NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F105550

Metagenome / Metatranscriptome Family F105550

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F105550
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 79 residues
Representative Sequence LPQHPAVRTRKARVLRSREERREFLATCEKTLGSSFSVFVDGDPASIRQLDTDAKKQTFLEHAPVRPWESRPFQGARVEQ
Number of Associated Samples 93
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 21.00 %
% of genes from short scaffolds (< 2000 bps) 16.00 %
Associated GOLD sequencing projects 91
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (79.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog
(14.000 % of family members)
Environment Ontology (ENVO) Unclassified
(28.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(43.000 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 32.50%    β-sheet: 5.00%    Coil/Unstructured: 62.50%
Feature Viewer
Powered by Feature Viewer


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF03524CagX 82.00
PF05565Sipho_Gp157 1.00
PF02534T4SS-DNA_transf 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG3504Type IV secretory pathway, VirB9 componentsIntracellular trafficking, secretion, and vesicular transport [U] 82.00
COG3505Type IV secretory pathway, VirD4 component, TraG/TraD family ATPaseIntracellular trafficking, secretion, and vesicular transport [U] 1.00


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A79.00 %
All OrganismsrootAll Organisms21.00 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300005921|Ga0070766_10331919All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium983Open in IMG/M
3300010339|Ga0074046_10171607All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1375Open in IMG/M
3300010343|Ga0074044_10069190All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2390Open in IMG/M
3300012019|Ga0120139_1088088All Organisms → cellular organisms → Bacteria771Open in IMG/M
3300017928|Ga0187806_1147788All Organisms → cellular organisms → Bacteria774Open in IMG/M
3300017948|Ga0187847_10129148All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1385Open in IMG/M
3300018026|Ga0187857_10098186All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1428Open in IMG/M
3300019082|Ga0187852_1085917All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1403Open in IMG/M
3300022881|Ga0224545_1003074All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2935Open in IMG/M
3300027853|Ga0209274_10114339All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1340Open in IMG/M
3300028785|Ga0302201_10388931All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium543Open in IMG/M
3300029922|Ga0311363_11019517All Organisms → cellular organisms → Bacteria723Open in IMG/M
3300030007|Ga0311338_11760677All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium560Open in IMG/M
3300031231|Ga0170824_126608080All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1439Open in IMG/M
3300031233|Ga0302307_10108179All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1453Open in IMG/M
3300031788|Ga0302319_10327987All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1768Open in IMG/M
3300031954|Ga0306926_10447886All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1591Open in IMG/M
