Basic Information | |
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Family ID | F105587 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 100 |
Average Sequence Length | 67 residues |
Representative Sequence | MNIANSRSYPDATRLAELVQKIRVLKLDLSRIIEHSRNSKVGSRLIMASGLLDGALEELSKAASEQSD |
Number of Associated Samples | 57 |
Number of Associated Scaffolds | 100 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 77.00 % |
% of genes near scaffold ends (potentially truncated) | 22.00 % |
% of genes from short scaffolds (< 2000 bps) | 64.00 % |
Associated GOLD sequencing projects | 48 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.66 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (50.000 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil (26.000 % of family members) |
Environment Ontology (ENVO) | Unclassified (46.000 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (81.000 % of family members) |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 56.25% β-sheet: 0.00% Coil/Unstructured: 43.75% | Feature Viewer |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.66 |
Powered by PDBe Molstar |
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Pfam ID | Name | % Frequency in 100 Family Scaffolds |
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PF12844 | HTH_19 | 8.00 |
PF00072 | Response_reg | 8.00 |
PF11941 | DUF3459 | 3.00 |
PF04545 | Sigma70_r4 | 3.00 |
PF07519 | Tannase | 3.00 |
PF07238 | PilZ | 2.00 |
PF01381 | HTH_3 | 2.00 |
PF13560 | HTH_31 | 2.00 |
PF03466 | LysR_substrate | 1.00 |
PF13442 | Cytochrome_CBB3 | 1.00 |
PF00510 | COX3 | 1.00 |
PF04366 | Ysc84 | 1.00 |
PF08240 | ADH_N | 1.00 |
PF02518 | HATPase_c | 1.00 |
PF13690 | CheX | 1.00 |
PF02735 | Ku | 1.00 |
PF07589 | PEP-CTERM | 1.00 |
PF03707 | MHYT | 1.00 |
PF13384 | HTH_23 | 1.00 |
PF00589 | Phage_integrase | 1.00 |
PF02661 | Fic | 1.00 |
PF04972 | BON | 1.00 |
PF13620 | CarboxypepD_reg | 1.00 |
PF00486 | Trans_reg_C | 1.00 |
PF04454 | Linocin_M18 | 1.00 |
PF13435 | Cytochrome_C554 | 1.00 |
PF01493 | GXGXG | 1.00 |
COG ID | Name | Functional Category | % Frequency in 100 Family Scaffolds |
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COG1273 | Non-homologous end joining protein Ku, dsDNA break repair | Replication, recombination and repair [L] | 1.00 |
COG1845 | Heme/copper-type cytochrome/quinol oxidase, subunit 3 | Energy production and conversion [C] | 1.00 |
COG2930 | Lipid-binding SYLF domain, Ysc84/FYVE family | Lipid transport and metabolism [I] | 1.00 |
COG3300 | MHYT domain, NO-binding membrane sensor | Signal transduction mechanisms [T] | 1.00 |
COG5001 | Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain | Signal transduction mechanisms [T] | 1.00 |
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Name | Rank | Taxonomy | Distribution |
All Organisms | root | All Organisms | 50.00 % |
Unclassified | root | N/A | 50.00 % |
Visualization |
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Powered by ApexCharts |
Scaffold | Taxonomy | Length | IMG/M Link |
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3300001082|JGI12664J13189_1001811 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 2473 | Open in IMG/M |
3300001082|JGI12664J13189_1004508 | Not Available | 1091 | Open in IMG/M |
3300001124|JGI12692J13336_1005787 | Not Available | 657 | Open in IMG/M |
3300001151|JGI12713J13577_1000040 | All Organisms → cellular organisms → Bacteria | 41011 | Open in IMG/M |
3300001175|JGI12649J13570_1002209 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | 2979 | Open in IMG/M |
3300001175|JGI12649J13570_1018942 | Not Available | 750 | Open in IMG/M |
3300001593|JGI12635J15846_10013383 | All Organisms → cellular organisms → Bacteria | 6866 | Open in IMG/M |
3300001593|JGI12635J15846_10017931 | All Organisms → cellular organisms → Bacteria | 5865 | Open in IMG/M |
