen in IMG/M
3300017924Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5EnvironmentalOpen in IMG/M
3300017933Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1EnvironmentalOpen in IMG/M
3300017934Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3EnvironmentalOpen in IMG/M
3300017955Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2EnvironmentalOpen in IMG/M
3300017959Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MGEnvironmentalOpen in IMG/M
3300017970Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300017993Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_3EnvironmentalOpen in IMG/M
3300021168Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-MEnvironmentalOpen in IMG/M
3300021178Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-MEnvironmentalOpen in IMG/M
3300027765Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)EnvironmentalOpen in IMG/M
3300027775Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)EnvironmentalOpen in IMG/M
3300027910Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)EnvironmentalOpen in IMG/M
3300027911Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)EnvironmentalOpen in IMG/M
3300031057Oak Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031446Fir Summer Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031469Fir Spring Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031544Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26EnvironmentalOpen in IMG/M
3300031546Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23EnvironmentalOpen in IMG/M
3300031668Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23EnvironmentalOpen in IMG/M
3300031682Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031724Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20EnvironmentalOpen in IMG/M
3300031744Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)EnvironmentalOpen in IMG/M
3300031747Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22EnvironmentalOpen in IMG/M
3300031751Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24EnvironmentalOpen in IMG/M
3300031763Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29EnvironmentalOpen in IMG/M
3300031765Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22EnvironmentalOpen in IMG/M
3300031771Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19EnvironmentalOpen in IMG/M
3300031777Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24EnvironmentalOpen in IMG/M
3300031819Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21EnvironmentalOpen in IMG/M
3300031833Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178EnvironmentalOpen in IMG/M
3300031859Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25EnvironmentalOpen in IMG/M
3300031879Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)EnvironmentalOpen in IMG/M
3300031890Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)EnvironmentalOpen in IMG/M
3300031910Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)EnvironmentalOpen in IMG/M
3300031912Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)EnvironmentalOpen in IMG/M
3300031946Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172EnvironmentalOpen in IMG/M
