NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F105672

Metagenome / Metatranscriptome Family F105672

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F105672
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 44 residues
Representative Sequence MFAGRLTQATLRALDWLAAKTLSPEDGPAHQRTGRRGEEDAY
Number of Associated Samples 94
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 100.00 %
% of genes near scaffold ends (potentially truncated) 0.00 %
% of genes from short scaffolds (< 2000 bps) 0.00 %
Associated GOLD sequencing projects 90
AlphaFold2 3D model prediction Yes
3D model pTM-score0.39

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (99.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(13.000 % of family members)
Environment Ontology (ENVO) Unclassified
(33.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(44.000 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.
1JGI12703J13194_1067622
2JGI12635J15846_102016962
3JGI25384J37096_100286541
4JGI25389J43894_10507182
5JGIcombinedJ51221_104117712
6Ga0062386_1004367413
7Ga0062388_1026376073
8Ga0066677_108344512
9Ga0070708_1003133124
10Ga0066689_108686791
11Ga0070707_1010977163
12Ga0070707_1016769101
13Ga0070699_1005199744
14Ga0066692_103842822
15Ga0066699_112194051
16Ga0066795_101772952
17Ga0075029_1002766831
18Ga0075014_1005458881
19Ga0070712_1011449271
20Ga0073928_1000797211
21Ga0116222_12542902
22Ga0116133_10236554
23Ga0116119_11113931
24Ga0116118_10777683
25Ga0116121_12051881
26Ga0116216_107357311
27Ga0116131_12245171
28Ga0116223_103056251
29Ga0116223_107999161
30Ga0116223_108417432
31Ga0127489_11622061
32Ga0074045_109086071
33Ga0134126_110167871
34Ga0126383_1000006635
35Ga0137393_102256373
36Ga0137377_106420761
37Ga0137390_107364861
38Ga0137397_112533831
39Ga0137396_111938152
40Ga0137394_109090921
41Ga0137413_105581231
42Ga0137419_105306571
43Ga0137416_110160691
44Ga0134076_100165411
45Ga0181530_101140491
46Ga0182018_101017491
47Ga0182011_107619812
48Ga0137409_101292013
49Ga0137409_104885971
50Ga0187818_100771141
51Ga0187853_102629981
52Ga0187808_104906222
53Ga0187779_109281341
54Ga0187782_102718851
55Ga0187878_13625661
56Ga0187804_102423972
57Ga0187804_104755361
58Ga0187884_103400502
59Ga0187873_13781691
60Ga0187864_104837811
61Ga0187883_101439641
62Ga0187890_104592202
63Ga0187858_106610421
64Ga0187771_100571863
65Ga0210399_113177571
66Ga0210397_109985051
67Ga0210384_108711332
68Ga0210390_100359381
69Ga0210398_113367691
70Ga0212123_1000097246
71Ga0224557_12637052
72Ga0208455_10558882
73Ga0208937_10155971
74Ga0208188_10263531
75Ga0208188_10988042