3300001593|JGI12635J15846_10022174 | Not Available | 5197 | Open in IMG/M |
3300001593|JGI12635J15846_10046938 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa → Acidicapsa acidisoli | 3320 | Open in IMG/M |
3300001593|JGI12635J15846_10065609 | All Organisms → cellular organisms → Bacteria | 2705 | Open in IMG/M |
3300002245|JGIcombinedJ26739_100246036 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 1677 | Open in IMG/M |
3300002245|JGIcombinedJ26739_100515026 | Not Available | 1073 | Open in IMG/M |
3300003505|JGIcombinedJ51221_10047530 | All Organisms → cellular organisms → Bacteria | 1620 | Open in IMG/M |
3300003505|JGIcombinedJ51221_10097821 | All Organisms → cellular organisms → Bacteria | 1165 | Open in IMG/M |
3300004082|Ga0062384_100357666 | Not Available | 927 | Open in IMG/M |
3300004082|Ga0062384_100471404 | Not Available | 825 | Open in IMG/M |
3300004082|Ga0062384_100815241 | Not Available | 653 | Open in IMG/M |
3300004091|Ga0062387_100001102 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 6725 | Open in IMG/M |
3300004092|Ga0062389_100934538 | Not Available | 1051 | Open in IMG/M |
3300004120|Ga0058901_1546133 | All Organisms → cellular organisms → Bacteria | 1626 | Open in IMG/M |
3300005591|Ga0070761_10001909 | All Organisms → cellular organisms → Bacteria | 12993 | Open in IMG/M |
3300005591|Ga0070761_10437616 | Not Available | 801 | Open in IMG/M |
3300005591|Ga0070761_10489998 | Not Available | 757 | Open in IMG/M |
3300005591|Ga0070761_10790911 | Not Available | 597 | Open in IMG/M |
3300005591|Ga0070761_10955383 | Not Available | 543 | Open in IMG/M |
3300005602|Ga0070762_10005165 | All Organisms → cellular organisms → Bacteria | 6310 | Open in IMG/M |
3300005602|Ga0070762_10970102 | Not Available | 582 | Open in IMG/M |
3300005602|Ga0070762_11289355 | Not Available | 507 | Open in IMG/M |
3300005610|Ga0070763_10009668 | All Organisms → cellular organisms → Bacteria | 3925 | Open in IMG/M |
3300005610|Ga0070763_10589887 | Not Available | 643 | Open in IMG/M |
3300005712|Ga0070764_10132994 | Not Available | 1355 | Open in IMG/M |
3300005712|Ga0070764_10682272 | Not Available | 632 | Open in IMG/M |
3300006176|Ga0070765_100191626 | All Organisms → cellular organisms → Bacteria | 1851 | Open in IMG/M |
3300006176|Ga0070765_100456832 | Not Available | 1197 | Open in IMG/M |
3300006176|Ga0070765_101056943 | Not Available | 767 | Open in IMG/M |
3300006176|Ga0070765_101875037 | Not Available | 562 | Open in IMG/M |
3300009518|Ga0116128_1139304 | Not Available | 698 | Open in IMG/M |
3300009547|Ga0116136_1182795 | Not Available | 525 | Open in IMG/M |
3300009623|Ga0116133_1006584 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 2911 | Open in IMG/M |
3300009623|Ga0116133_1020506 | All Organisms → cellular organisms → Bacteria | 1636 | Open in IMG/M |
3300009624|Ga0116105_1000055 | All Organisms → cellular organisms → Bacteria | 42358 | Open in IMG/M |
3300009624|Ga0116105_1179744 | Not Available | 574 | Open in IMG/M |
3300009762|Ga0116130_1078213 | Not Available | 1038 | Open in IMG/M |
3300014489|Ga0182018_10062943 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 2237 | Open in IMG/M |
3300014489|Ga0182018_10169549 | Not Available | 1237 | Open in IMG/M |
3300017925|Ga0187856_1336312 | Not Available | 513 | Open in IMG/M |
3300018013|Ga0187873_1059391 | All Organisms → cellular organisms → Bacteria | 1617 | Open in IMG/M |
3300018042|Ga0187871_10021114 | All Organisms → cellular organisms → Bacteria | 4204 | Open in IMG/M |
3300019258|Ga0181504_1332771 | All Organisms → cellular organisms → Bacteria | 1781 | Open in IMG/M |
3300019260|Ga0181506_1318699 | Not Available | 1142 | Open in IMG/M |
3300020580|Ga0210403_10038650 | All Organisms → cellular organisms → Bacteria | 3815 | Open in IMG/M |