3300032160|Ga0311301_10071970All Organisms → cellular organisms → Bacteria7272Open in IMG/M
3300032782|Ga0335082_10176664All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2047Open in IMG/M
3300032892|Ga0335081_11178391All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium875Open in IMG/M
3300032893|Ga0335069_10150137All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2886Open in IMG/M



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
BogEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Bog14.00%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland9.00%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil7.00%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog6.00%
SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Soil6.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil5.00%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa5.00%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland4.00%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment4.00%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil4.00%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil4.00%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil4.00%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil3.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil3.00%
Bog Forest SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil3.00%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil2.00%
Iron-Sulfur Acid SpringEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring1.00%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds1.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.00%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil1.00%
Glacier Forefield SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil1.00%
PermafrostEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost1.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil1.00%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil1.00%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil1.00%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland1.00%
Permafrost SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil1.00%
FenEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Fen1.00%
PalsaEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa1.00%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil1.00%
FenEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Fen1.00%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere1.00%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.00%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001084Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1EnvironmentalOpen in IMG/M
3300004135Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF204 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300005175Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122EnvironmentalOpen in IMG/M
3300005557Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153EnvironmentalOpen in IMG/M
3300005610Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3EnvironmentalOpen in IMG/M
3300005921Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6EnvironmentalOpen in IMG/M
3300006052Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013EnvironmentalOpen in IMG/M