76Ga0207693_114470432
77Ga0209153_12469042
78Ga0209376_12543031
79Ga0179587_102849652
80Ga0208043_11217703
81Ga0209221_11774172
82Ga0209420_11681942
83Ga0209333_10916381
84Ga0209040_102096912
85Ga0209180_104920591
86Ga0209517_105691171
87Ga0302161_100248081
88Ga0247275_11298331
89Ga0311333_120208261
90Ga0302183_102716392
91Ga0302275_101682573
92Ga0265762_11039961
93Ga0073998_116083202
94Ga0265325_101636072
95Ga0335085_118163071
96Ga0335078_117837551
97Ga0335076_114772842
98Ga0335084_120297491
99Ga0326728_111059611
100Ga0314865_219366_2_142
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 42.86%    β-sheet: 0.00%    Coil/Unstructured: 57.14%
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Variant

510152025303540MFAGRLTQATLRALDWLAAKTLSPEDGPAHQRTGRRGEEDAYSequenceα-helicesβ-strandsCoilSS Conf. scoreDisordered Regions
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.39
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
99.0%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Peatland
Bog Forest Soil
Bog
Peatland
Freshwater Sediment
Iron-Sulfur Acid Spring
Watersheds
Soil
Soil
Vadose Zone Soil
Terrestrial Soil
Tropical Forest Soil
Grasslands Soil
Peatlands Soil
Soil
Grasslands Soil
Soil
Soil
Peatland
Tropical Peatland
Bog Forest Soil
Fen
Soil
Palsa
Soil
Forest Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Soil
Fen
Palsa
Bog
Peat Soil
Rhizosphere
8.0%3.0%9.0%4.0%13.0%7.0%5.0%6.0%4.0%3.0%6.0%6.0%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12703J13194_10676223300001100Forest SoilMLAGRFTQVTLHVLDWLAAKMLRPEDIPARHRTGRR
JGI12635J15846_1020169623300001593Forest SoilMSGGRITQVTLRALDWLAATVLSPEDIPAHQRTGRRGEEDAYF
JGI25384J37096_1002865413300002561Grasslands SoilMSSGRLTHATIRALDWLSGKTLPGSTGPAHQRIGRHGEEDAYFF
JGI25389J43894_105071823300002916Grasslands SoilMSSGRLTHATMRALDWLSGKTLPGSTGPAHQRIGRHGEEDAYFF
JGIcombinedJ51221_1041177123300003505Forest SoilMFAARLTQATLRALDWLTRRTLPPEDLPEHQLTGRHGEED
Ga0062386_10043674133300004152Bog Forest SoilMSSGRLTHATVRAIDWLAVHTLPAEKTPEHQRTGRRGEEDAYFFLRRRGY
Ga0062388_10263760733300004635Bog Forest SoilMFAGRLTQATLRALDWLAAKTLSPEDGPAHQRTGRRGEEDAY
Ga0066677_1083445123300005171SoilMSSGRLTHATMRALDWLSGKTLPGSTGPAHQRIGRHGEEDAYFFLRKLGYV
Ga0070708_10031331243300005445Corn, Switchgrass And Miscanthus RhizosphereVLTGRLTHATIRALDWLAHRTLPADKKDKHPEHQRTGRRGEEDAYFHLRKLG
Ga0066689_1086867913300005447SoilMSSGRLTHATIRALDWLSGKTLPGSTGPAHQRIGRHGEEDAYFFLRKLGYV
Ga0070707_10109771633300005468Corn, Switchgrass And Miscanthus RhizosphereMFSGRLTHATIRALDWLAGKTLPRSTGPAHQGIGRHGEEDAY