3300020582|Ga0210395_10884297 | Not Available | 664 | Open in IMG/M |
3300020583|Ga0210401_10172043 | All Organisms → cellular organisms → Bacteria | 2020 | Open in IMG/M |
3300020583|Ga0210401_10341256 | All Organisms → cellular organisms → Bacteria | 1359 | Open in IMG/M |
3300021171|Ga0210405_10000070 | All Organisms → cellular organisms → Bacteria | 133501 | Open in IMG/M |
3300021181|Ga0210388_10035419 | All Organisms → cellular organisms → Bacteria | 4121 | Open in IMG/M |
3300021181|Ga0210388_10049273 | Not Available | 3508 | Open in IMG/M |
3300021181|Ga0210388_10137445 | All Organisms → cellular organisms → Bacteria | 2116 | Open in IMG/M |
3300021181|Ga0210388_10223605 | All Organisms → cellular organisms → Bacteria | 1650 | Open in IMG/M |
3300021181|Ga0210388_10569496 | Not Available | 992 | Open in IMG/M |
3300021181|Ga0210388_10841338 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 793 | Open in IMG/M |
3300021401|Ga0210393_10112232 | All Organisms → cellular organisms → Bacteria | 2175 | Open in IMG/M |
3300021401|Ga0210393_10196878 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 1628 | Open in IMG/M |
3300021401|Ga0210393_10650395 | Not Available | 860 | Open in IMG/M |
3300021401|Ga0210393_11367437 | Not Available | 566 | Open in IMG/M |
3300021405|Ga0210387_10001310 | All Organisms → cellular organisms → Bacteria | 18706 | Open in IMG/M |
3300021406|Ga0210386_11002937 | Not Available | 712 | Open in IMG/M |
3300021407|Ga0210383_10390608 | Not Available | 1200 | Open in IMG/M |
3300021432|Ga0210384_10242069 | All Organisms → cellular organisms → Bacteria | 1624 | Open in IMG/M |
3300021433|Ga0210391_10014631 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 6336 | Open in IMG/M |
3300021433|Ga0210391_10017507 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 5784 | Open in IMG/M |
3300021433|Ga0210391_10025041 | All Organisms → cellular organisms → Bacteria | 4800 | Open in IMG/M |
3300021477|Ga0210398_10115265 | Not Available | 2183 | Open in IMG/M |
3300021559|Ga0210409_10927155 | Not Available | 745 | Open in IMG/M |
3300025406|Ga0208035_1075417 | Not Available | 510 | Open in IMG/M |
3300025412|Ga0208194_1003640 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 2912 | Open in IMG/M |
3300025460|Ga0208562_1109284 | Not Available | 529 | Open in IMG/M |
3300027334|Ga0209529_1001229 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 3551 | Open in IMG/M |
3300027334|Ga0209529_1016643 | Not Available | 1236 | Open in IMG/M |
3300027370|Ga0209010_1004325 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 2988 | Open in IMG/M |
3300027559|Ga0209222_1008954 | Not Available | 2063 | Open in IMG/M |
3300027559|Ga0209222_1030109 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 1051 | Open in IMG/M |
3300027648|Ga0209420_1045355 | Not Available | 1333 | Open in IMG/M |
3300027652|Ga0209007_1042590 | All Organisms → cellular organisms → Bacteria | 1159 | Open in IMG/M |
3300027729|Ga0209248_10091279 | Not Available | 920 | Open in IMG/M |
3300027795|Ga0209139_10006368 | All Organisms → cellular organisms → Bacteria | 4455 | Open in IMG/M |
3300027855|Ga0209693_10289289 | Not Available | 800 | Open in IMG/M |
3300027879|Ga0209169_10598888 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 576 | Open in IMG/M |
3300027889|Ga0209380_10160811 | Not Available | 1314 | Open in IMG/M |
3300027895|Ga0209624_10021961 | All Organisms → cellular organisms → Bacteria | 4042 | Open in IMG/M |
3300027895|Ga0209624_10427304 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 883 | Open in IMG/M |
3300027895|Ga0209624_11045090 | Not Available | 528 | Open in IMG/M |
3300028906|Ga0308309_10954989 | Not Available | 743 | Open in IMG/M |
3300028906|Ga0308309_11368306 | Not Available | 607 | Open in IMG/M |
