NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F105560

Metagenome / Metatranscriptome Family F105560

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F105560
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 60 residues
Representative Sequence MFGRNIDFFAVFFIALAMLGFAEVRSWHLREALDSIRVGNAIQVERCPISEQVLSNLASIFH
Number of Associated Samples 72
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 81.00 %
% of genes near scaffold ends (potentially truncated) 22.00 %
% of genes from short scaffolds (< 2000 bps) 77.00 %
Associated GOLD sequencing projects 68
AlphaFold2 3D model prediction Yes
3D model pTM-score0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (71.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(23.000 % of family members)
Environment Ontology (ENVO) Unclassified
(28.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(68.000 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 63.33%    β-sheet: 0.00%    Coil/Unstructured: 36.67%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.37
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF00005ABC_tran 76.00
PF00672HAMP 3.00
PF13437HlyD_3 3.00
PF01694Rhomboid 3.00
PF00072Response_reg 1.00
PF00596Aldolase_II 1.00
PF01007IRK 1.00
PF13620CarboxypepD_reg 1.00
PF13188PAS_8 1.00
PF04972BON 1.00
PF00158Sigma54_activat 1.00
PF05985EutC 1.00
PF00589Phage_integrase 1.00
PF01916DS 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG0705Membrane-associated serine protease, rhomboid familyPosttranslational modification, protein turnover, chaperones [O] 3.00
COG1899Deoxyhypusine synthaseTranslation, ribosomal structure and biogenesis [J] 1.00
COG4302Ethanolamine ammonia-lyase, small subunitAmino acid transport and metabolism [E] 1.00


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms71.00 %
UnclassifiedrootN/A29.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001593|JGI12635J15846_10509974Not Available709Open in IMG/M
3300004080|Ga0062385_10952555Not Available573Open in IMG/M
3300004092|Ga0062389_102765004All Organisms → cellular organisms → Bacteria → Acidobacteria655Open in IMG/M
3300004092|Ga0062389_103797435All Organisms → cellular organisms → Bacteria567Open in IMG/M
3300004635|Ga0062388_100731351All Organisms → cellular organisms → Bacteria → Acidobacteria928Open in IMG/M
3300004635|Ga0062388_100875646All Organisms → cellular organisms → Bacteria860Open in IMG/M
3300005538|Ga0070731_10626222Not Available716Open in IMG/M
3300005591|Ga0070761_10074096All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia1934Open in IMG/M
3300005602|Ga0070762_10921855All Organisms → cellular organisms → Bacteria → Acidobacteria596Open in IMG/M
3300005712|Ga0070764_10280476All Organisms → cellular organisms → Bacteria → Acidobacteria956Open in IMG/M
3300005712|Ga0070764_10386963All Organisms → cellular organisms → Bacteria824Open in IMG/M
3300006028|Ga0070717_10009714All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae7242Open in IMG/M
3300006176|Ga0070765_100941371All Organisms → cellular organisms → Bacteria817Open in IMG/M
3300006638|Ga0075522_10031063All Organisms → cellular organisms → Bacteria3244Open in IMG/M
3300009521|Ga0116222_1541550All Organisms → cellular organisms → Bacteria511Open in IMG/M
3300009637|Ga0116118_1077274All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia1141Open in IMG/M
3300010379|Ga0136449_100003563All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae46723Open in IMG/M
3300010379|Ga0136449_104483058Not Available514Open in IMG/M