3300006176Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5EnvironmentalOpen in IMG/M
3300009143Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2EnvironmentalOpen in IMG/M
3300009628Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_10EnvironmentalOpen in IMG/M
3300009632Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_40EnvironmentalOpen in IMG/M
3300009640Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_40EnvironmentalOpen in IMG/M
3300009762Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_40EnvironmentalOpen in IMG/M
3300009839Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaGEnvironmentalOpen in IMG/M
3300010159Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3EnvironmentalOpen in IMG/M
3300010339Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3EnvironmentalOpen in IMG/M
3300010343Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300012019Permafrost microbial communities from Nunavut, Canada - A7_5cm_12MEnvironmentalOpen in IMG/M
3300012353Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaGEnvironmentalOpen in IMG/M
3300013105Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaGHost-AssociatedOpen in IMG/M
3300014156Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaGEnvironmentalOpen in IMG/M
3300014161Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_30_metaGEnvironmentalOpen in IMG/M
3300014164Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaGEnvironmentalOpen in IMG/M
3300014169Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaGEnvironmentalOpen in IMG/M
3300014200Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaGEnvironmentalOpen in IMG/M
3300014489Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaGEnvironmentalOpen in IMG/M
3300014969Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaGHost-AssociatedOpen in IMG/M
3300015078Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-11a, vegetated hydrological feature)EnvironmentalOpen in IMG/M
3300016294Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178EnvironmentalOpen in IMG/M
3300017928Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1EnvironmentalOpen in IMG/M
3300017943Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4EnvironmentalOpen in IMG/M
3300017948Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10EnvironmentalOpen in IMG/M
3300017955Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2EnvironmentalOpen in IMG/M
3300017959Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MGEnvironmentalOpen in IMG/M
3300018012Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5EnvironmentalOpen in IMG/M
3300018019Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_150EnvironmentalOpen in IMG/M
3300018026Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_100EnvironmentalOpen in IMG/M
3300018033Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10EnvironmentalOpen in IMG/M
3300018034Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10EnvironmentalOpen in IMG/M
3300018038Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10EnvironmentalOpen in IMG/M
3300018468Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111EnvironmentalOpen in IMG/M