3300031708|Ga0310686_109357216 | Not Available | 725 | Open in IMG/M |
3300034163|Ga0370515_0009015 | All Organisms → cellular organisms → Bacteria | 4785 | Open in IMG/M |
3300034163|Ga0370515_0022878 | All Organisms → cellular organisms → Bacteria | 2861 | Open in IMG/M |
3300034163|Ga0370515_0051092 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 1822 | Open in IMG/M |
3300034163|Ga0370515_0185656 | Not Available | 888 | Open in IMG/M |
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Habitat | Taxonomy | Distribution |
Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil | 26.00% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 24.00% |
Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil | 21.00% |
Peatland | Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland | 10.00% |
Bog Forest Soil | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil | 7.00% |
Peatland | Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland | 5.00% |
Untreated Peat Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil | 4.00% |
Palsa | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa | 2.00% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 1.00% |
Visualization |
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Taxon OID | Sample Name | Habitat Type | IMG/M Link |
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3300001082 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3 | Environmental | Open in IMG/M |
3300001124 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O3 | Environmental | Open in IMG/M |
3300001151 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3 | Environmental | Open in IMG/M |
3300001175 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 | Environmental | Open in IMG/M |
3300001593 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 | Environmental | Open in IMG/M |
3300002245 | Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027) | Environmental | Open in IMG/M |
3300003505 | Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924) | Environmental | Open in IMG/M |
3300004082 | Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3 | Environmental | Open in IMG/M |
3300004091 | Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3 | Environmental | Open in IMG/M |
3300004092 | Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3 | Environmental | Open in IMG/M |
3300004120 | Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF238 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
3300005591 | Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 | Environmental | Open in IMG/M |
3300005602 | Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 | Environmental | Open in IMG/M |
3300005610 | Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 | Environmental | Open in IMG/M |
3300005712 | Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 | Environmental | Open in IMG/M |
3300006176 | Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 | Environmental | Open in IMG/M |
3300009518 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150 | Environmental | Open in IMG/M |
3300009547 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_40 | Environmental | Open in IMG/M |
3300009623 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10 | Environmental | Open in IMG/M |
3300009624 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10 | Environmental | Open in IMG/M |
3300009762 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_40 | Environmental | Open in IMG/M |
3300014489 | Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG | Environmental | Open in IMG/M |
3300017925 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40 | Environmental | Open in IMG/M |
3300018013 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_100 | Environmental | Open in IMG/M |