3300011120|Ga0150983_13850498All Organisms → cellular organisms → Bacteria → Acidobacteria793Open in IMG/M
3300011120|Ga0150983_16573348Not Available785Open in IMG/M
3300014169|Ga0181531_10025276All Organisms → cellular organisms → Bacteria → Acidobacteria3415Open in IMG/M
3300014169|Ga0181531_10090355All Organisms → cellular organisms → Bacteria → Acidobacteria1822Open in IMG/M
3300014495|Ga0182015_10543331Not Available740Open in IMG/M
3300014501|Ga0182024_10003201All Organisms → cellular organisms → Bacteria → Acidobacteria39397Open in IMG/M
3300014501|Ga0182024_10064496All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae5617Open in IMG/M
3300014654|Ga0181525_10001786All Organisms → cellular organisms → Bacteria → Acidobacteria18101Open in IMG/M
3300014654|Ga0181525_10112539All Organisms → cellular organisms → Bacteria → Acidobacteria1501Open in IMG/M
3300017822|Ga0187802_10383161All Organisms → cellular organisms → Bacteria555Open in IMG/M
3300017925|Ga0187856_1000858All Organisms → cellular organisms → Bacteria → Acidobacteria25857Open in IMG/M
3300017934|Ga0187803_10272179All Organisms → cellular organisms → Bacteria673Open in IMG/M
3300017943|Ga0187819_10504225All Organisms → cellular organisms → Bacteria690Open in IMG/M
3300017975|Ga0187782_10559340Not Available877Open in IMG/M
3300017988|Ga0181520_10566161Not Available794Open in IMG/M
3300018012|Ga0187810_10191780Not Available829Open in IMG/M
3300018034|Ga0187863_10124324All Organisms → cellular organisms → Bacteria1442Open in IMG/M
3300018086|Ga0187769_10458977Not Available960Open in IMG/M
3300020582|Ga0210395_11001254Not Available619Open in IMG/M
3300020582|Ga0210395_11259696Not Available542Open in IMG/M
3300020583|Ga0210401_10500050Not Available1078Open in IMG/M
3300021168|Ga0210406_10133042All Organisms → cellular organisms → Bacteria → Acidobacteria2095Open in IMG/M
3300021181|Ga0210388_10042099All Organisms → cellular organisms → Bacteria → Acidobacteria3790Open in IMG/M
3300021181|Ga0210388_10089793All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2618Open in IMG/M
3300021181|Ga0210388_10101328All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2466Open in IMG/M
3300021181|Ga0210388_10292868All Organisms → cellular organisms → Bacteria → Acidobacteria1430Open in IMG/M
3300021181|Ga0210388_10619717Not Available946Open in IMG/M
3300021181|Ga0210388_10839970Not Available794Open in IMG/M
3300021388|Ga0213875_10014107All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae3906Open in IMG/M
3300021388|Ga0213875_10056917All Organisms → cellular organisms → Bacteria → Acidobacteria1831Open in IMG/M
3300021402|Ga0210385_10227824All Organisms → cellular organisms → Bacteria1363Open in IMG/M
3300021402|Ga0210385_10291974All Organisms → cellular organisms → Bacteria → Acidobacteria1207Open in IMG/M
3300021404|Ga0210389_10193376All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1586Open in IMG/M
3300021406|Ga0210386_10254023All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1500Open in IMG/M
3300021406|Ga0210386_11098804Not Available675Open in IMG/M
3300021407|Ga0210383_11440615Not Available572Open in IMG/M
3300021420|Ga0210394_10060700All Organisms → cellular organisms → Bacteria → Acidobacteria3287Open in IMG/M
3300021420|Ga0210394_10718770All Organisms → cellular organisms → Bacteria → Acidobacteria875Open in IMG/M
3300021432|Ga0210384_11238786All Organisms → cellular organisms → Bacteria651Open in IMG/M
3300021433|Ga0210391_10150391All Organisms → cellular organisms → Bacteria1833Open in IMG/M
