Basic Information | |
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Family ID | F105672 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 100 |
Average Sequence Length | 44 residues |
Representative Sequence | MFAGRLTQATLRALDWLAAKTLSPEDGPAHQRTGRRGEEDAY |
Number of Associated Samples | 94 |
Number of Associated Scaffolds | 100 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 100.00 % |
% of genes near scaffold ends (potentially truncated) | 0.00 % |
% of genes from short scaffolds (< 2000 bps) | 0.00 % |
Associated GOLD sequencing projects | 90 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.39 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (99.000 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (13.000 % of family members) |
Environment Ontology (ENVO) | Unclassified (33.000 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (44.000 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 42.86% β-sheet: 0.00% Coil/Unstructured: 57.14% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.39 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Peatland Bog Forest Soil Bog Peatland Freshwater Sediment Iron-Sulfur Acid Spring Watersheds Soil Soil Vadose Zone Soil Terrestrial Soil Tropical Forest Soil Grasslands Soil Peatlands Soil Soil Grasslands Soil Soil Soil Peatland Tropical Peatland Bog Forest Soil Fen Soil Palsa Soil Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Soil Fen Palsa Bog Peat Soil Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI12703J13194_1067622 | 3300001100 | Forest Soil | MLAGRFTQVTLHVLDWLAAKMLRPEDIPARHRTGRR |
JGI12635J15846_102016962 | 3300001593 | Forest Soil | MSGGRITQVTLRALDWLAATVLSPEDIPAHQRTGRRGEEDAYF |
JGI25384J37096_100286541 | 3300002561 | Grasslands Soil | MSSGRLTHATIRALDWLSGKTLPGSTGPAHQRIGRHGEEDAYFF |
JGI25389J43894_10507182 | 3300002916 | Grasslands Soil | MSSGRLTHATMRALDWLSGKTLPGSTGPAHQRIGRHGEEDAYFF |
JGIcombinedJ51221_104117712 | 3300003505 | Forest Soil | MFAARLTQATLRALDWLTRRTLPPEDLPEHQLTGRHGEED |
Ga0062386_1004367413 | 3300004152 | Bog Forest Soil | MSSGRLTHATVRAIDWLAVHTLPAEKTPEHQRTGRRGEEDAYFFLRRRGY |
Ga0062388_1026376073 | 3300004635 | Bog Forest Soil | MFAGRLTQATLRALDWLAAKTLSPEDGPAHQRTGRRGEEDAY |
Ga0066677_108344512 | 3300005171 | Soil | MSSGRLTHATMRALDWLSGKTLPGSTGPAHQRIGRHGEEDAYFFLRKLGYV |
Ga0070708_1003133124 | 3300005445 | Corn, Switchgrass And Miscanthus Rhizosphere | VLTGRLTHATIRALDWLAHRTLPADKKDKHPEHQRTGRRGEEDAYFHLRKLG |
Ga0066689_108686791 | 3300005447 | Soil | MSSGRLTHATIRALDWLSGKTLPGSTGPAHQRIGRHGEEDAYFFLRKLGYV |
Ga0070707_1010977163 | 3300005468 | Corn, Switchgrass And Miscanthus Rhizosphere | MFSGRLTHATIRALDWLAGKTLPRSTGPAHQGIGRHGEEDAY |
Ga0070707_1016769101 | 3300005468 | Corn, Switchgrass And Miscanthus Rhizosphere | MFAGRLTQATLRALDWLAGHTLPPDDLPAHQRTGRRGEEAAYFYL |