3300018042 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10 | Environmental | Open in IMG/M |
3300019258 | Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaT (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
3300019260 | Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaT (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
3300020580 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M | Environmental | Open in IMG/M |
3300020582 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O | Environmental | Open in IMG/M |
3300020583 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M | Environmental | Open in IMG/M |
3300021171 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M | Environmental | Open in IMG/M |
3300021181 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O | Environmental | Open in IMG/M |
3300021401 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O | Environmental | Open in IMG/M |
3300021405 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O | Environmental | Open in IMG/M |
3300021406 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O | Environmental | Open in IMG/M |
3300021407 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O | Environmental | Open in IMG/M |
3300021432 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M | Environmental | Open in IMG/M |
3300021433 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O | Environmental | Open in IMG/M |
3300021477 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O | Environmental | Open in IMG/M |
3300021559 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M | Environmental | Open in IMG/M |
3300025406 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_10 (SPAdes) | Environmental | Open in IMG/M |
3300025412 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10 (SPAdes) | Environmental | Open in IMG/M |
3300025460 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150 (SPAdes) | Environmental | Open in IMG/M |
3300027334 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O2 (SPAdes) | Environmental | Open in IMG/M |
3300027370 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3 (SPAdes) | Environmental | Open in IMG/M |
3300027559 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O3 (SPAdes) | Environmental | Open in IMG/M |
3300027648 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1 (SPAdes) | Environmental | Open in IMG/M |
3300027652 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O2 (SPAdes) | Environmental | Open in IMG/M |
3300027729 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes) | Environmental | Open in IMG/M |
3300027795 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes) | Environmental | Open in IMG/M |
3300027855 | Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes) | Environmental | Open in IMG/M |
3300027879 | Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes) | Environmental | Open in IMG/M |
3300027889 | Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes) | Environmental | Open in IMG/M |
3300027895 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes) | Environmental | Open in IMG/M |
3300028906 | Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2) | Environmental | Open in IMG/M |
3300031708 | FICUS49499 Metagenome Czech Republic combined assembly | Environmental | Open in IMG/M |
3300034163 | Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14 | Environmental | Open in IMG/M |
Geographical Distribution | |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI12664J13189_10018112 | 3300001082 | Forest Soil | MGNAGPRLNPDSTRLAELIQKIRALKLELSRIIEHSRNSEVGSCLIMASGLLDGAIEELSNAKVEQND* |
JGI12664J13189_10045081 | 3300001082 | Forest Soil | MSTAGSRLYPAPALLAELIQKIRVLRLDLSRIIEYSRESKVGSRLIMASGLLDGALEELSKAASEQRD* |
JGI12692J13336_10057872 | 3300001124 | Forest Soil | MSTAGSRSYPDATRLAEIVQKIRVLKLHLSGIIEHSRNSSVVSRLIMASGLLDIAIEE |