3300021433|Ga0210391_10548810Not Available907Open in IMG/M
3300021477|Ga0210398_10899149All Organisms → cellular organisms → Bacteria710Open in IMG/M
3300022505|Ga0242647_1031953Not Available571Open in IMG/M
3300025664|Ga0208849_1001611All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria14945Open in IMG/M
3300027609|Ga0209221_1018975All Organisms → cellular organisms → Bacteria → Acidobacteria1815Open in IMG/M
3300027619|Ga0209330_1129980Not Available571Open in IMG/M
3300027692|Ga0209530_1015641All Organisms → cellular organisms → Bacteria → Acidobacteria2314Open in IMG/M
3300027853|Ga0209274_10126351All Organisms → cellular organisms → Bacteria1276Open in IMG/M
3300027869|Ga0209579_10228832All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae997Open in IMG/M
3300027895|Ga0209624_10020980All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae4139Open in IMG/M
3300027895|Ga0209624_10386448Not Available933Open in IMG/M
3300027895|Ga0209624_10435056All Organisms → cellular organisms → Bacteria → Acidobacteria874Open in IMG/M
3300027905|Ga0209415_10001111All Organisms → cellular organisms → Bacteria → Acidobacteria51107Open in IMG/M
3300027905|Ga0209415_10406946All Organisms → cellular organisms → Bacteria → Acidobacteria1095Open in IMG/M
3300027908|Ga0209006_11483195All Organisms → cellular organisms → Bacteria514Open in IMG/M
3300028780|Ga0302225_10226145All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae896Open in IMG/M
3300028863|Ga0302218_10198933All Organisms → cellular organisms → Bacteria640Open in IMG/M
3300028863|Ga0302218_10213197Not Available618Open in IMG/M
3300029882|Ga0311368_10200122All Organisms → cellular organisms → Bacteria1584Open in IMG/M
3300029882|Ga0311368_11018823All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae545Open in IMG/M
3300029943|Ga0311340_10656884All Organisms → cellular organisms → Bacteria906Open in IMG/M
3300029999|Ga0311339_11513654All Organisms → cellular organisms → Bacteria597Open in IMG/M
3300030007|Ga0311338_10002099All Organisms → cellular organisms → Bacteria → Acidobacteria32591Open in IMG/M
3300030053|Ga0302177_10243906Not Available974Open in IMG/M
3300030058|Ga0302179_10334807All Organisms → cellular organisms → Bacteria666Open in IMG/M
3300030490|Ga0302184_10291824All Organisms → cellular organisms → Bacteria657Open in IMG/M
3300030618|Ga0311354_10007933All Organisms → cellular organisms → Bacteria14003Open in IMG/M
3300031057|Ga0170834_104376497Not Available559Open in IMG/M
3300031231|Ga0170824_128298959Not Available964Open in IMG/M
3300031236|Ga0302324_100728551All Organisms → cellular organisms → Bacteria → Acidobacteria1394Open in IMG/M
3300031236|Ga0302324_101044958All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1105Open in IMG/M
3300031708|Ga0310686_105899342All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae5850Open in IMG/M
3300031708|Ga0310686_109718918All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae4810Open in IMG/M
3300031708|Ga0310686_111539410Not Available1040Open in IMG/M
3300031708|Ga0310686_115750263All Organisms → cellular organisms → Bacteria → Acidobacteria568Open in IMG/M
3300031715|Ga0307476_11382294Not Available513Open in IMG/M
3300031718|Ga0307474_10260133All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus1331Open in IMG/M
3300031823|Ga0307478_10650035Not Available883Open in IMG/M
3300032805|Ga0335078_10386193All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia1844Open in IMG/M