Ga0070699_1005199744 | 3300005518 | Corn, Switchgrass And Miscanthus Rhizosphere | MLSGRLTHATIRALDWLSGKTLPGSIGPAHQRIGRHGEEDAYFHLRKLGY |
Ga0066692_103842822 | 3300005555 | Soil | MFAGRLTQATLRALDWLAARTLSPDDTPAHLRIGRR |
Ga0066699_112194051 | 3300005561 | Soil | MFAGRLTQATLRALDWLAARTLSPEDVPTHQRTGRRGEEDAYFYL |
Ga0066795_101772952 | 3300005938 | Soil | MFAGRLTQVTLRALDWLAAKTLSPEDTPAHQRTGRR |
Ga0075029_1002766831 | 3300006052 | Watersheds | MFAGRLTQATVYVLDWLADRTLPPEEMPAHQRTGRRGEEDAYFYLRRRG |
Ga0075014_1005458881 | 3300006174 | Watersheds | MLAGRLTQATLRALDWLAAITLPPDDSPAHQLIGRLGEEHAYF |
Ga0070712_1011449271 | 3300006175 | Corn, Switchgrass And Miscanthus Rhizosphere | MLAGRFTQVTLRALDWFAARMLSPEDIPAHQRTGRRG |
Ga0073928_1000797211 | 3300006893 | Iron-Sulfur Acid Spring | MFAGRLTQATICALDWLAARTLSPEDMPAHPRTGRRGEGDAYCYLRRRGYTIIARN* |
Ga0116222_12542902 | 3300009521 | Peatlands Soil | MSSGRLTHATIHAFDWLAERTLPPEKIPPHQRTGRRGEEAAYFHLRKNGYVM |
Ga0116133_10236554 | 3300009623 | Peatland | MEPSMFAGRLTQATLHILDWLAAKMLSPEEMPVHQR |
Ga0116119_11113931 | 3300009629 | Peatland | MFAGRLTQVTLRALDWLAAITLPPEDLPAHQRTGRRGEEDAYFY |
Ga0116118_10777683 | 3300009637 | Peatland | MFAGRLTQATIRALDWLAARTLAEEDLPAHQRTGRRGEE |
Ga0116121_12051881 | 3300009644 | Peatland | MGFSMFAGRLTQATVHALDWLAARTLAEEDLPAHQRTGRRGEEDAYFYLS |
Ga0116216_107357311 | 3300009698 | Peatlands Soil | MGFSMFAGRLAQATVRALDWLAARTLAAEDLPAHQRTGRRGEEDA |
Ga0116131_12245171 | 3300009760 | Peatland | MFAGRLTAGTLRALDWLAARTLPPEDLPAHHLTGRRGEEDAYFYLR |
Ga0116223_103056251 | 3300009839 | Peatlands Soil | MFSGRLTQATLRALDWLTERTLSPEDIPANQRTGRRGEEDAYFYLRGNILRRKRS |
Ga0116223_107999161 | 3300009839 | Peatlands Soil | MLTGFSGRVTQAAVRALDWVAERTLAPEDIPRHQRTGRRGEEDAYFYLRR |
Ga0116223_108417432 | 3300009839 | Peatlands Soil | MGFLMFAGRLTQATLRALDWLAARTLSAEDLPAHQLTGPRGEE |
Ga0127489_11622061 | 3300010127 | Grasslands Soil | MLSGRLTHATIRALDWLAGKTLPGSTGPAHQRIGRHGEEDAYFHL |
Ga0074045_109086071 | 3300010341 | Bog Forest Soil | MPNIFSGRLTQAAVRALDWVAERTLPAEDIPMHQRT |
Ga0134126_110167871 | 3300010396 | Terrestrial Soil | MPSGRLTHAAIRTLDWLAAKTLSPENIPPHQRTGRAGEEAAYFYLR |
Ga0126383_1000006635 | 3300010398 | Tropical Forest Soil | MLPGSLVQATLRALDWVADRTLLPSNLPEHHRTGRQGEEDAYFYLR* |
Ga0137393_102256373 | 3300011271 | Vadose Zone Soil | MSGRFTHATIRLLDWLTEMTLPATAVPEHQVTGRRGEEGAYFYLRKRG* |
Ga0137377_106420761 | 3300012211 | Vadose Zone Soil | MEFSMFAGRLTQATLRALDWLAARTLSPEDMPAHQRTGRRGEEDA |
Ga0137390_107364861 | 3300012363 | Vadose Zone Soil | MFAGRLTQATLRALDWLAARTLSPEDTPAHQRTGRR |
Ga0137397_112533831 | 3300012685 | Vadose Zone Soil | MFAGRLTQATVRALDWLATKTLSAEDIPAHHVIGRRGEEDAYFYL |
Ga0137396_111938152 | 3300012918 | Vadose Zone Soil | MLAGRFTHATIRALDWLAERTLPAEKIPDRHRTGRRGEEDAYFHLRKLG |
Ga0137394_109090921 | 3300012922 | Vadose Zone Soil | MFAGRLTQATLRALDWLAGRTLPPDDLPPHQRTGRRGEE |
Ga0137413_105581231 | 3300012924 | Vadose Zone Soil | MFSGRVTQATLRALDWLAAHTVAPENLPPHQLTGRRGEEA |