JGI12713J13577_100004030 | 3300001151 | Forest Soil | MSTAGSRSYPDATRLAEIVQKIRVLKLHLSGIIEHSRNSSVVSRLIMASGLLDIAIEEISKSVSEAKH* |
JGI12649J13570_10022092 | 3300001175 | Forest Soil | LYPAPALLAELIQKIRVLRLDLSRIIEYSRESKVGSRLIMASGLLDGALEELSKAASEQRD* |
JGI12649J13570_10189421 | 3300001175 | Forest Soil | GNALRQQRGKHMGTAGSSSYSGSARLAELIQKIRILKSDLSGMINRGGNSQVISRLIMASGLLDGALEELSKAASEQKD* |
JGI12635J15846_100133839 | 3300001593 | Forest Soil | MGTAGSSSYSGSARLAELIQKIRILKSDLSGMINRGGNSQVISRLIMASGLLDGALEELSKAASEQKD* |
JGI12635J15846_100179314 | 3300001593 | Forest Soil | MSTAGSRLYPDPALLTELIQKIRVLRSDLGKIIEFSRDSKVGSGLIMASGLLDGALEELSKAASQQRD* |
JGI12635J15846_100221747 | 3300001593 | Forest Soil | MATAGSRSYSGSTRLAELIQKIRILKSDLSGMINHGGNAKVISRLIMASGLLDGALEELSQAVSEQKE* |
JGI12635J15846_100469381 | 3300001593 | Forest Soil | MTISDSRPHPDATHLAELVQKIRVLKLDLRGIMEHNRNSKLISRLIMASGLLDGAIEELSKSVSEAED* |
JGI12635J15846_100656092 | 3300001593 | Forest Soil | MNIANSRSYPDATRLAELVQKIRVLKLDLSRIIEHSRNSKVGSRLIMASGLLDGALEELSKAASEQSD* |
JGIcombinedJ26739_1002460362 | 3300002245 | Forest Soil | MADLRPYPDPTLLYELIQRIRVLRLDLSRIIEHSRSSKVGSRLIMASGLLDGALEELSKAASEQRD* |
JGIcombinedJ26739_1005150262 | 3300002245 | Forest Soil | MDTAGSRLYPDSTRLAELVKKIRVLRLDLSRILQHSRNSHIGSHLIMASGLLDGAIEELSKAQSEQKD* |
JGIcombinedJ51221_100475303 | 3300003505 | Forest Soil | MSTAGSRPYPDPALLAELIQKIRVLRLLLSKILEQSRNSKVDSRLIMASGLLDGAIDELSKAESEQKD* |
JGIcombinedJ51221_100978211 | 3300003505 | Forest Soil | MSTAGSRSYPDSTRLAELVQKIRLLKSDLSGMIEHSRDSKAISRLIMASGLLDGALEELSKAVXEQRD* |
Ga0062384_1003576662 | 3300004082 | Bog Forest Soil | MSIADSRPYPDATRLAELVQKMRLFKSDLKGIIERAHNSKAISRLIMASGLLDGALEELSKAASEK* |
Ga0062384_1004714042 | 3300004082 | Bog Forest Soil | MSTAGSRSYPDSSRLAELVQKIRVLKLDLGRIIERRRNSKVGSRLIMASGLLDGALEELSKAMSEQRDEAIDGDV* |
Ga0062384_1008152412 | 3300004082 | Bog Forest Soil | MSTAASRSYPDPKRLAEVVQKIRVLKLDLSGMIEHSCNSKVGSRLIMASGLLDGALEELSKAGSEQKD* |
Ga0062387_1000011022 | 3300004091 | Bog Forest Soil | MTNAGSRSQPDSVRLAELVQKIRVFKLDLTRIIEHSRNSKGGSRLIMASGLLDGVLEELAKAESELKD* |
Ga0062389_1009345382 | 3300004092 | Bog Forest Soil | MGISDSRPYPDATRLAELVQKMRMFKSDLRRIIERGHSSKAVSRLVMASGLLDGVLEELSKAVSELGD* |
Ga0058901_15461331 | 3300004120 | Forest Soil | RLAELVQKIRLLKSDLSGMIEHSRDSKAISRLIMASGLLDGALEELSKAVWEQRD* |
Ga0070761_1000190914 | 3300005591 | Soil | MSTAGSRSYPDSTRLAELVQKIRLLKSDLSGMIEHSRDSKAISRLIMASGLLDGALEELSKAVSEQRD* |
Ga0070761_104376162 | 3300005591 | Soil | MNIADSKPYPDATLLAELVQKIRVVKLDLSRIIEHSRNSKIGSRLIMASGLLDGALDELSNAASEQKE* |
Ga0070761_104899981 | 3300005591 | Soil | MSTAGSRLDPHPALLAELIQKIRVLRSDLSRIIEYSRDSKVGSGLIMASGLLDGALEELSKAASEQKG* |
Ga0070761_107909112 | 3300005591 | Soil | MSTTGSRLYPDPALLTELIQKIRVLRLDLSRIIEFSRDSKVGSGLIMASGLLDGALEELSKAASQQRD* |
Ga0070761_109553832 | 3300005591 | Soil | MTISDSRPHPDATHLGELVQKIRVLKLDLRGIMEHSPNSKVFSRLIMASGLLDGAIEELSKSVSETKD* |
Ga0070762_100051657 | 3300005602 | Soil | MGNAGPRLSPDSTRLAELIQKIRALKLDLSRIIEYSRNSEVGSCLIMASGLLDGAIEELSNAKEEQND* |
Ga0070762_109701022 | 3300005602 | Soil | MGTAGSSSYSGSIRLAELIQKIRILKSDLSSMINHGGNSKMISRLIMASGLLDGALEELSKAMSEQKD* |
Ga0070762_112893551 | 3300005602 | Soil | MGTAGSRSYFGSTRLAELIQKIRILKSDLSGMINHGGNSKVIARLIMAAGLLDGALEELSQADLEQKE* |
Ga0070763_100096684 | 3300005610 | Soil | MSTAGSRSYPDSTRLAELVQKIRLLKSDLSGMIEHSRDSKAISRLIMASGLLDGALEELSKAVWEQRD* |
Ga0070763_105898872 | 3300005610 | Soil | MSTAGSRSYPDATRLAEIVQNIRILKSHLSGIIEHSRNSNVVSRLIMASGLLDIAIEEISKSVSEAKQ* |
Ga0070764_101329941 | 3300005712 | Soil | MGSAGSRSYSGSTRLAELIQKIRILKSDLSGMISQGGNSKVISRLIMASGLLDGALEELSQAVSEQKE* |
Ga0070764_106822721 | 3300005712 | Soil | MADLRPYPDPTFLYALIQKIRVLRSDLSRIIEHSRSSKVGSRLIMASGLLDGALEELSKAASEQRD* |
Ga0070765_1001916261 | 3300006176 | Soil | ADSKPYPDATLLAELVQKIRVVKLDLSRIIEHSRNSKIGSRLIMASGLLDGALDELSNAASEQKE* |