Ga0070707_10167691013300005468Corn, Switchgrass And Miscanthus RhizosphereMFAGRLTQATLRALDWLAGHTLPPDDLPAHQRTGRRGEEAAYFYL
Ga0070699_10051997443300005518Corn, Switchgrass And Miscanthus RhizosphereMLSGRLTHATIRALDWLSGKTLPGSIGPAHQRIGRHGEEDAYFHLRKLGY
Ga0066692_1038428223300005555SoilMFAGRLTQATLRALDWLAARTLSPDDTPAHLRIGRR
Ga0066699_1121940513300005561SoilMFAGRLTQATLRALDWLAARTLSPEDVPTHQRTGRRGEEDAYFYL
Ga0066795_1017729523300005938SoilMFAGRLTQVTLRALDWLAAKTLSPEDTPAHQRTGRR
Ga0075029_10027668313300006052WatershedsMFAGRLTQATVYVLDWLADRTLPPEEMPAHQRTGRRGEEDAYFYLRRRG
Ga0075014_10054588813300006174WatershedsMLAGRLTQATLRALDWLAAITLPPDDSPAHQLIGRLGEEHAYF
Ga0070712_10114492713300006175Corn, Switchgrass And Miscanthus RhizosphereMLAGRFTQVTLRALDWFAARMLSPEDIPAHQRTGRRG
Ga0073928_10007972113300006893Iron-Sulfur Acid SpringMFAGRLTQATICALDWLAARTLSPEDMPAHPRTGRRGEGDAYCYLRRRGYTIIARN*
Ga0116222_125429023300009521Peatlands SoilMSSGRLTHATIHAFDWLAERTLPPEKIPPHQRTGRRGEEAAYFHLRKNGYVM
Ga0116133_102365543300009623PeatlandMEPSMFAGRLTQATLHILDWLAAKMLSPEEMPVHQR
Ga0116119_111139313300009629PeatlandMFAGRLTQVTLRALDWLAAITLPPEDLPAHQRTGRRGEEDAYFY
Ga0116118_107776833300009637PeatlandMFAGRLTQATIRALDWLAARTLAEEDLPAHQRTGRRGEE
Ga0116121_120518813300009644PeatlandMGFSMFAGRLTQATVHALDWLAARTLAEEDLPAHQRTGRRGEEDAYFYLS
Ga0116216_1073573113300009698Peatlands SoilMGFSMFAGRLAQATVRALDWLAARTLAAEDLPAHQRTGRRGEEDA
Ga0116131_122451713300009760PeatlandMFAGRLTAGTLRALDWLAARTLPPEDLPAHHLTGRRGEEDAYFYLR
Ga0116223_1030562513300009839Peatlands SoilMFSGRLTQATLRALDWLTERTLSPEDIPANQRTGRRGEEDAYFYLRGNILRRKRS
Ga0116223_1079991613300009839Peatlands SoilMLTGFSGRVTQAAVRALDWVAERTLAPEDIPRHQRTGRRGEEDAYFYLRR
Ga0116223_1084174323300009839Peatlands SoilMGFLMFAGRLTQATLRALDWLAARTLSAEDLPAHQLTGPRGEE
Ga0127489_116220613300010127Grasslands SoilMLSGRLTHATIRALDWLAGKTLPGSTGPAHQRIGRHGEEDAYFHL
Ga0074045_1090860713300010341Bog Forest SoilMPNIFSGRLTQAAVRALDWVAERTLPAEDIPMHQRT
Ga0134126_1101678713300010396Terrestrial SoilMPSGRLTHAAIRTLDWLAAKTLSPENIPPHQRTGRAGEEAAYFYLR
Ga0126383_10000066353300010398Tropical Forest SoilMLPGSLVQATLRALDWVADRTLLPSNLPEHHRTGRQGEEDAYFYLR*
Ga0137393_1022563733300011271Vadose Zone SoilMSGRFTHATIRLLDWLTEMTLPATAVPEHQVTGRRGEEGAYFYLRKRG*
Ga0137377_1064207613300012211Vadose Zone SoilMEFSMFAGRLTQATLRALDWLAARTLSPEDMPAHQRTGRRGEEDA
Ga0137390_1073648613300012363Vadose Zone SoilMFAGRLTQATLRALDWLAARTLSPEDTPAHQRTGRR
Ga0137397_1125338313300012685Vadose Zone SoilMFAGRLTQATVRALDWLATKTLSAEDIPAHHVIGRRGEEDAYFYL
Ga0137396_1119381523300012918Vadose Zone SoilMLAGRFTHATIRALDWLAERTLPAEKIPDRHRTGRRGEEDAYFHLRKLG
Ga0137394_1090909213300012922Vadose Zone SoilMFAGRLTQATLRALDWLAGRTLPPDDLPPHQRTGRRGEE