Ga0137419_105306571 | 3300012925 | Vadose Zone Soil | MFAGHLTQVTLRALDWLAARTLAPEDLPAHQRTGRRGEEDA |
Ga0137416_110160691 | 3300012927 | Vadose Zone Soil | MFAGRLTQVTLRALDWLAARTLTAEDMPAHQRTGRRG |
Ga0134076_100165411 | 3300012976 | Grasslands Soil | MLSGRLTHATIRALDWLAGKTLPGSTGPAHQRIGHHGEEDAYFHLRKLGYVM |
Ga0181530_101140491 | 3300014159 | Bog | MGFSMFAGRLTQATIRALDWLAARTLSAEDLPAHQRTGRRGEEDAY |
Ga0182018_101017491 | 3300014489 | Palsa | LSSGRLTHAAIRALDWISARVLPPEKIPAHQLTGRRGEEA |
Ga0182011_107619812 | 3300014496 | Fen | MGFSMFAGRLTQVTLRTLDWLAARTLPPEDIPAHQRTGRRGRILGYRPGC |
Ga0137409_101292013 | 3300015245 | Vadose Zone Soil | MSGGRVTQTTLRALDWLARHTLQAENVPPHQLTGRRGEEDAYFFLRRKGYVIIAR |
Ga0137409_104885971 | 3300015245 | Vadose Zone Soil | MFAGRLTQVTVRALDWLASHTLPPEAGPPHQRTGRRGE |
Ga0187818_100771141 | 3300017823 | Freshwater Sediment | MLAGRLTQATLHALDWVSDRTLPRERTPAHQRTGRRGEEDAY |
Ga0187853_102629981 | 3300017940 | Peatland | MGLYMFAGRLTHAALRALDWLAAKTLSPEDTPAHQRTGRRGEEDAYFYL |
Ga0187808_104906222 | 3300017942 | Freshwater Sediment | MSSGRFTHAAIRALDWLAGRTLPRDTRPEHQRVGKRGEEDAYFYLR |
Ga0187779_109281341 | 3300017959 | Tropical Peatland | MFAGRLTHATLRVLDWLAARTLAPEDAPPHQLTGRRG |
Ga0187782_102718851 | 3300017975 | Tropical Peatland | MSSGRLTHAAVRALDWLAEHTLPPDHRPEHQRTGRRGEDDA |
Ga0187878_13625661 | 3300018005 | Peatland | MFTGRLTQATLRALDWLAAKTLSPEDMPAHQRTGRRGEE |
Ga0187804_102423972 | 3300018006 | Freshwater Sediment | MFAGSLTQATLRALDWLSEKALPPDKTAEHLRTGRRGEEDAYFYL |
Ga0187804_104755361 | 3300018006 | Freshwater Sediment | MFAGRLTQATVRAFDWVANRTLPPEEMPAHQRTGR |
Ga0187884_103400502 | 3300018009 | Peatland | MFAGRLTQATLRALDWLAAKTLPAEDIPAHQRTGRRG |
Ga0187873_13781691 | 3300018013 | Peatland | MFAGRLTQATLRALDWLAAKTLPAEDIPAHQRTGRRGEEDAYF |
Ga0187864_104837811 | 3300018022 | Peatland | MFAGRLTQATLRALDWLAGKTLSPEDTPAHLRTGRRGE |
Ga0187883_101439641 | 3300018037 | Peatland | MFVGRLTQATLRALDWLAVKTLSPEDIPAHQLTGR |
Ga0187890_104592202 | 3300018044 | Peatland | MFAGRLTQATLRALDWLAARTLPPENMPAHQRTGRRGEEDAYFYL |
Ga0187858_106610421 | 3300018057 | Peatland | MFAGRLTQATIRALDWLAARTLSAEDLPAHQRTGRRGEEDAYF |
Ga0187771_100571863 | 3300018088 | Tropical Peatland | MSSGRITHAAIRALDWLAEHTLPPANLPMHQRIGRRGEDDAYFYLR |
Ga0210399_113177571 | 3300020581 | Soil | VSSGRLTHAAVRALDWLGERTLPQREGPAHQRTGRRGEEDAYFHLR |
Ga0210397_109985051 | 3300021403 | Soil | MLSGFSGRVTQIAVRALDWVAERTLGPEGVPAHQKTGRRG |
Ga0210384_108711332 | 3300021432 | Soil | MFSGRLTHATIRALDWLAQLTLKDSKAPAHLQTGRKGEEDTYFFLR |
Ga0210390_100359381 | 3300021474 | Soil | MSITFPGRFTQAAVRALDWVAERTLPAEDIPAHQRTGRRGEEAAYFY |
Ga0210398_113367691 | 3300021477 | Soil | MSITFSGRFTQAAVRALDWVAERTLPAEDIPAHQRTGRRGE |
Ga0212123_1000097246 | 3300022557 | Iron-Sulfur Acid Spring | MFAGRLTQATICALDWLAARTLSPEDMPAHPRTGRRGEGDAYCYLRRRGYTIIARN |
Ga0224557_12637052 | 3300023101 | Soil | MFAGRLTQATLRALDWLAARTLSPEEMPAHQRTGRRGE |