Ga0070765_1004568322 | 3300006176 | Soil | MNIANSRSYPDATRLAELVQKIRVLKLDLSRIIEHSRDSQVGSRLIMASGLLDGALEELSKAASEQSD* |
Ga0070765_1010569431 | 3300006176 | Soil | MADLRPYPDPTLLTELVQRIRVLRLDLSRIIEHSRSSKVGSRLIMASGLLDGALEELSKAASEQRD* |
Ga0070765_1018750371 | 3300006176 | Soil | MITEESRSNPDSIHLSQLVQKIRILKSDLSGIIKRSHNSDVASRLIMASGLLDGALEELSKALSGRKD* |
Ga0116128_11393041 | 3300009518 | Peatland | SRRYPDATRLAELIQRIRVLKLDLSGMIEHGRNSKAISRLIMASGLLDGALEELSKAASEQRE* |
Ga0116136_11827951 | 3300009547 | Peatland | ETQTGEGSYKIKLCQRQKGDQTSMVDSRPYPDATRLAELVQRIRVLKSDLSGMIEHGRSSKASSRLIMASGLLDGALEELSKAVSEQKD* |
Ga0116133_10065848 | 3300009623 | Peatland | QRQKGDQTSMVDSRPYPDATRLAELVQRIRVLKSDLSGMIEHGRSSKASSRLIMASGLLDGALEELSKAVSEQKD* |
Ga0116133_10205061 | 3300009623 | Peatland | MSTADSRRYPDATRLAELVQRIRVLKLDLSGMIEHGRNSKAISRLIMASGLLDGALEELSKAASEQRE* |
Ga0116105_100005527 | 3300009624 | Peatland | MVDSRPYPDATRLAELVQRIRVLKSDLSGMIEHGRSSKASSRLIMASGLLDGALEELSKAVSEQKD* |
Ga0116105_11797441 | 3300009624 | Peatland | MSTEESRSNPNSVHLAELVQKIRVLKSDLSGIIKHTGNSEVISRLIMASGLLDGALEELSKALSGRKD* |
Ga0116130_10782131 | 3300009762 | Peatland | MSTADSRRYPDATRLAELIQRIRVLKLDLSGMIEHGRNSKAISRLIMASGLLDGALEELSKAALEQRE* |
Ga0182018_100629433 | 3300014489 | Palsa | MSTAGSRLYPDPALLAELIQKIRVLRLDLSRIIEYSRDSKVGSRLIMASGLLDGALEELSQAASEQKG* |
Ga0182018_101695493 | 3300014489 | Palsa | QEDGRMSIADSRAYPDATLLAELVQKIHVLKLDLSRIIEHSRNSKAGSRLIMASGLLDGAFEELSKAASEQRD* |
Ga0187856_13363121 | 3300017925 | Peatland | MVDSRPYPDATRLAELVQRIRVLKSDLSGMIEHGRSSKASSRLIMASGLLDGALEELSKAVSEQKD |
Ga0187873_10593912 | 3300018013 | Peatland | MSTADSRRYPDATRLAELVQRIRVLKLDLSGMIEHGRNSKAISRLIMASGLLDGALEELSKAALEQRE |
Ga0187871_1002111410 | 3300018042 | Peatland | MSTADSRRYPDATRLAELIQRIRVLKLDLSGMIEHGRNSKAISRLIMASGLLDGALEELSKAASEQRE |
Ga0181504_13327715 | 3300019258 | Peatland | MSTADSRRYPDATRLAELVQRIRVLKLDLSGMIEHGRNSKAISRLIMASGLLDGALEELSKAASEQRE |
Ga0181506_13186994 | 3300019260 | Peatland | YPDATRLAELVQRIRVLKLDLSGMIEHGRNSKAISRLIMASGLLDGALEVLSKAASEQRE |
Ga0210403_100386502 | 3300020580 | Soil | MSTAGSRSYPDSTRLAELVQKIRLLKSDLSGMIEHSRDSKAISRLIMASGLLDGALEELSKAVWEQRD |
Ga0210395_108842971 | 3300020582 | Soil | PALLAELIQKIRVLRLLLSKILEQSRNSKVDSRLIMASGLLDGAIDELSKAESEQKD |
Ga0210401_101720431 | 3300020583 | Soil | MSTAGSRPYPDPALLAELIQKIRVLRLLLSKILEQSRNSKVDSRLIMASGLLDGAIDELSKAESEQKD |
Ga0210401_103412563 | 3300020583 | Soil | MSTAGSRSYPDSTRLAELVQKIRLLKSDLSGMIEHSRDSKAISRLIMASGLLDGALEELSKAVSEQRD |
Ga0210405_10000070123 | 3300021171 | Soil | MSTAGSRSYPDSTRLAELVQKIRLLKSDLSGMIEHSRDSKAISRLIMASGLLDGALGELSKAVWEQRD |
Ga0210388_100354191 | 3300021181 | Soil | MGNAGPRLSPDSTRLAELIQKIRALKLDLSRIIEYSRNSEVGSCLIMASGLLDGAIEELSNAKEEQND |
Ga0210388_100492733 | 3300021181 | Soil | MSTAGSRLDPHPALLAELIQKIRVLRSDLSRIIEYSRDSKVGSGLIMASGLLDGALEELSKAASEQKG |
Ga0210388_101374451 | 3300021181 | Soil | SRSYFGSTRLAELIQKIRILKSDLSGMINHGGNSKVIARLIMAAGLLDGALEELSQADLEQKE |
Ga0210388_102236052 | 3300021181 | Soil | MTISDSRPHPDATHLGELVQKIRVLKLDLRGIMEHSPNSKVFSRLIMASGLLDGAIEELSKSVSETKD |
Ga0210388_105694961 | 3300021181 | Soil | LVQKIRVVKLDLSRIIEHSRNSKIGSRLIMASGLLDGALDELSNAASEQKQ |
Ga0210388_108413382 | 3300021181 | Soil | MADLRPYPDPTLLAELVQKIRVLRLDLSRIIEHSRSSKVGSRLIMASGLLDGALEELSKAASEQRD |
Ga0210393_101122322 | 3300021401 | Soil | MDTAGSRLYPDSTRLAELVKKIRVLRLDLSRILQHSRNSHIGSHLIMASGLLDGAIEELSKAQSEQKD |
Ga0210393_101968781 | 3300021401 | Soil | MADSKPYPDATRLAELVQRIRVLRSDLSGMIEHGRSSKASSRLIMASGLLDGALEELTKAVSEQGETK |
Ga0210393_106503951 | 3300021401 | Soil | MSTVDSRPYPDATRLAELVQKIRILKSDLSGIIEHGRNLKAISRLILVSGLLDGALEELSKVASEHR |
Ga0210393_113674372 | 3300021401 | Soil | MGTSDPQPYPDAKRIAELVQKIRVLRSDLSGMVEHGRNSNATSRLIMASGLLDEAVQELTKAASEQKG |
Ga0210387_1000131024 | 3300021405 | Soil | MSTEGSKSYSDPTRLAEFVQKIRVLRLDLSRIIEHSRNSKVGSRLIMASGLLNEPIEELSKAESEQKD |
Ga0210386_110029372 | 3300021406 | Soil | QKIRVLRLDLSRIIEHSRSSKVGSRLIMASGLLDGALEELSKAASEQRD |