Ga0137413_1055812313300012924Vadose Zone SoilMFSGRVTQATLRALDWLAAHTVAPENLPPHQLTGRRGEEA
Ga0137419_1053065713300012925Vadose Zone SoilMFAGHLTQVTLRALDWLAARTLAPEDLPAHQRTGRRGEEDA
Ga0137416_1101606913300012927Vadose Zone SoilMFAGRLTQVTLRALDWLAARTLTAEDMPAHQRTGRRG
Ga0134076_1001654113300012976Grasslands SoilMLSGRLTHATIRALDWLAGKTLPGSTGPAHQRIGHHGEEDAYFHLRKLGYVM
Ga0181530_1011404913300014159BogMGFSMFAGRLTQATIRALDWLAARTLSAEDLPAHQRTGRRGEEDAY
Ga0182018_1010174913300014489PalsaLSSGRLTHAAIRALDWISARVLPPEKIPAHQLTGRRGEEA
Ga0182011_1076198123300014496FenMGFSMFAGRLTQVTLRTLDWLAARTLPPEDIPAHQRTGRRGRILGYRPGC
Ga0137409_1012920133300015245Vadose Zone SoilMSGGRVTQTTLRALDWLARHTLQAENVPPHQLTGRRGEEDAYFFLRRKGYVIIAR
Ga0137409_1048859713300015245Vadose Zone SoilMFAGRLTQVTVRALDWLASHTLPPEAGPPHQRTGRRGE
Ga0187818_1007711413300017823Freshwater SedimentMLAGRLTQATLHALDWVSDRTLPRERTPAHQRTGRRGEEDAY
Ga0187853_1026299813300017940PeatlandMGLYMFAGRLTHAALRALDWLAAKTLSPEDTPAHQRTGRRGEEDAYFYL
Ga0187808_1049062223300017942Freshwater SedimentMSSGRFTHAAIRALDWLAGRTLPRDTRPEHQRVGKRGEEDAYFYLR
Ga0187779_1092813413300017959Tropical PeatlandMFAGRLTHATLRVLDWLAARTLAPEDAPPHQLTGRRG
Ga0187782_1027188513300017975Tropical PeatlandMSSGRLTHAAVRALDWLAEHTLPPDHRPEHQRTGRRGEDDA
Ga0187878_136256613300018005PeatlandMFTGRLTQATLRALDWLAAKTLSPEDMPAHQRTGRRGEE
Ga0187804_1024239723300018006Freshwater SedimentMFAGSLTQATLRALDWLSEKALPPDKTAEHLRTGRRGEEDAYFYL
Ga0187804_1047553613300018006Freshwater SedimentMFAGRLTQATVRAFDWVANRTLPPEEMPAHQRTGR
Ga0187884_1034005023300018009PeatlandMFAGRLTQATLRALDWLAAKTLPAEDIPAHQRTGRRG
Ga0187873_137816913300018013PeatlandMFAGRLTQATLRALDWLAAKTLPAEDIPAHQRTGRRGEEDAYF
Ga0187864_1048378113300018022PeatlandMFAGRLTQATLRALDWLAGKTLSPEDTPAHLRTGRRGE
Ga0187883_1014396413300018037PeatlandMFVGRLTQATLRALDWLAVKTLSPEDIPAHQLTGR
Ga0187890_1045922023300018044PeatlandMFAGRLTQATLRALDWLAARTLPPENMPAHQRTGRRGEEDAYFYL
Ga0187858_1066104213300018057PeatlandMFAGRLTQATIRALDWLAARTLSAEDLPAHQRTGRRGEEDAYF
Ga0187771_1005718633300018088Tropical PeatlandMSSGRITHAAIRALDWLAEHTLPPANLPMHQRIGRRGEDDAYFYLR
Ga0210399_1131775713300020581SoilVSSGRLTHAAVRALDWLGERTLPQREGPAHQRTGRRGEEDAYFHLR
Ga0210397_1099850513300021403SoilMLSGFSGRVTQIAVRALDWVAERTLGPEGVPAHQKTGRRG
Ga0210384_1087113323300021432SoilMFSGRLTHATIRALDWLAQLTLKDSKAPAHLQTGRKGEEDTYFFLR
Ga0210390_1003593813300021474SoilMSITFPGRFTQAAVRALDWVAERTLPAEDIPAHQRTGRRGEEAAYFY
Ga0210398_1133676913300021477SoilMSITFSGRFTQAAVRALDWVAERTLPAEDIPAHQRTGRRGE
Ga0212123_10000972463300022557Iron-Sulfur Acid SpringMFAGRLTQATICALDWLAARTLSPEDMPAHPRTGRRGEGDAYCYLRRRGYTIIARN