3300031954Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)EnvironmentalOpen in IMG/M
3300031959Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24EnvironmentalOpen in IMG/M
3300032001Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)EnvironmentalOpen in IMG/M
3300032035Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170EnvironmentalOpen in IMG/M
3300032051Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26EnvironmentalOpen in IMG/M
3300032060Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18EnvironmentalOpen in IMG/M
3300032063Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17EnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
AF_2010_repII_A10DRAFT_102383233300000816Forest SoilMTDKEPFESLTAAQTAEQMTKQTQGAMENYFGWLQMTMPTFPWANTNL
Ga0066684_1076416523300005179SoilMTDKERFESLTATAAQSAEQMTKQTQVAMENYFGWFQNAMSAIPWSNTNLNRILL
Ga0066671_1077932213300005184SoilMADKESFESLTTTARQTAEQFTKQAQGPMENYLGWLQTSMAALPWSNTNLNRILL
Ga0070710_1037762713300005437Corn, Switchgrass And Miscanthus RhizosphereMADDKEPFEASTATAEQTAEQITKQTQGAMENFFGWLQKTMSALPWSNTNLNRILLS
Ga0070699_10147828113300005518Corn, Switchgrass And Miscanthus RhizosphereMAEDESFEALTATDEQTAEQITKQTQGAMENYFGWLQKTMSALPWSDTNLDRILLGYATQNV
Ga0066903_10870671813300005764Tropical Forest SoilMAEDKETFEALTATEKQTAEQIMKQTQGAMENYFGWLQKTMSALPWSDTNL
Ga0066903_10880193823300005764Tropical Forest SoilVAEDKEPFEALTATEEQTAEQITKQTQGAMENYFGWLQTTMSTL
Ga0066903_10902970113300005764Tropical Forest SoilMAKDKELFEGLTTAAQQTAKQITEQTQGAMEDYFGWLQTTMSAFPWSNTNLNRILLSHATQNV
Ga0070717_1073110123300006028Corn, Switchgrass And Miscanthus RhizosphereMAKDKEPLEAFTATAAQTAEQMTKQTQDYFGWLQNTMSTF
Ga0075023_10019526713300006041WatershedsMAKDQDPLEAFTVTAAQTAEQTTKQTQGAMENYFGWL
Ga0075024_10055617923300006047WatershedsMADKEPSLTGVARQTAEQITQQTTHAMETYFSWLPNVMSAFPWS
Ga0075014_10016749823300006174WatershedsMAEDKEPFEALRATAEQSAEQITKQTQGAMENYFGWLHRRRVLGE*
Ga0079220_1073034323300006806Agricultural SoilMAQDEKPSEARKATGERTAQEIVKQAQGAMENYFGWLQKSMSTLPWSNTNLNR
Ga0079219_1083691723300006954Agricultural SoilMAQDEKPSEARKATGERTAQEIVKQAQGAMENYFGWLQKSMSTLPWSNTNLNRVLLS
Ga0066709_10427679513300009137Grasslands SoilMAEDKEPFEALTATEEQTAEQITKQITKQTQGAMENYFDWLQKT
Ga0126373_1179056423300010048Tropical Forest SoilVAEDKVPFEALTATEEQAIEQITKQTQGAMENYFGCLQKAMSALPWSNTNLNRVLL
Ga0126370_1161001223300010358Tropical Forest SoilMAKDKGPFGGLTTTAAQTAEQMTKQTQGAMENYFGWLQTTTSALPWSNTNLNR
Ga0126376_1122027923300010359Tropical Forest SoilMTDKEPFESLTAAQTAEQMTKQTQGAMENYFGSLQTTMSVFPWSNTNLNRILLT*
Ga0126372_1097353513300010360Tropical Forest SoilMAKDKEPFEALTATEEQTAEQITRQTQGAMENYFGWLQKTMSAL
Ga0126378_1114986633300010361Tropical Forest SoilMAADKEPFKALPPTEEQTAEQITKQTQGAMENYFDWLQKTRFLGVTRI*
Ga0126378_1124803713300010361Tropical Forest SoilDKGPFEGLTATAAQTAEQMTKQTQGAMENYFGWLQTTMSAFPWSNTNLNRVR*
Ga0126377_1250504523300010362Tropical Forest SoilMAKDKEPFESLTATAAQTAERMTKQTQGAMENYLGWLPTTMSALPWSNTNLNR
Ga0126381_10181315333300010376Tropical Forest SoilMAKDKEPFEALTASAAQTAEQITKQTQGAMENYFGWLQKTM
Ga0126383_1100437613300010398Tropical Forest SoilMAKDKEPFESLTATAAQTAERMTKQTQGAMENYFG
Ga0126383_1149276633300010398Tropical Forest SoilMTDKEPFESLTATAAKTAEQITKQTQGAMENYFGWLQM
Ga0124850_114386023300010863Tropical Forest SoilMAKDKEPVEILTAGAEQTAEQTTKQTQDYFGWLQQKTMSVPVTRI*