Ga0208455_10558882 | 3300025453 | Peatland | MGFSMFAGRLTQATVHALDWLAARTLAEEDLPAHQRTGRRGEEDAYFYLSPAGL |
Ga0208937_10155971 | 3300025506 | Peatland | MGFPMFAGRLTQATIRALDWLAARTLAAEDLPAHQLTGRRGEEDA |
Ga0208188_10263531 | 3300025507 | Peatland | MGFPMFAGRLTQATIRALDWLAARTLPAEDLPAHQRTGRRGEEDAYFYL |
Ga0208188_10988042 | 3300025507 | Peatland | MFAGRLTQATIRALDWLAARTLAAEDLPAHQLTGRRGEEDAYFYLR |
Ga0207693_114470432 | 3300025915 | Corn, Switchgrass And Miscanthus Rhizosphere | VFTGRLTQVTVRALEWLDAHLLRPEDLPAHQRTGRRGEEYAY |
Ga0209153_12469042 | 3300026312 | Soil | MSSGRLTHATIRALDWLSGKTLPGSTGPAHQRIGRHGEEDAYFFLRKLGY |
Ga0209376_12543031 | 3300026540 | Soil | MSSGRLTHATIRALDWLSGKTLPGSTGPAHQRIGRHGEEDAYFFLRKLGYVMV |
Ga0179587_102849652 | 3300026557 | Vadose Zone Soil | MFAGRLTQATLRALDWLTARTLSPEDIPAHQRTGRRGEEDAY |
Ga0208043_11217703 | 3300027570 | Peatlands Soil | MGFSMFAGRLTQATLRALDWLSARTLSPEDSPAHQRTGRRGEEDAYFY |
Ga0209221_11774172 | 3300027609 | Forest Soil | MFSASSLSGFSGRITQATVRALDWIAERTLPAENIPAHQRTGRRGEEAAYFYLRR |
Ga0209420_11681942 | 3300027648 | Forest Soil | VLSGRTTQASLRALDWLAALILQPDKSPPHQLTGRRGEIDL |
Ga0209333_10916381 | 3300027676 | Forest Soil | MFAGRLTQATLRVLDWLAQRTLPPEDLPEHQRTGRRGEEDAYFYLR |
Ga0209040_102096912 | 3300027824 | Bog Forest Soil | MSSGRLTHATVRAIDWLAVHTLPAEKTPEHQRTGRR |
Ga0209180_104920591 | 3300027846 | Vadose Zone Soil | MSSGRLTHATMRALDWLSGKTLPGSTGPAHQRIGRHGEEDAYF |
Ga0209517_105691171 | 3300027854 | Peatlands Soil | MLSGRLTHATIRALDWLAARTLPSEKGPAHQQTGRRGERDAYFYL |
Ga0302161_100248081 | 3300028674 | Fen | MGVVCSMFPGRLTQATLRGFDWLSNRLLPPDDRPEHQRTGRRGEEDAYFYLRRR |
Ga0247275_11298331 | 3300029817 | Soil | MGLYMFAGRLTHAALRALDWLAAKTLSPEDTPAHQRTG |
Ga0311333_120208261 | 3300030114 | Fen | MFGGRITQVTLRALDWLAARSLPPENMPAHQRTGRRGEEEAY |
Ga0302183_102716392 | 3300030509 | Palsa | MFAGRLTQAALRALDWLASRTLSPEDLPAHRITGRRGEE |
Ga0302275_101682573 | 3300030518 | Bog | MFAGRLTQTAIRALNWLAAKTLSPEDLPPHQLTGRRGEE |
Ga0265762_11039961 | 3300030760 | Soil | MLAGRLTQATLHVLDWFAAKLLPPEDIPAHQRTGRRGE |
Ga0073998_116083202 | 3300031023 | Soil | MFAGPLTQATIRALDWLAARTLSPEVMPAHQRTGRRGEGDAYFYLRRLKNLTLNKN |
Ga0265325_101636072 | 3300031241 | Rhizosphere | MFAGRLTQFTVRVLDWLLSARNVQSPDTPEHLRTGQRGEEDAYFYLRR |
Ga0335085_118163071 | 3300032770 | Soil | MLSGRFTHATIRALDWLAARLLPPSNLPLHQRIGKRGE |
Ga0335078_117837551 | 3300032805 | Soil | MLSGRLTHATVRALDWLAGHMLPADNRPEHQRTGKRGEEDAYFFFRRRGYVMVG |
Ga0335076_114772842 | 3300032955 | Soil | MRSGALTQATLRCLDWLAAKTLNPDASPGHQRTGRRGE |
Ga0335084_120297491 | 3300033004 | Soil | MLSGRFTHATIRALDWLAARLLPPSNLPLHQRIGKRGEEDAHFYLRRCGYV |
Ga0326728_111059611 | 3300033402 | Peat Soil | MFAGRLTQATLRALDWLAARTLAPEDMPAHQRTGRRGEEDA |
Ga0314865_219366_2_142 | 3300033806 | Peatland | MFSGHLTQAVLRALDWIAAKTLPPEEAAEHLQTGRRGEEDAYFYLRR |
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