Ga0210383_103906082 | 3300021407 | Soil | MATAGSSSYSGSTRLAELIQKIRILKSDLSSMINHGGNSKMISRLIMASGLLDGALEELSKAMSEQKD |
Ga0210384_102420695 | 3300021432 | Soil | TAGSRSYPDSTRLAELVQKIRLLKSDLSGMIEHSRDSKAISRLIMASGLLDGALEELSKAVWEQRD |
Ga0210391_100146311 | 3300021433 | Soil | MSTAGSGSYPGSTRLAELIQKIRVLKLDLSKILQHSRNSHIGARLIMASGLLDGAIDELSKAESEQKD |
Ga0210391_100175075 | 3300021433 | Soil | MNTAGPRLYPDSTRLGELVQKIRMTRSDLSAMIEQSHHSKVISRLIMASGLLDGALEELSKAASEQSG |
Ga0210391_100250413 | 3300021433 | Soil | MSTTGSRLYPDPALLTELIQKIRVLRLDLSRIIEFSRDSKVGSGLIMASGLLDGALEELSKAASQQRD |
Ga0210398_101152652 | 3300021477 | Soil | MNIADSKPYPDATLLAELVQKIRVVKLDLSRIIEHSRNSKIGSRLIMASGLLDGALDELSNAASEQKE |
Ga0210409_109271551 | 3300021559 | Soil | VWSDSKPYPDATRLAELVQKIRLLKSDLSGMIEHSRDSKAISRLIMASGLLDGALEELSKAVSEQRD |
Ga0208035_10754171 | 3300025406 | Peatland | MVDSRPYPDATRLAELVQRIRVLKSDLSGMIEHGRSSKASSRLIMASGLLDGALEELSK |
Ga0208194_10036408 | 3300025412 | Peatland | QRQKGDQTSMVDSRPYPDATRLAELVQRIRVLKSDLSGMIEHGRSSKASSRLIMASGLLDGALEELSKAVSEQKD |
Ga0208562_11092841 | 3300025460 | Peatland | PDATRLAELIQRIRVLKLDLSGMIEHGRNSKAISRLIMASGLLDGALEELSKAASEQRE |
Ga0209529_10012296 | 3300027334 | Forest Soil | MSTAGSRSYPDATRLAEIVQKIRVLKLHLSGIIEHSRNSSVVSRLIMASGLLDIAIEEISKSVSEAKH |
Ga0209529_10166431 | 3300027334 | Forest Soil | MGNAGPRLNPDSTRLAELIQKIRALKLELSRIIEHSRNSEVGSCLIMASGLLDGAIEELSNAKVEQND |
Ga0209010_10043252 | 3300027370 | Forest Soil | MSTAGSRLYPAPALLAELIQKIRVLRLDLSRIIEYSRESKVGSRLIMASGLLDGALEELSKAASEQRD |
Ga0209222_10089544 | 3300027559 | Forest Soil | MATAGSRSYSGSTRLAELIQKIRILKSDLSGMINHGGNAKVISRLIMASGLLDGALEELSQAVSEQKE |
Ga0209222_10301092 | 3300027559 | Forest Soil | MTISDSRPHPDATHLAELVQKIRVLKLDLRGIMEHNRNSKLISRLIMASGLLDGAIEELSKSVSEAED |
Ga0209420_10453553 | 3300027648 | Forest Soil | MGTAGSSSYSGSARLAELIQKIRILKSDLSGMINRGGNSQVISRLIMASGLLDGALEELSKAASEQKD |
Ga0209007_10425902 | 3300027652 | Forest Soil | MSTTGSRLYPDPALLTELIQKIRVLRSDLSRIIEFSRDSKVGSGLIMASGLLDGALEELSKAASQQRD |
Ga0209248_100912792 | 3300027729 | Bog Forest Soil | MSIADSRPYPDATRLAELVQKMRLFKSDLKGIIERAHNSKAISRLIMASGLLDGALEELSKAASEK |
Ga0209139_100063685 | 3300027795 | Bog Forest Soil | MTNAGSRSQPDSVRLAELVQKIRVFKLDLTRIIEHSRNSKGGSRLIMASGLLDGVLEELAKAESELKD |
Ga0209693_102892891 | 3300027855 | Soil | MGTAGSRSYFGSTRLAELIQKIRILKSDLSGMINHGGNSKVIARLIMAAGLLDGALEELSQADLEQKE |
Ga0209169_105988881 | 3300027879 | Soil | RGGRMTISDSRPHPDATHLGELVQKIRVLKLDLRGIMEHSPNSKVFSRLIMASGLLDGAIEELSKSVSETKD |
Ga0209380_101608111 | 3300027889 | Soil | MATAGSSSYSGSTRLAELIQKIRILKSDLSGMINHGGNSKVIARLIMAAGLLDGALEELSQADLEQKE |
Ga0209624_100219611 | 3300027895 | Forest Soil | PTLLAELVQKIRVLRLDLSRIIEHSRSSKVGSRLIMASGLLDGALEELSKAASEQRD |
Ga0209624_104273042 | 3300027895 | Forest Soil | MADLRPYPDPTLLTELVQKIRVLRLDLSRIIEHSRSSKVGSRLIMASGLLDGALEELSK |
Ga0209624_110450901 | 3300027895 | Forest Soil | MSITGSRSYSGSTRLIEVIEKIRLLKSDLSGIIEYNRNSKVICRLIMASTLLDGALQELSTCVSEQRD |
Ga0308309_109549892 | 3300028906 | Soil | ADSKPYPDATLLAELVQKIRVVKLDLSRIIEHSRNSKIGSRLIMASGLLDGALDELSNAASEQKE |
Ga0308309_113683061 | 3300028906 | Soil | MITEESRSNPDSIHLSQLVQKIRILKSDLSGIIKRSHNSDVASRLIMASGLLDGALEELSKALSGRKD |
Ga0310686_1093572162 | 3300031708 | Soil | MNIADSKPYPDATLLAELVQKIRVLKLDLSRIIEHSRNSQVGSRLIMASGLLDGALDELSDAASEQKE |
Ga0370515_0009015_4422_4628 | 3300034163 | Untreated Peat Soil | MSIADSRAYPDATLLAELVQKIHVLKLDLSRIIEHSRNSKAGSRLIMASGLLDGALEELSKAASEQRD |
Ga0370515_0022878_1877_2083 | 3300034163 | Untreated Peat Soil | MGSAGSRSYSGSTRLAELIQKIRILRADLSGMINHGGNSKVISRLIMAAGLLDGALEELSQAVSEQKD |
Ga0370515_0051092_1412_1618 | 3300034163 | Untreated Peat Soil | MSTAGSRLYPDPALLAELIQKIRVLRLDLSRIIEYSRDSKVGSRLIMASGLLDGALEELSKAASEQKG |
Ga0370515_0185656_489_695 | 3300034163 | Untreated Peat Soil | MSIPDPKPYPDATRLAELVQKLRVFKSDLKAMIERAHNTKIVSRLIMATGLLDGALEELSKAASEERD |
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