3300019082Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_40EnvironmentalOpen in IMG/M
3300019230Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_30_metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019788Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (PacBio error correction)EnvironmentalOpen in IMG/M
3300021171Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-MEnvironmentalOpen in IMG/M
3300021180Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-OEnvironmentalOpen in IMG/M
3300021420Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-MEnvironmentalOpen in IMG/M
3300021475Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-OEnvironmentalOpen in IMG/M
3300022557Paint Pots_combined assemblyEnvironmentalOpen in IMG/M
3300022881Peat soil microbial communities from Stordalen Mire, Sweden - 717 P1 20-24EnvironmentalOpen in IMG/M
3300023088Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 30-34EnvironmentalOpen in IMG/M
3300023090Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24EnvironmentalOpen in IMG/M
3300024323Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK07EnvironmentalOpen in IMG/M
3300026217Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-045 (SPAdes)EnvironmentalOpen in IMG/M
3300027167Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF034 (SPAdes)EnvironmentalOpen in IMG/M
3300027696Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027853Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)EnvironmentalOpen in IMG/M
3300027895Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300028785Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N3_2EnvironmentalOpen in IMG/M
3300029883I_Bog_E2 coassemblyEnvironmentalOpen in IMG/M
3300029911III_Bog_N2 coassemblyEnvironmentalOpen in IMG/M
3300029913III_Bog_N3 coassemblyEnvironmentalOpen in IMG/M
3300029918Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E2_1EnvironmentalOpen in IMG/M
3300029922III_Fen_E1 coassemblyEnvironmentalOpen in IMG/M
3300029939I_Bog_E3 coassemblyEnvironmentalOpen in IMG/M
3300029945I_Bog_N2 coassemblyEnvironmentalOpen in IMG/M
3300029951III_Palsa_N1 coassemblyEnvironmentalOpen in IMG/M
3300029952II_Bog_N3 coassemblyEnvironmentalOpen in IMG/M
3300029986Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E2_1EnvironmentalOpen in IMG/M
3300030007I_Palsa_E1 coassemblyEnvironmentalOpen in IMG/M
3300030053Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_2EnvironmentalOpen in IMG/M
3300030058Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_1EnvironmentalOpen in IMG/M
3300030688II_Bog_N2 coassemblyEnvironmentalOpen in IMG/M
3300031040Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE6 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031233Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_2EnvironmentalOpen in IMG/M
3300031261Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E1_1EnvironmentalOpen in IMG/M
3300031718Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05EnvironmentalOpen in IMG/M
3300031788Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_2EnvironmentalOpen in IMG/M
3300031823Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05EnvironmentalOpen in IMG/M
3300031954Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)EnvironmentalOpen in IMG/M