3300032829|Ga0335070_12136654All Organisms → cellular organisms → Bacteria502Open in IMG/M
3300032895|Ga0335074_10067840All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae4832Open in IMG/M
3300033887|Ga0334790_094657Not Available981Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil23.00%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa14.00%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil10.00%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil6.00%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil5.00%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog5.00%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil5.00%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment4.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil4.00%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil3.00%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil3.00%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland2.00%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil2.00%
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil2.00%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil2.00%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland2.00%
PermafrostEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost2.00%
Plant RootsHost-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots2.00%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland1.00%
PalsaEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa1.00%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere1.00%
SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Soil1.00%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001593Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2EnvironmentalOpen in IMG/M
3300004080Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3EnvironmentalOpen in IMG/M
3300004092Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300004635Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3EnvironmentalOpen in IMG/M
3300005538Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1EnvironmentalOpen in IMG/M
3300005591Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1EnvironmentalOpen in IMG/M
3300005602Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2EnvironmentalOpen in IMG/M
3300005712Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4EnvironmentalOpen in IMG/M
3300006028Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaGEnvironmentalOpen in IMG/M
3300006176Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5EnvironmentalOpen in IMG/M
3300006638Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-AEnvironmentalOpen in IMG/M
3300009521Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaGEnvironmentalOpen in IMG/M
3300009637Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_40EnvironmentalOpen in IMG/M
3300010379Sb_50d combined assemblyEnvironmentalOpen in IMG/M
3300011120Combined assembly of Microbial Forest Soil metaTEnvironmentalOpen in IMG/M
3300014169Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaGEnvironmentalOpen in IMG/M
3300014495Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaGEnvironmentalOpen in IMG/M
3300014501Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300014654Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaGEnvironmentalOpen in IMG/M
3300017822Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2EnvironmentalOpen in IMG/M
3300017925Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40EnvironmentalOpen in IMG/M
3300017934Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3EnvironmentalOpen in IMG/M