Ga0224557_126370523300023101SoilMFAGRLTQATLRALDWLAARTLSPEEMPAHQRTGRRGE
Ga0208455_105588823300025453PeatlandMGFSMFAGRLTQATVHALDWLAARTLAEEDLPAHQRTGRRGEEDAYFYLSPAGL
Ga0208937_101559713300025506PeatlandMGFPMFAGRLTQATIRALDWLAARTLAAEDLPAHQLTGRRGEEDA
Ga0208188_102635313300025507PeatlandMGFPMFAGRLTQATIRALDWLAARTLPAEDLPAHQRTGRRGEEDAYFYL
Ga0208188_109880423300025507PeatlandMFAGRLTQATIRALDWLAARTLAAEDLPAHQLTGRRGEEDAYFYLR
Ga0207693_1144704323300025915Corn, Switchgrass And Miscanthus RhizosphereVFTGRLTQVTVRALEWLDAHLLRPEDLPAHQRTGRRGEEYAY
Ga0209153_124690423300026312SoilMSSGRLTHATIRALDWLSGKTLPGSTGPAHQRIGRHGEEDAYFFLRKLGY
Ga0209376_125430313300026540SoilMSSGRLTHATIRALDWLSGKTLPGSTGPAHQRIGRHGEEDAYFFLRKLGYVMV
Ga0179587_1028496523300026557Vadose Zone SoilMFAGRLTQATLRALDWLTARTLSPEDIPAHQRTGRRGEEDAY
Ga0208043_112177033300027570Peatlands SoilMGFSMFAGRLTQATLRALDWLSARTLSPEDSPAHQRTGRRGEEDAYFY
Ga0209221_117741723300027609Forest SoilMFSASSLSGFSGRITQATVRALDWIAERTLPAENIPAHQRTGRRGEEAAYFYLRR
Ga0209420_116819423300027648Forest SoilVLSGRTTQASLRALDWLAALILQPDKSPPHQLTGRRGEIDL
Ga0209333_109163813300027676Forest SoilMFAGRLTQATLRVLDWLAQRTLPPEDLPEHQRTGRRGEEDAYFYLR
Ga0209040_1020969123300027824Bog Forest SoilMSSGRLTHATVRAIDWLAVHTLPAEKTPEHQRTGRR
Ga0209180_1049205913300027846Vadose Zone SoilMSSGRLTHATMRALDWLSGKTLPGSTGPAHQRIGRHGEEDAYF
Ga0209517_1056911713300027854Peatlands SoilMLSGRLTHATIRALDWLAARTLPSEKGPAHQQTGRRGERDAYFYL
Ga0302161_1002480813300028674FenMGVVCSMFPGRLTQATLRGFDWLSNRLLPPDDRPEHQRTGRRGEEDAYFYLRRR
Ga0247275_112983313300029817SoilMGLYMFAGRLTHAALRALDWLAAKTLSPEDTPAHQRTG
Ga0311333_1202082613300030114FenMFGGRITQVTLRALDWLAARSLPPENMPAHQRTGRRGEEEAY
Ga0302183_1027163923300030509PalsaMFAGRLTQAALRALDWLASRTLSPEDLPAHRITGRRGEE
Ga0302275_1016825733300030518BogMFAGRLTQTAIRALNWLAAKTLSPEDLPPHQLTGRRGEE
Ga0265762_110399613300030760SoilMLAGRLTQATLHVLDWFAAKLLPPEDIPAHQRTGRRGE
Ga0073998_1160832023300031023SoilMFAGPLTQATIRALDWLAARTLSPEVMPAHQRTGRRGEGDAYFYLRRLKNLTLNKN
Ga0265325_1016360723300031241RhizosphereMFAGRLTQFTVRVLDWLLSARNVQSPDTPEHLRTGQRGEEDAYFYLRR
Ga0335085_1181630713300032770SoilMLSGRFTHATIRALDWLAARLLPPSNLPLHQRIGKRGE
Ga0335078_1178375513300032805SoilMLSGRLTHATVRALDWLAGHMLPADNRPEHQRTGKRGEEDAYFFFRRRGYVMVG
Ga0335076_1147728423300032955SoilMRSGALTQATLRCLDWLAAKTLNPDASPGHQRTGRRGE
Ga0335084_1202974913300033004SoilMLSGRFTHATIRALDWLAARLLPPSNLPLHQRIGKRGEEDAHFYLRRCGYV
Ga0326728_1110596113300033402Peat SoilMFAGRLTQATLRALDWLAARTLAPEDMPAHQRTGRRGEEDA
Ga0314865_219366_2_1423300033806PeatlandMFSGHLTQAVLRALDWIAAKTLPPEEAAEHLQTGRRGEEDAYFYLRR


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