Ga0137776_143067013300010937SedimentMANDKDHPLEPFSFNATKTAEQMTKQTQGAMDNYFGWLQT
Ga0137776_188895923300010937SedimentMTKEDPLEPFSFNATKTAEQMTKQTQGAMDNYFGWLQT
Ga0137388_1062901913300012189Vadose Zone SoilMADDKEPFEALTATAEQTPEQITKQTQGAMENYFGWLQKTMSALPWSNTN
Ga0137365_1120823713300012201Vadose Zone SoilMPAMADKEPFESLTTTAAQSVDQITNQTQGAMENYFGWLQTTTSALPWSNTNLNRILLSN
Ga0137360_1168492613300012361Vadose Zone SoilMAEDKEPFEALTATEEQTAEQITKQTQGAMENYFGWLQKTMSALPWSNTNLIEYF*
Ga0126375_1034329013300012948Tropical Forest SoilMAKDRESIESLTATAAQTAELITKQTQGAMENYFG
Ga0182036_1129405013300016270SoilMAKDKDPLEAFTVTAGQTAEQMMKQTQAAIENYFGWLQMTMSTFPWSNT
Ga0182036_1148920133300016270SoilMAKDKDPLEAFTATAAQMTKQTQVAMENYFGWLQKA
Ga0182041_1111347013300016294SoilMANDKEPFEALTATAEQTAEQITKQTQGAMEKYFRWLHNTMSAFPWSSTNLNRIL
Ga0182041_1148600213300016294SoilMAKDKGPFEALTATATQTAEQITKQTQGAMESYFGWLQKAMSTYPWS
Ga0182035_10001868163300016341SoilMAKGQDPLEALTATAAQTAQQITKQTQGAMESYFGWLQ
Ga0182035_1015042113300016341SoilMAKDKEPFEALAATAERTAEQITKQTQGAMEYYFGWLQNAMSALPWSNTNLNRV
Ga0182035_1096093133300016341SoilMAKDKEPFEGLTTAAQQTAKQITEQTQGAMENYFGWLQTTMSAFPWS
Ga0182035_1101364733300016341SoilMANDKEPFEALTATAEQTAEQITKQTQGAMEKYFRWLHNTMSAFPWSSTNLNRILLSNA
Ga0182032_1013373133300016357SoilMAKDKEPLEAFTAAAAQMTKQTQGAMENYFGWLQMTMPTFPWSNTNLN
Ga0182034_1029017113300016371SoilMAKDKGPFEDLTTTAAQTAEQMTKQTQGVMENYFGWLQTTTSALPWS
Ga0182034_1050119813300016371SoilMAKDREPVEILTASAEQTAEQITRQTQDYFGWLQKTMSVPWSHTNLNR
Ga0182034_1171451513300016371SoilMAKDKEPFEALAATAERTAEQITKQTQGPMEYYFGWLQNAMSALPWSNTNLNRVLLRNATQN
Ga0182040_1097883223300016387SoilMAKDTEPLEAFTTSAAQTAEQLTKQTQGAMENYVAWLQTTMSVLPWS
Ga0182037_1174106823300016404SoilMAKDKEPLQVFIATAAQTAEQMRTQTQGAMENYFGW
Ga0182039_1026278913300016422SoilMRKDKESIESLTANAEQTAEQITKQTQDYFGWLQKTMSVPWSHTNLNRILLN
Ga0182039_1217430713300016422SoilMAKDKEPFEGLTTAAQQTAKQITEQTQGAMENYFGWLQTTMSAFPWSNTNLNRILLSHATQN
Ga0187802_1019814423300017822Freshwater SedimentMKSTAAVLEALTATAEQSAEQITKQTQGAMENYFGWLHRRRVLGE
Ga0187820_105689133300017924Freshwater SedimentMAEDKECFEALTATAEQTAEQITKQTQGAMENYFGWLQKTIS
Ga0187801_1023784423300017933Freshwater SedimentMAEDKEPFEALTATEEQTAEQITKQTQGAMENYFGWLQKTMSALPWTNTNLDRILLSY
Ga0187803_1024066413300017934Freshwater SedimentMAKDKEPFEALTGTAQETAKQITEQTQGAMENYFGWLQTTMSSTFF
Ga0187817_1058494213300017955Freshwater SedimentLHHHTYEDTAMAEDQEPFEALTATAEQSAEQITKQTQRAMENYFGWLHRRRVLGE
Ga0187779_1033494733300017959Tropical PeatlandMAKDKEPFEGLTTSAQQTAKQITEQTQGAMENYFGGLQTTMSVFPWS
Ga0187783_1057673223300017970Tropical PeatlandMNLNENTAMTKDEEPLEAFVATAAQLRAQMQGAMENYFGWLQTTMST
Ga0187823_1010743813300017993Freshwater SedimentMAEDKECFEALTATAEQTAEQITKQTQGAMENYFGWLQKTISALP
Ga0210406_1096291313300021168SoilMAEDGPFEALRATEEQTAEQITKQTQGAMENYFGWLQKSMSALPWTNKNLDRILLGYAT
Ga0210408_1133243423300021178SoilMAKDEEPFESVTVTAAQTAKQITEQTQEVMENYFGWLQKTMPALPWSNTNLNRILLNH
Ga0209073_1036439813300027765Agricultural SoilMAEEKEPFEALTTTAAQTAEQITKQTQGAMENYFGWLQNTMSTLP
Ga0209177_1046273823300027775Agricultural SoilMAKDKTPLEAFTATTALTAEQMTKQTQDAMENYFGWLQKAM
Ga0209583_1023170033300027910WatershedsMAKDQDPLEAFTVTAAQTAEQTTKQTQGAMENYFGWLQKSMSTFPWSNTN
Ga0209698_1105801023300027911WatershedsMAEDKEPFEALTATEEQTAEQITKQTKGAMENYFGWLQSCDVDDAKF