3300017943Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4EnvironmentalOpen in IMG/M
3300017975Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300017988Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaGEnvironmentalOpen in IMG/M
3300018012Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5EnvironmentalOpen in IMG/M
3300018034Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10EnvironmentalOpen in IMG/M
3300018086Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MGEnvironmentalOpen in IMG/M
3300020582Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-OEnvironmentalOpen in IMG/M
3300020583Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-MEnvironmentalOpen in IMG/M
3300021168Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-MEnvironmentalOpen in IMG/M
3300021181Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-OEnvironmentalOpen in IMG/M
3300021388Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8Host-AssociatedOpen in IMG/M
3300021402Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-OEnvironmentalOpen in IMG/M
3300021404Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-OEnvironmentalOpen in IMG/M
3300021406Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-OEnvironmentalOpen in IMG/M
3300021407Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-OEnvironmentalOpen in IMG/M
3300021420Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-MEnvironmentalOpen in IMG/M
3300021432Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-MEnvironmentalOpen in IMG/M
3300021433Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-OEnvironmentalOpen in IMG/M
3300021477Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-OEnvironmentalOpen in IMG/M
3300022505Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300025664Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-3 deep-072012 (SPAdes)EnvironmentalOpen in IMG/M
3300027609Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300027619Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O3 (SPAdes)EnvironmentalOpen in IMG/M
3300027692Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300027853Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)EnvironmentalOpen in IMG/M
3300027869Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027895Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300027905Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)EnvironmentalOpen in IMG/M
3300027908Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300028780Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2EnvironmentalOpen in IMG/M
3300028863Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_1EnvironmentalOpen in IMG/M
3300029882III_Palsa_E1 coassemblyEnvironmentalOpen in IMG/M
3300029943I_Palsa_N3 coassemblyEnvironmentalOpen in IMG/M
3300029999I_Palsa_E3 coassemblyEnvironmentalOpen in IMG/M
3300030007I_Palsa_E1 coassemblyEnvironmentalOpen in IMG/M
3300030053Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_2EnvironmentalOpen in IMG/M
3300030058Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_1EnvironmentalOpen in IMG/M
3300030490Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_3EnvironmentalOpen in IMG/M
3300030618II_Palsa_E3 coassemblyEnvironmentalOpen in IMG/M
3300031057Oak Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031236Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031715Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05EnvironmentalOpen in IMG/M