3300032076Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)EnvironmentalOpen in IMG/M
3300032160Sb_50d combined assembly (MetaSPAdes)EnvironmentalOpen in IMG/M
3300032782Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1EnvironmentalOpen in IMG/M
3300032805Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2EnvironmentalOpen in IMG/M
3300032828Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4EnvironmentalOpen in IMG/M
3300032892Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5EnvironmentalOpen in IMG/M
3300032893Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1EnvironmentalOpen in IMG/M
3300033134Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2EnvironmentalOpen in IMG/M
3300033822Peat soil microbial communities from Stordalen Mire, Sweden - 714 S1 5-9EnvironmentalOpen in IMG/M
3300033823Peat soil microbial communities from Stordalen Mire, Sweden - 714 S3 30-34EnvironmentalOpen in IMG/M
3300033888Peat soil microbial communities from Stordalen Mire, Sweden - 713 P-3-X1EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12648J13191_100137113300001084Forest SoilVTFSNLPQHPSVRTRKARVLRSREERREFLATCEKTLGSSFSVFVDGDPASIRQLDTDAKKQTFLEHAPVRPWESRPFQGARVEQ*
Ga0058884_100070423300004135Forest SoilMVTFSNLPQHPAVRTRKARVLRSREERREFLATCEKTLGSSFSVFVDGDPASIRQLDTDAKKQTFLEHAPVRPWESRPFQGARVEQ*
Ga0066673_1050739713300005175SoilPAVRTRKARVLRSREERREFLATCEKTLGSSFSVFVDGDPASIRQLDTDAKKQTFLEHAPVRPWESRPFQGARVEQ*
Ga0066704_1005982823300005557SoilMVTFSNLPQHPAVRTRKARVLRSREERREFLAACEKTLGSSFSVFVDGDPASIRQLDTDAKKQTFLEHAPVRPWESRPFQGARVEQ*
Ga0070763_1037823123300005610SoilARVLRSREERREFLATCEKTLGSSFSVFVDGDPASIRQLDTDAKKQTFLEHAPVRPWESRPFQGARVEQ*
Ga0070766_1033191913300005921SoilRVLRSREDRQEFLTSCEKTLGPSFSVFVDGDPRSIRQLDTDTKKQAFLERAPVRPWESRPFQGTAVQQ*
Ga0075029_10077963213300006052WatershedsTRKARVLRSREERREFLATCEKTLGSSFSVFVDGDPASIRQLDTDAKKQTFLEHAPVRPWESRPFQGARVEQ*
Ga0070765_10134008023300006176SoilRTRKAKVLRSREDRQEFLASCEKTLGPSFSVFVDGDPRSIRQLDTDVKKQAFLECAPVRPWESRPFQGAPVQ*
Ga0099792_1053092913300009143Vadose Zone SoilTRKARVLRSREERREFLATCEKNLGSSFSVFVDGDPASIRQLDTDAKKQTFLEHAPVRPWESRQFQGARVEQ*
Ga0116125_117663313300009628PeatlandKARVLRSREERREFLATCEKTLGSSFSVFVDGDPSSIRQLDTDAKKQAFLECAPVRPWESRPFQGASVQ*
Ga0116102_119491613300009632PeatlandQHPAVRTRKARVLRSREERREFLATCEKALGSSFSVFVDGDPASIRQLDTDAKKQTFLEHAPVRPWESRPFQGARVEQ*
Ga0116126_118478713300009640PeatlandTRKAKVLRSREDRREFLTACEETLGSSFSVFVDGDPTSIRQLDTDAKKQAFFESAPVRPWESRPFQGARVQ*
Ga0116130_103724343300009762PeatlandRTRKAKVLRSREDRREFLTACEETLGSSFSVFVDGDPTSIRQLDTDAKKQTFLECAPVRPWESRPFQGARVQ*
Ga0116223_1069499423300009839Peatlands SoilVTFSNLPQHPAVRTRKARVLRSREERREFLATCEKTLGSSFSVFVDGDPASIRQLDTDAKKQTFLEHAPVRPWESRPFQGARVEQ*
Ga0099796_1014701723300010159Vadose Zone SoilMVTFSNLPQHPAVRTRKARVLRSREERREFLATCEKTLGSSFLVFVDGDPASIRQLDTDAKKQTFLEHAPVRPWESRPFQGARVEQ*
Ga0074046_1017160733300010339Bog Forest SoilHPAVRTRKARVLRSREERREFLATCEKTLGSSFSVFVDGDPASIRQLDTDAKKQTFLEHAPVRPWESRPFQGARVEQ*
Ga0074044_1006919053300010343Bog Forest SoilVRTRKARVLRSREERREFLATCEKTLGSSFSVFVDGDPASIRQLDTDAKKQTFLEHAPVRPWESRPFQGARVEQ*
Ga0074044_1111781923300010343Bog Forest SoilRARKARVLRSREDRQEFLTSCEKTLGPSFSVFVDGDPRSIRQLDTDTKKQAFLERAPVRPWESRPFQGTAVQQ*