Ga0170834_11256257633300031057Forest SoilMAKDKEPLEAFTATAAQTAEQMTKQTQDYFGWLQNTMSTFPWSNTNLNRILLSNATKN
Ga0170820_1714247723300031446Forest SoilMTEDKERFEALTATAEQTAEQITKQTQGAMENYFCWLQKTMSALPWRNTNLNRILLSNATQNV
Ga0170819_1627605013300031469Forest SoilMADDKEPFEALTATAEQTAEQITKQTQGAMENYFGWL
Ga0318534_1023703423300031544SoilMAEDKETFEALTATEKQTAEQIMKQTQGAMENYFGWPQK
Ga0318538_1003078153300031546SoilMAEDKETFEALTATEKQTAEQIMKQTQGAMENYFGWLQKTMSALPWSDTNLHRILLNY
Ga0318542_1028867413300031668SoilMAEDKETFEALTATEKQTAEQIMKQTQGAMENYFGWLQKTMSALPW
Ga0318560_1066367513300031682SoilMAKDKEPFEALAATAERTAEQITKQTQGAMEYYFGWLQNAMSALPWSNTNLN
Ga0310686_11251998513300031708SoilMAKDKEPFEALTGMAELTAEQIMKQTQGAMENYFGWLQTTMSAFPWSN
Ga0318500_1000062713300031724SoilMAKYEEPLKALTTSATQTTEQITKQTQGALENYFGWLQTTMSAVPWSNTNLNRILLSN
Ga0306918_1005949443300031744SoilMAKYKEPFAALTATEEQTADQITKQTQRAMENYFGWLQKTMSATSLE
Ga0306918_1130767423300031744SoilMAKYEEPLKALTTSATQTTEQITKQTQGALENYFGWLQT
Ga0318502_1040486613300031747SoilMAKDKEPFEALAATAERTAEQITKQTQGAMEYYFGWLQNAMSALPWSNTNLNRVLLRNATQNVT
Ga0318494_1014343333300031751SoilMAEDKETFEALTATEKQTAEQIMKQTQGAMENYFGWLQKTMSALPWSDTNLHRILLNCAT
Ga0318537_1000496413300031763SoilMAKYEEPLKALTTSATQTTEQITKQTQGALENYFGWLQTTMSAVPWS
Ga0318554_1079041913300031765SoilMAKDREPVEILTASAEQTAEQITKQTQDYFGWLQKTMSVP
Ga0318546_1114316313300031771SoilMAKDKEPFEGLTTAAQQTAKQITEQTQGAMENYFGWLQTTMSAFPWSNTNLNRILLTHAT
Ga0318543_1000311813300031777SoilMAKYEEPLKALTTSATQTTEQITKQTQGALENYFGWLQTTMSA
Ga0318568_1076413113300031819SoilMAEDKETFEALTATEKQTAEQIMKQTQGAMENYFGWLQKTMSALPWSDTNLH
Ga0310917_1060433513300031833SoilMAKDKDPLEAFTVTAGQTAVQMMKQTLAAMENYFGWLQMTMS
Ga0310917_1081171113300031833SoilMAKYKEPFAALTATEEQTADQITKQTQRAMENYFGWLQK
Ga0310917_1108578823300031833SoilMAKDKEPFEGLTTAAQQTAKQITEQTQGAMENYFGWLQTTMSAFPWSNTNLNRILL
Ga0318527_1039846113300031859SoilDTAMAKDKEPFEALTAPEEQTAEEITKQTQGAMENYFGWLQKTMSHFHGVTRI
Ga0306919_1108178523300031879SoilMANDKEPFEALTATAEQITKQTQGAMENYFRWLQNTMSAFPWSSTNLNRILL
Ga0306925_1019972453300031890SoilMAKDKEPFEALTATEEQTAEQIMKQTQGAMENYFGWLQKTMSHFHGVTRI
Ga0306923_1228021613300031910SoilMAKDKEPFEGLTTAAQQTAKQITEQTQVAMENYFG
Ga0306921_1061991423300031912SoilMAKDKEPFEALTATEEQTAEQIMKQTQGAMENYFGWLQKTMSHF
Ga0310910_1135881023300031946SoilMAKDKGPFEALTATATQTAEQITKQTQGAMENYFGWLQ
Ga0306926_1224489423300031954SoilMAKDKGPFEALTATATQTAEQITKQTQGAMENYFGWLQKTMSTFPWSNTNLNRILLSNA
Ga0318530_1000135413300031959SoilMPKYEEPLKALTTSATQTTEQITKQTQGALENYFGWLQTTMSAVPWSNTNLN
Ga0306922_1011944853300032001SoilKYKEPFAALTATEEQTADQITKQTQRAMENYFGWLQKTMSATSLE
Ga0306922_1149913013300032001SoilMANDKEPFEALTATAEQTAEQITKQTQGAMENYFRWLHNTMSAFPWSSTNLN
Ga0310911_1012672913300032035SoilMRKDKESIESLTANAEQTAEQITKQTQDYFGWLQKTMSVPWS
Ga0310911_1082763023300032035SoilMAKDKEPFEGLTTAAQQTAKQITEQTQGAMENYFGWLQTTMSA
Ga0318532_1026786113300032051SoilMAKDKEPFEALAATAERTAEQITKQTQGAMEYYFGWLQNAMSALPWSNT
Ga0318505_1056510923300032060SoilMAKYKEPFAALTATEEQTADQITKQTQRAMENYFGWLQKTMSA
Ga0318504_1050289713300032063SoilMAKDQDPLEALTATAAQTAQQITKQTQGAMESYFGWLQKAMSTYPWSNTN
Ga0306920_10175818613300032261SoilMAKDKEPFEALAATAERTAEQITKQTQGAMEYYFGWLQNA
Ga0306920_10309906023300032261SoilMANDKEPFEALTATAEQITKQTQGAMENYFRWLQNTMSAFPWSSTNLNRI


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