3300031718Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05EnvironmentalOpen in IMG/M
3300031823Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05EnvironmentalOpen in IMG/M
3300032805Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2EnvironmentalOpen in IMG/M
3300032829Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3EnvironmentalOpen in IMG/M
3300032895Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3EnvironmentalOpen in IMG/M
3300033887Peat soil microbial communities from Stordalen Mire, Sweden - 713 P-1-X1EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12635J15846_1050997423300001593Forest SoilMFKQNIDFFAVLSIALAMLAFAEVRSWHLQEALDSIRVEKAIQVERCPISRQVLSNLSSIFH*
Ga0062385_1095255523300004080Bog Forest SoilMFGRNVDFFGVFFIALAMLGFAEVRSWHLPEALDSIHIENAIQMDRCQNSRQVWSNLASMFH*
Ga0062389_10276500423300004092Bog Forest SoilMFKRNIDFFGVFFIALAMLGFAELRDWRLPDSIRFGDAINVERCPTSQQVLSNLSAIFH*
Ga0062389_10379743523300004092Bog Forest SoilVMFGRNIDFFAVLAIAAILLGVAEVRSWHLAEALDSIRVENAIDIQSCPASRQVLSNIVSILH*
Ga0062388_10073135123300004635Bog Forest SoilMLGRNIDFLAVSVIALAMLAFAEVRTWHLSEALDSIRIENAIQVERCPLSQQVLSNLALIFK*
Ga0062388_10087564623300004635Bog Forest SoilRKRKCGVMFRRNIDFFGVFFIALAMLGFAELRDWRLPDSIRFGDAINVERCPTSQQVLSNLSAIFH*
Ga0070731_1062622223300005538Surface SoilMFGRNIDFFAVFFIALAMLAFAEVRSWHLHDALDSIRLENAIQVERCPISEQVLSNVFSILR*
Ga0070761_1007409633300005591SoilMFGRNVDFFAVLFIALAMLGFAEVRSWHLQEALDSIRVENAIQIERCPVSQRVFSNLASIFK*
Ga0070762_1092185523300005602SoilMFGRNIDFFAVCFIALAMLGFAEARSWHFQEALDSIRVENAIQVDRCTTSRHVMSTLSSILK*
Ga0070764_1028047623300005712SoilMFGRNVDFFAVLFIALAMLGFAEVRSWHFQEALDSIRIENAIQIERCPVSQRVFSNLASIFK*
Ga0070764_1038696323300005712SoilMFERNVDVFGVLFIALAMLGFAEVRNWHVAEVLDSIHVGNAIDVERCPTSRQVWSNVSAIFH*
Ga0070717_1000971453300006028Corn, Switchgrass And Miscanthus RhizosphereMFRRNIDFFAVSVIALAMLGFAEVRSWHLPEALDSIRVENAIDVENCPISRQVLSNIESLLQ*
Ga0070765_10094137113300006176SoilAMLGFAEARSWHLEEALDSIRVENAIQVDGCPTSRHVITTLSSILH*
Ga0075522_1003106313300006638Arctic Peat SoilMFGRNIDFFAVLFIALAMLGFAEVRSWHMPDSIRVGNAIQVERCPISEQVLSNLSSIFH*
Ga0116222_154155023300009521Peatlands SoilFFAVSVIALAMLAFAEARSWHLPEALDSIRVENAIDVENCPISRQVWSNLASLLH*
Ga0116118_107727433300009637PeatlandMFGRNIDFFAVSFIALAMLGFAEVRTWHMPDSIRIGNAIDVERCPISQQVLSNLSSIFR*
Ga0136449_100003563433300010379Peatlands SoilMFRQNIDFFAVSVIAIAMLAFAEARSWHLPEALDSIRVENAIDVENCPISRQVWSNLASLLH*
Ga0136449_10448305813300010379Peatlands SoilMFGRNVDFFAVLFIGLAMLGFAQARSWHLTDALDSIRVENAIEVERCPTTRQVLSNLSSIFK*
Ga0150983_1385049823300011120Forest SoilMFRRNIDFFAVLFIALAMLGFAEARSWHLEEALDSIRVENAIQVDGCPTSRHVITTLSSILH*
Ga0150983_1657334813300011120Forest SoilMFGRNVDFFGVLFIALAMLGFAEVRNWHLSDALDSIRVGNAIQVERCPITGQVWSNLSSMFH*
Ga0181531_1002527623300014169BogMFGRSIDFFAVLFIALAMLGFAEARSWHLEEALDSIRVENAIQVDRCPTSQHVMTILSSILK*
Ga0181531_1009035533300014169BogMFGRNIDFFAVLFIALAMLGFAEVRSWHLAEALDSMRVENAIDVERCPISQKVLTNLSAIFH*
Ga0182015_1054333113300014495PalsaMFGRNIDFFAVLFIALAMLGLAQARSWHLQEALDSIGVENAIQVDGCPTSRQVLSTLTSIFK*
Ga0182024_1000320133300014501PermafrostMFGRNIDFFAVFFIALAMLGFAEVRSWHLREALDSIRVGNAIQVERCPISEQVLSNLASIFH*
Ga0182024_1006449643300014501PermafrostMFGKNVDFFAVLFIALAMLGFAEARAWHIPDSIRIGNAIDIERCPTTQQVLSNLFAIFR*
Ga0181525_10001786123300014654BogMFGRNIDFFAVFFIALAMLGFSEVRSWHLSEALDSVRVENAIQVERCPVSRQVLANLSSILP*
Ga0181525_1011253933300014654BogMFGRNIDFFAVLFIALAMLGFAEARSWHLEEALDSIRVENAIQVDRCPTSQHVMTALGSILK*
Ga0187802_1038316113300017822Freshwater SedimentMLRRNIDFFAVSIIALTMLGFAELRSWHFPEALDSFRVENAIDVERCPISSQVLSNLASILR
Ga0187856_1000858103300017925PeatlandMFGRNIDFFAVSFIALAMLGFAEVRTWHMPDSIRIGNAIDVERCPISQQVLSNLSSIFR