Ga0126381_10340966723300010376Tropical Forest SoilVVTFSNLRQRPTVRSGRPPVLRTREDRVRFLAACEARFGASFSVFVDGDPASVRQLDTGTRKQSFLEHAPARPWEARPFQGAQTIQ*
Ga0120139_108808823300012019PermafrostRVLRSREERREFLATCEKTLGSSFSVFVDGDPASIRQLDTDAKKQTFLEHAPVRPWESRPFQGARVEQ*
Ga0137367_1070236823300012353Vadose Zone SoilNGVVTFSNLRQRPTLRSGSPPVLRTREDRGRFLAACEARLGSSFSVFVDGDPTSIRQIDTETGKQSFLEYAPVRPWEARPFQRAQIIQ*
Ga0157369_1051644823300013105Corn RhizosphereLPQHPAVRTRKARVLRSREDRQEFLTSCEKTLGPSFSVFVDGDPRSIRQLDTDTKKQAFLERAPVRPWESRTFQGTAVQQ*
Ga0181518_1021916623300014156BogFSNLPQHPAVRTRKAKVLRSREDRREFLTACEETLGSSFSVFVDGDPTSIRQLDTDAKKEAFFECAPVRPWESRPFQGARVQ*
Ga0181518_1055773523300014156BogIRNGLVTFTNLPQHPAVRTRKAKVLRSREDRREFLAVCEETLGSSFSVFVDGDPSSIRQLDTDAKKQTFLEHAPVRPWESRPFQGTRVEQ*
Ga0181529_1065048223300014161BogNLPQHPAVRTRKAKVLRSREDRREFLTACEETLGSSFSVFVDGDPTSIRQLDTDAKKQAFFECAPVRPWESRPFQGARVQ*
Ga0181532_1055240423300014164BogRTRKARVLRSREDRREFLAVCEETLGSSFSVFVDGDPTSIRQLDTDAKKQAFLECAPVRPWESRPFQGAPVQ*
Ga0181531_1042608113300014169BogHPAVRTRKARVLRSREERREFLATCEKTLGSSFSVFVDGDPSSIRQLDTDAKKQTFLEHAPVRPWESRQFQGARVEQ*
Ga0181526_1038430323300014200BogVPQHPTVRTRKARVLRSREDRREFLTSCEKTLGPSFSVFVDGDPRSIRQLDTDTKKQAFLERAPVRPWESRPFQGTAVQQ*
Ga0182018_1024057323300014489PalsaSNLPQHPAVRTRKARVLRSREERREFLATCEKTLGSSFSVFVDGDPASIRQLDTDAKKQTFLEHAPVRPWESRPFQGARVEQ*
Ga0157376_1270737423300014969Miscanthus RhizosphereARVLRSREERREFLATCEKNLGSSFSVFVDGDPASIRQLDTDAKKQTFLEHAPVRPWESRPFQGARVEQ*
Ga0167660_100588113300015078Glacier Forefield SoilFSNLPQHPAVRTRKARVLRSREERREFLATCEKTLGSSFSVFVDGDPASIRQLDTDAKKQTFLEHAPVRPWESRSFQGARVEQ*
Ga0182041_1202804923300016294SoilGEIRNGVVTFSNLPQHPAVRTRKARVLRSREERREFLTACEKTFGSSFSVFVDGDPASIRQLDTDAKKQAFLEHAPVRPWESRQFQGARVEQ
Ga0187806_114778813300017928Freshwater SedimentRVLRSREERREFLATCEKTLGPSFSVFVDGDPASIRQLDTDAQKQTFLERAPVRPWESRPFQGARVAQ
Ga0187819_1087294823300017943Freshwater SedimentHPAVRTRKARVLRSREERREFLAACEKTFGSSFSVFVDGDPASIRQLDTDVKKQAFLERAPVRPWESRQFQGARVEQ
Ga0187847_1012914833300017948PeatlandGMVTFSNLPQHPAIRTRKAKVLRSRDDRQEFLASCEKTLGPSFSVFVDGDPRSIRQLDTDVKKQAFLECAPVRPWESRPFQGAPVQ
Ga0187847_1021434323300017948PeatlandTFSNLPQHPAVRTRKAKVLRSREDRREFLTACEDTLGSSFSVFVDGDPTSIRQLDTDAKKQAFFECAPVRPWECRPFQGARVQ
Ga0187817_1046833113300017955Freshwater SedimentGMVTFSNLPQHPAVRTRKARVLRSREERREFLATCEKTLGSSFSVFVDGDPASIRQLDTDAKKQTFLEHAPVRPWESRPFQGARVEQ
Ga0187779_1042002523300017959Tropical PeatlandPAVRTRKARVLRSREERREFLTACEKTFGSSFSVFVDGDPTSIRQLDTDAKKQVFLEQAPVRPWESRQFQGARVEQ
Ga0187810_1037509723300018012Freshwater SedimentAVRTRKARVLRSREERREFLAACEKTFGSSFSVFVDGDPASIRQLDTDVKKRAFLESGPVRPWESRQFQGARVEQ
Ga0187874_1040332813300018019PeatlandGMVTFSNLPQHPAIRTRKTKVLRSREDRQEFLTSCEKTLGPSFSVFVDGDPRSIRQLDTDTKKQAFLERAPVRPWESRPFQGTAVQQ
Ga0187857_1009818633300018026PeatlandVRTRKARVLRSREERREFLATCEKNLGSSFSVFVDGDPASIRQLDTDAKKQTFLEHAPVRPWESRPFQGARVEQ
Ga0187867_1039943213300018033PeatlandNVPQHPTVRTRKARVLRSRQDRREFLTSCEKTLGPSFSVFVDGDPRSIRQLDTDTKKQAFLERAPVRPWESRPFQGTAVQQ
Ga0187863_1059648423300018034PeatlandFSNVPQHPTVRTRKARVLRSREDRQEFLTSCEKTLGPSFSVFVDGDPRSIRQLDTDTKKQAFLERAPVRPWESRPFQGTAVQQ
Ga0187855_1029444413300018038PeatlandRKARVLRSREERREFLATCEKTLGSSFSVFVDGDPSSIRQLDTDAKKQTFLEHAPVRPWESRQFQGARVEQ
Ga0066662_1135348713300018468Grasslands SoilRTRKARVLRSREERRELLATCEITLGSRFSVFVDGDPASIRQLDTDAKKQTLLEHPPVRPWESRPFQGARVEH