Ga0187803_1027217923300017934Freshwater SedimentGFAEVRSWHLGEALDSVRVDNAIQVERCPISEQVLSDLAAIFH
Ga0187819_1050422523300017943Freshwater SedimentMFGRDIDFFAVLFIALAMLGFAEVRHLREALDSIRVENAIDVERCPISRQVLSNLFSIFH
Ga0187782_1055934013300017975Tropical PeatlandMFAKNIDFFAVLFIAFAMLGFAEVQSWHLPGTLDSIRIENAIQVERCPISQQLLSNLARIIHR
Ga0181520_1056616123300017988BogMFGRNVDFFAVFFIALAMLGFAEVRSWHGFDGLDSIRFGDAINLQPCPTSRQVLSVIGSMFR
Ga0187810_1019178013300018012Freshwater SedimentMFGRNIDFFAVLLIAIAMLGFAELRTLQIPDSIRVGNAIDVERCPISQQVLSNLSSIFR
Ga0187863_1012432433300018034PeatlandMFGRNIDFFAVSVIALAMLGLAEVRSWHLTEALDSIRIGDALAIERCPISRQVVSELASILH
Ga0187769_1045897723300018086Tropical PeatlandFIALVMLGFAEVRSWQLPGVDPIRIENAIDVERCPVSSQVLSNLFSIMHR
Ga0210395_1100125423300020582SoilMFGRNVDFFAVLFIALAMLGFAEVRSWHLQEALDSIRVENAIQIDRCPVSQRVFSNLASIFK
Ga0210395_1125969623300020582SoilMFGRNVDFFAVLFIALAMLGFAEARTWHIPDSIRIGNAIDIDRCPTTQQVLS
Ga0210401_1050005013300020583SoilMFGRNVDFFGVFFIALAMLGFAQVRNWHLSEALDSIRVGNAIQVERCPITGQVWSNLSSMFH
Ga0210406_1013304233300021168SoilMFGRNIDFFAVFFIALAMLGFAEARSWHFQDRLDSIRFENAIQVERCSTTSQVLSNLASILH
Ga0210388_1004209923300021181SoilMFGRNVDFFAVLFIALAMLGFAEVRSWHLQEALDSIRVENAIQIERCPVSQRVFSNLASIFK
Ga0210388_1008979343300021181SoilMLRRNIDFFGVFFIALAMLGFAELRNLRLPDSIRFGDAINVERCPTSQQVLSNLSAIFH
Ga0210388_1010132833300021181SoilMLRKNIDFIAVSCIALVMLGFAQLRSWQLPEGLDSIHIENAIDIERCPVSSQVLSHLFAILR
Ga0210388_1029286823300021181SoilMFKENIDFFAVSFIALAMLGFAEVRSWHFQEALDSIRIENAIQVERCPISRQVVSNITSIFR
Ga0210388_1061971713300021181SoilMFGRNVDFFGVLFIALAMLGFAEVRNWHLSDALDSIRVGNAIQVERCPITGQVWSNLSSMFH
Ga0210388_1083997013300021181SoilMFERNVDVFGVLFIALAMLGFAEVRNWHVAEVLDSIHVGNAIDVERCPTSRQVWSTVSAIFH
Ga0213875_1001410723300021388Plant RootsMFSRNIDFFAVLLIALAVLGLAEARSWNSAEALDSFQVENAIHIERCPIPEQILSTFSWFLHR
Ga0213875_1005691733300021388Plant RootsMFSRNIDFFAVVLIALAVLGFAEARSWNASEALDSFQVENAIHIERCPIPEQILSNFSWLLHR
Ga0210385_1022782433300021402SoilMFERNVDVFGVLFIALAMLGFAEVRNWHVAEVLDSIHVGNAIDVERCPTSRQVWSNVSAIFH
Ga0210385_1029197423300021402SoilMFGRNIDFFAVSVIALAMLGFTELRQLRLPEGLDSIRVGNAIQIERCPISRQVLSNLFAAFR
Ga0210389_1019337623300021404SoilMLRQNVDFFAVAIIALAMLGFAEVRSWHFPETLDSFRVENAIDVQRCPISSQVLLNLTSILR
Ga0210386_1025402323300021406SoilMFGRNIDFFAVSLIALAMLGFTVVRQWRLPQGLDSIRVENAIQMERCPISRQVLSGLAAMLH
Ga0210386_1109880413300021406SoilMFGRNVDFFAVLFIALAMLGFAEARTWHIPDSIRIGNAIDIDRCPTTQQVLSNLAAIFK
Ga0210383_1144061523300021407SoilMFKQNIDFFAVLSIALAMLGFAEVRSWHFQEALDSIRIENAIQVERCPISRQVVSN
Ga0210394_1006070013300021420SoilMFRRNIDFFAVLFIALAMLGFAEARSWHLEEALDSIRVENAIQVDGCPTSRHVITTLSSILH
Ga0210394_1071877023300021420SoilMFGRNIDFFAVLFIALAMLGFAEVRSLHFTDSIGVENAIQVEQCPASRQVLSNLSRILH
Ga0210384_1123878613300021432SoilMLGRNVDFFAVFFIALAMLGFAKAQTWDLTEALDSIRVENAIYVERSPISKEVLSNLPCIFQH
Ga0210391_1015039133300021433SoilMLRKNIDFIAVSSIALVMLGFAQLRSWQLPEGLDSIHIENAIDIERCPVSSQVLSHLFAILH
Ga0210391_1054881013300021433SoilMFGRNVDFFAVLFIALAMLGFAEVRSWHLQEALDSIRVENAIQIDRCPVSQRVFSNL
Ga0210398_1089914913300021477SoilMFGRNVDFFAVLFIALAMLGFAEARTWHIPDSIRIGNAIDVESCPTTQQVLSNLFSIFR
Ga0242647_103195313300022505SoilMFGRNVDFFAVLFIALAMLGFAEVRSWHLQEALDSIRVENAIQIDRCPVSQRVF
Ga0208849_100161113300025664Arctic Peat SoilMFGRNIDFFAVLFISLAMLGFAGVRSWHFQDTLDSIRVENAIQVENCPTTRQALSNLASILH
Ga0209221_101897523300027609Forest SoilMFKQNIDFFAVSFIALAMLGFAEVRQWHLPEALDSIRVEDAIQVQRCPISRQVLSNLFAIFH
Ga0209330_112998013300027619Forest SoilMFGRNVDFFGVLFIALAMLGFAEVRNWHLSDALDSIRVGNAIQVERCPITGQVWSNLASMFH
Ga0209530_101564133300027692Forest SoilMFKQNIDFFAVLSIALAMLAFAEVRSWHLQEALDSIRVEKAIQVERCPISRQVLSNLSSIFH