Ga0187852_108591733300019082PeatlandSGEIRNGMVTFSNLPQHPAVRTRKARVLRSREERREFLATCEKTLGSSFSVFVDGDPASIRQLDTDAKKQTFLEHAPVRPWESRPFQGARVEQ
Ga0181501_115089723300019230PeatlandMVTFSNLPQHPAIRTRKTRVLRSREDRREFLAACEESLGSSFSVFVDGDPTSIRELDTDAKKQAFLECAPVR
Ga0182028_105204113300019788FenAVRTRKAKVLRSREDRREFLTACEETLGSSFSVFVDGDPTSIRQLDTDAKKQTFLECAPVRPWESRPFQGARVQ
Ga0210405_1081951613300021171SoilGMVTFSNLAQHPAIRTRKAKVLRSREDRQEFLASCEKTLGPSFSVFVDGDPRSIRQLDTDVKKQAFLECAPVRPWESRPFQGAPVQ
Ga0210396_1150233013300021180SoilLPQHPAVRTRKARVLRSREERREFLATCEKTLGSSFSVFVDGDPASIRQLDTDAKKQTFLEHAPVRPWESRPFQGARVEQ
Ga0210394_1020652513300021420SoilIRNGMVTFSNVPQHPTVRTRKARVLRSREDRQEFLTSCEKTLGPSFSVFVDGDPRSIRQLDTDTKKQAFLERAPVRPWESRPFQGTAVQQ
Ga0210392_1036373223300021475SoilRKARVLRSREERREFLATCEKTLGSSFSVFVDGDPASIRQLDTDAKKQTFLEHAPVRPWESRPFQGARVEQ
Ga0212123_1037208623300022557Iron-Sulfur Acid SpringSGEIRNGMVTFSNLPQHPAVRTRKARVLRSREERREFLATCEETLGSSFSVFVDGDPASIRQLDTDAKKQTFLEHAPVRPWESRPFQGARVEQ
Ga0224545_100307413300022881SoilHPAVRTRKARVLRSREDRREFLAVCEETLGSSFSVFVDGDPKSIRQLDTDAKKQAFLECAPVRPWESRPFQGAPVH
Ga0224555_100206713300023088SoilQHPAVRTRKAKVLRSREDRREFLTACEETLGSSFSVFVDGDPASIRQLDTDAKKQTFLECAPVRPWESRPFQGARVQ
Ga0224558_107699713300023090SoilGEIRNGIVTFSNLPQHPAVRTRKAKVLRSREDRREFLTACEETLGSSFSVFVDGDPASIRQLDTDAKKQTFLECAPVRPWESRPFQGARVQ
Ga0247666_101590043300024323SoilIRNGVVTFSNLPQHPAVRTRKARVLRSREERREFLATCEKTLGSSFSVFVDGDPGSIRQLDTDAKKQTFLEHAPVRPWESRPFQGARVEQ
Ga0209871_102834513300026217Permafrost SoilNGMVTFSNLPQHPAVRTRKARVLRSREERREFLATCEKTLGSSFSVFVDGDPASIRQLDTDAKKQTFLEHAPVRPWESRPFQGARVEQ
Ga0208096_10708723300027167Forest SoilFSNLPQHPAVRTRKARVLRSREERREFLATCEKTLGSSFSVFVDGDPASIRQLDTDAKKQTFLEHAPVRPWESRPFQGARVEQ
Ga0208696_106545513300027696Peatlands SoilIRNGMVTFSNLPQHPAVRTRKARVLRSREERREFLATCEKNLGSSFSVFVDGDPASIRQLDTDAKKQTFLEHAPVRPWESRPFQGARVEQ
Ga0209274_1011433933300027853SoilARVLRSREDRQEFLTSCEKTLGPSFSVFVDGDPRSIRQLDTDTKKQAFLERAPVRPWESRPFQGTAVQQ
Ga0209624_1048623913300027895Forest SoilPAVRTRKARVLRSREERREFLATCEKTLGSSFSVFVDGDPASIRQLDTDAKKQTFLEHAPVRPWESRPFQGARVEQ
Ga0302201_1038893113300028785BogRVLRSREDRQEFLTSCEKTLGPSFSVFVDGDPRSIRQLDTDTKKQAFLERAPVRPWESRPFQGTAVQQ
Ga0311327_1008018513300029883BogTFSNLPQHPAVRTRKAKVLRSREDRREFLTACEETLGSSFSVFVDGDPTSIRQLDTDAKKQAFFECAPVRPWESRPFQGARVQ
Ga0311361_1055767023300029911BogSNLPQHPAVRTRKARVLRSREERREFLATCEKTIGSSFSVFVDGDPASIRQLDTDAKKQTFLEHAPVRPWESRPFQGARVEQ
Ga0311362_1121462523300029913BogSNVPQHPTVRTRKARVLRSREDRREFLTSCEKTLGPSFSVFVDGDPRSIRQLDTDTKKQAFLERAPVRPWESRPFQGTAVQQ
Ga0302143_104491813300029918BogQHPAVRTRKAKVLRSREDRREFLTACEETLGSSFSVFVDGDPTSIRQLDTDAKKQAFFECAPVRPWESRPFQGARVQ
Ga0311363_1101951723300029922FenLRSREDRQEFLTSCEKTLGPSFSVFVDGDPRSIRQLDTDTKKQAFLERAPVRPWESRPFQGTAVQQ
Ga0311328_1048275913300029939BogLPQHPAVRTRKARVLRSREERREFLATCEKNLGSSFSVFVDGDPASIRQLDTDAKKQTFLEHAPVRPWESRPFQGARVEQ
Ga0311330_1035579113300029945BogIRNGIVTFSNLPQHPAVRTRKAKVLRSREDRREFLTACEETLGSSFSVFVDGDPTSIRQLDTDAKKQAFFECAPVRPWESRPFQGARVQ
Ga0311371_1188678923300029951PalsaTFSNLPQHPAVRTRKARVLRSREERREFLATCEKTIGSSFSVFVDGDPASIRQLDTDAKKQTFLEHAPVRPWESRPFQGARVEQ
Ga0311346_1055989923300029952BogVRTRKARVLRSREDRQEFLTSCEKTLGPSFSVFVDGDPRSIRQLDTDTKKQVFLERAPVRPWESRPFQGTAVQQ
Ga0311346_1071726513300029952BogPQHPTVRTRKARVLRSREDRQEFLTSCEKTLGPSFSVFVDGDPRSIRQLDTDTKKQAFLERAPVRPWESRPFQGTAVQQ