Ga0209274_1012635133300027853SoilLFIALAMLGFAEVRSWHLQEALDSIRVENAIQIERCPVSQRVFSNLASIFK
Ga0209579_1022883223300027869Surface SoilMFGRNIDFFAVFFIALAMLAFAEVRSWHLHDALDSIRLENAIQVERCPISEQVLSNVFSILR
Ga0209624_1002098043300027895Forest SoilMLRRNVDFFGVFFIALAMLGFAGVRSWHLPEALDSIHIENAIQMDRCTNSRQVWSNLASIFH
Ga0209624_1038644813300027895Forest SoilMLRKNVDFIAVSCIALVMLGFAQLRSWQLPEGLDSIHIENAIDIERCPVSSQVLSHLFAILH
Ga0209624_1043505623300027895Forest SoilMFKENIDFFAVSFIALAMLGFAEVRSWHFQEALDSIRIGNAIQVERCPTSRQVLSSLTSIFH
Ga0209415_10001111483300027905Peatlands SoilMFRQNIDFFAVSVIALAMLAFAEARSWHLPEALDSIRVENAIDVENCPISRQVWSNLASLLH
Ga0209415_1040694623300027905Peatlands SoilVFGRNVDFFAVLFIALAMLGFAEARTWHMPDSIRIGNAIDVERCPTTQQVLSNLSAIFR
Ga0209006_1148319513300027908Forest SoilRNIDFFAVSVIALAMLAFAEVRSWHVTEALDSIHISDAIHIQRCPISGQVWSNLSAILH
Ga0302225_1022614523300028780PalsaMFKQNVDFFGVFFIALAMLGFAELRSWNIPDALDSIRIENAIQMERCPTSRQVWSNLAAIFH
Ga0302218_1019893313300028863PalsaFAVSVIALAMLGLAEVRSWHLTEALDSIRIGDALAIERCPISRQVVSELASILH
Ga0302218_1021319713300028863PalsaMFKQNVDFFGVFFIALAMLGFAGLRSWNIPDALDSIRIENAIQIERCPMSRQVWSNLAAIFH
Ga0311368_1020012233300029882PalsaMFRRNIDFFAVFFIALAMLGFAEVQSWHVSDALDSIRFGDAIDVERCPTSRQVWSNLAALFH
Ga0311368_1101882323300029882PalsaMFKQNVDFFGVFFIALAMLGFAELRSWNIPDALDSIRIENAIQIERCPMSRQVWSNLAAIFH
Ga0311340_1065688413300029943PalsaDCGRKCGGGVMFGRNVDFFAVLFIALAMLGFAEVRSWHLQEALDSIRVENAIQIERCPVSQRVFSNLASIFK
Ga0311339_1151365413300029999PalsaMFGRNIDFFAVFFIALAMLGVAEVRSWHVREALDSIRVENAIQVKRCPISEQVLSNIASILH
Ga0311338_10002099343300030007PalsaMFRRNIDFFAVFFIALAMLGFPEVQSWHVSDALDSIRFGDAIDVERCPTSRQVWSNLAALFH
Ga0302177_1024390613300030053PalsaRGSGVMFKQNVDFFGVFFIALAMLGFAGLRSWNIPDALDSIRIENAIQIERCPMSRQVWSNLAAIFH
Ga0302179_1033480713300030058PalsaGVMFGRNVDFFAVLFIALAMLGFAEVRSWHLQEALDSIRVENAIQIERCPVSQRVFSNLASIFK
Ga0302184_1029182423300030490PalsaFAVFFIALAMLGFAEVQSWHVSDALDSIRFGDAIDVERCPTSRQVWSNLAALFH
Ga0311354_10007933193300030618PalsaRNIDFFAVFFIALAMLGFAEVQSWHVSDALDSIRFGDAIDVERCPTSRQVWSNLAALFH
Ga0170834_10437649723300031057Forest SoilMFGRNIDFFAVLCISITMLAVAEVRSWHLTEALHSIRVEHAIQVDRCPISGQVFSNLA
Ga0170824_12829895913300031231Forest SoilMFGRNIDFFAVFFIALAMLGLAEARSWHFQDRLDSIRFENAIQVERCPTTSQVLSNLASILH
Ga0302324_10072855113300031236PalsaMFGRNIDFFAVLFIALAMLGFAEARSWHLEEALDSIRVENAIQVDQCPTSQHVMTALGSILK
Ga0302324_10104495823300031236PalsaMFGRNIDFFAVLFIALAMLGFAQVRSWNLPEALDSIRFGPAIDVERCPITRQVLSNLGAILH
Ga0310686_10589934273300031708SoilMFGRNVDFFGVLFIALAMLGFAEVRNWHLSDALDSIRVGNAIQVERCPITGQVWSNLAAMFR
Ga0310686_10971891833300031708SoilMFGRNVDFFAVLFIALAMLGFAEVRSWHFQEALDSIRVENAIQIERCPVSQRVFSNLASIFK
Ga0310686_11153941033300031708SoilALAMLGFAEARSWHLEEALDSIRIENAIQVDGCSTSRHVMTTLGSILH
Ga0310686_11575026323300031708SoilMLRQNIDFFAVSAIALAMLGFAEIKSWHFIDGLDSIRIEKAIHIESCPITRQVLANLFRTVN
Ga0307476_1138229423300031715Hardwood Forest SoilMFGRNVDFFAVLFIALAMLGFAEARTWHMPDSIRIGNAIDVESCPATQQVLSNLSSIFR
Ga0307474_1026013313300031718Hardwood Forest SoilMFGRNIDFFAVFFIAVAMLGFAEVRSWHLQEALDSIRIGNAIQVEHCPTSRQVLSNLASIFH
Ga0307478_1065003513300031823Hardwood Forest SoilMFGRNVDFFGVLFIALAMLAFAEVRSWHVPEALDSIRFGDAINVERCPTSRQVLSSLSAIFN
Ga0335078_1038619323300032805SoilMLGRNVDFFAVLVIALAMLGFAEVRTWRMPDSIRIGNAIDVERCPVSQQVLSNLSSIFH
Ga0335070_1213665413300032829SoilKRGDSIMFGRNVDFFAVLLIALAMLGFGQARSWNFTEALDTIRVENAIHVERCSLSQQVLSNLSSIFK
Ga0335074_1006784023300032895SoilMLGRNIDFFAVLCIALVMLGFAEIRSWHWTDAPESIRIENAIDIDRCPISRQVLSNLFSRLH
Ga0334790_094657_182_3613300033887SoilMFGKNVDFFAVLFIALAMLGFAEARTWHIPDSIRIGNAIDIERCPTAQQVLSNLFSIFH


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