Ga0302188_1010681723300029986BogIVTFSNLPQHPAVRTRKAKVLRSREDRREFLTACEETLGSSFSVFVDGDPTSIRQLDTDAKKQAFFECAPVRPWESRPFQGARVQ
Ga0311338_1176067713300030007PalsaVLRSREDRREFLTSCEKTLGPSFSVFVDGDPRSIRQLDTDTKKQAFLERAPVRPWESRPFQGTAVQQ
Ga0302177_1051437313300030053PalsaPTVRTRKARVLRSREDRREFLTSCEKTLGPSFSVFVDGDPRSIRQLDTDTKKQAFLERAPVRPWESRPFQGTAVQQ
Ga0302179_1002676813300030058PalsaRNGLVTFSNLPQHPAVRTRKARVLRSREERREFLATCEKTLGSSFSVFVDGDPASIRQLDTDAKKQTFLEHAPVRPWESRPFQGARVEQ
Ga0311345_1046959213300030688BogRNGMVTFSNLPQHPAVRTRKARVLRSREERREFLATCEKNLGSSFSVFVDGDPASIRQLDTDAKKQTFLEHAPVRPWESRPFQGARVEQ
Ga0265754_101397413300031040SoilSNLPQHPAVRTRKARVLRSREERREFLATCEKTLGSSFSVFVDGDPASIRQLDTDAKKQTFLEHAPVRPWESRPFQGTRVEQ
Ga0170824_12660808013300031231Forest SoilTFSNVPQHPTVRTRKARVLRSREDRREFLTSCEKTLGPSFSVFVDGDPRSIRQLDTDTKKQAFLEHAPVRPWESRPFQGTAVQQ
Ga0302307_1010817933300031233PalsaVTFSNLPQHPAVRTRKARVLRSREERREFLATCEKTIGSSFSVFVDGDPASIRQLDTDAKKQTFLEHAPVRPWESRPFQGARVEQ
Ga0302140_1028055933300031261BogTRKARVLRSREERREFLATCEKTLGSSFSVFVDGDPASIRQLDTDAKKQTFLEHAPVRPWESRPFQGARVEQ
Ga0307474_1164366413300031718Hardwood Forest SoilPQHPAIRTRKSKVLRSREDRREFLAACEESLGSSFSVFVDGDPTSIRELDTDAKKQAFLECAPVRPWESRPFQGATVQ
Ga0302319_1032798713300031788BogPQHPAVRTRKARVLRSREERREFLATCEKTIGSSFSVFVDGDPASIRQLDTDAKKQTFLEHAPVRPWESRPFQGARVEQ
Ga0302319_1055059013300031788BogGEIRNGMVTFSNLPQHPAVRTRKARVLRSREERREFLATCEKNLGSSFSVFVDGDPASIRQLDTDAKKQTFLEHAPVRPWESRPFQGARVEQ
Ga0307478_1055833223300031823Hardwood Forest SoilMVTFSNVPQHPTVRTRKARVLRSREDRQEFLASCEKTLGPSFSVFVDGDPRSIRQLDTDTKKQAFLERAPVRPWESRPFQGTAVQQ
Ga0306926_1044788613300031954SoilSNLSQHPAVRTRKARVLRSREERREFLTACEKTLGSSFSVFVDGDPASIRQLDTDAKKQAFLEHAPVRPWESRQFQGARVEQ
Ga0306924_1060266523300032076SoilARVLRCREERREFLTACEKTLGSSFSVFVDGDPASIRQLDTDAKKQAFLEHAPVRPWESRQFQGARVEQ
Ga0311301_10071970103300032160Peatlands SoilMVTFSNLPQHPAVRTRKARVLRSREERREFLATCEKTLGSSFSVFVDGDPASIRQLDTDAKKQTFLEHAPVRPWESRPFQGARVEQ
Ga0311301_1127406313300032160Peatlands SoilMHPAVRTRKARVLRSREERREFLATCEKTLGSSFSVFVDGDPASIRQLDTDAKKQTFLEHAPVRPWESRQFQGARVEQ
Ga0335082_1017666413300032782SoilGVVTFSNLPQHPAIRTRKARVLRSREDRREFLAACEESHGSSFSVFVDGDPRSIRQLDTDAKKQAFLEGAPVRPWESRPFQGTPLQ
Ga0335078_1188160823300032805SoilRNGMVTFSNLPQHPAVRTRKARVLRCREERREFLTACEKTLGSSFSVFVDGDPASIRQLDTDAKKQAFLEHAPVRPWESRQFQGARVEQ
Ga0335080_1099076913300032828SoilVRNGRPPALRTRDERREFLTACEANYGSSYAVFVDGDPASIRQLDTADKKKAFLDTAPVRPWVARAFQGTQAQQ
Ga0335081_1117839123300032892SoilRVLRSREDRREFLAACEESHGSSFSVFVDGDPRSIRQLDTDAKKQAFLEGAPVRPWESRPFQGTPLQ
Ga0335081_1252804323300032892SoilSNLPQHPAIRTRKARVLRSREDRREFLAACEESHGSSFSVFVDGDPRSIRQLDTDAKKQAFLEGAPVRPWESRPFQGTPLQ
Ga0335069_1015013753300032893SoilRTRKARVLRSREDRREFLAACEESHGSSFSVFVDGDPRSIRQLDTDAKKHAFLEGAPVRPWESRPFQRTPLQ
Ga0335073_1145039323300033134SoilRKARVLRSREDRREFLASCEESHGSSFSVFVDGDPRSIRQLDTDAKKQAFLECAPVRPWESRPFQRTPLQ
Ga0334828_002559_11_2653300033822SoilVTFSNLPQHPAVRTRKAKVLRSREDRREFLTACEETLGSSFSVFVDGDPASIRQLDTDAKKQTFLECAPVRPWESRPFQGARVQ
Ga0334837_002000_13320_135413300033823SoilVRTRKAKVLRSREDRREFLTACEETLGSSFSVFVDGDPTSIRQLDTDAKKQAFFECAPVRPWESRPFQGARVQ
Ga0334792_155935_1_2373300033888SoilQHPAVRTRKARVLRSREDRREFLAVCEETLGSSFSVFVDGDPASIRQLDTDAKKQTFLEHAPVRPWESRQFQGARAEQ


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.