NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F105546

Metagenome / Metatranscriptome Family F105546

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F105546
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 48 residues
Representative Sequence LIQFGWSQTLPLALAVAVLPVLAAALTIARRPDAAAELRAAESA
Number of Associated Samples 87
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 96.00 %
% of genes from short scaffolds (< 2000 bps) 88.00 %
Associated GOLD sequencing projects 85
AlphaFold2 3D model prediction Yes
3D model pTM-score0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (93.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(34.000 % of family members)
Environment Ontology (ENVO) Unclassified
(28.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(51.000 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: Yes Secondary Structure distribution: α-helix: 48.61%    β-sheet: 0.00%    Coil/Unstructured: 51.39%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.50
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF02687FtsX 6.00
PF00005ABC_tran 3.00
PF01063Aminotran_4 1.00
PF12802MarR_2 1.00
PF00155Aminotran_1_2 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG0115Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyaseAmino acid transport and metabolism [E] 2.00


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A93.00 %
All OrganismsrootAll Organisms7.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300003505|JGIcombinedJ51221_10395170Not Available561Open in IMG/M
3300005439|Ga0070711_100644684Not Available887Open in IMG/M
3300005560|Ga0066670_10097622Not Available1639Open in IMG/M
3300005602|Ga0070762_10959517Not Available585Open in IMG/M
3300005610|Ga0070763_10069822Not Available1715Open in IMG/M
3300005900|Ga0075272_1097617All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia563Open in IMG/M
3300006176|Ga0070765_101731472All Organisms → cellular organisms → Bacteria587Open in IMG/M
3300006755|Ga0079222_10275468Not Available1079Open in IMG/M
3300006755|Ga0079222_11353899Not Available654Open in IMG/M
3300006755|Ga0079222_12266091Not Available541Open in IMG/M
3300006806|Ga0079220_12074955Not Available509Open in IMG/M
3300006903|Ga0075426_10529668Not Available877Open in IMG/M
3300009174|Ga0105241_10919953Not Available813Open in IMG/M
3300009520|Ga0116214_1196996Not Available757Open in IMG/M
3300009520|Ga0116214_1446165Not Available506Open in IMG/M
3300009683|Ga0116224_10220696Not Available906Open in IMG/M
3300009700|Ga0116217_10230014Not Available1209Open in IMG/M
3300009839|Ga0116223_10027967All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces3865Open in IMG/M
3300010154|Ga0127503_10486984Not Available625Open in IMG/M
3300010154|Ga0127503_10510439Not Available785Open in IMG/M
3300010162|Ga0131853_11380966Not Available517Open in IMG/M
3300010343|Ga0074044_10604383Not Available716Open in IMG/M
3300010361|Ga0126378_10565787Not Available1251Open in IMG/M
3300010373|Ga0134128_12213523Not Available606Open in IMG/M
3300010880|Ga0126350_10553733Not Available926Open in IMG/M
3300012202|Ga0137363_11576295Not Available548Open in IMG/M
3300012210|Ga0137378_11858351Not Available505Open in IMG/M
3300012357|Ga0137384_10050020All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces3457Open in IMG/M
3300016422|Ga0182039_10912472Not Available785Open in IMG/M
3300017822|Ga0187802_10306885Not Available619Open in IMG/M
3300017928|Ga0187806_1005862Not Available3361Open in IMG/M
3300017937|Ga0187809_10076794Not Available1099Open in IMG/M
3300017942|Ga0187808_10527882Not Available548Open in IMG/M
3300017948|Ga0187847_10626753Not Available602Open in IMG/M
3300017959|Ga0187779_10492709Not Available810Open in IMG/M
3300017972|Ga0187781_11426108Not Available513Open in IMG/M
3300018038|Ga0187855_10474020Not Available729Open in IMG/M
3300018043|Ga0187887_10426871Not Available782Open in IMG/M
3300018058|Ga0187766_10743941Not Available680Open in IMG/M
3300018085|Ga0187772_10636561Not Available761Open in IMG/M
3300020582|Ga0210395_10059989Not Available2790Open in IMG/M
3300020582|Ga0210395_10922373Not Available648Open in IMG/M
3300020582|Ga0210395_11217059Not Available553Open in IMG/M
3300021178|Ga0210408_10971270Not Available658Open in IMG/M
3300021180|Ga0210396_11765164Not Available501Open in IMG/M
3300021401|Ga0210393_10958679Not Available693Open in IMG/M
3300021401|Ga0210393_11103933Not Available640Open in IMG/M
3300021403|Ga0210397_10859468Not Available701Open in IMG/M
3300021474|Ga0210390_10296436Not Available1370Open in IMG/M
3300021476|Ga0187846_10192508Not Available856Open in IMG/M
3300021478|Ga0210402_11286537Not Available658Open in IMG/M
3300024227|Ga0228598_1128275Not Available516Open in IMG/M
3300026340|Ga0257162_1046082Not Available550Open in IMG/M
3300027842|Ga0209580_10415389Not Available671Open in IMG/M
3300027854|Ga0209517_10019170All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria6496Open in IMG/M
3300027855|Ga0209693_10042057Not Available2245Open in IMG/M
3300027908|Ga0209006_11185334Not Available598Open in IMG/M
3300028801|Ga0302226_10134066Not Available1084Open in IMG/M
3300028879|Ga0302229_10237448Not Available827Open in IMG/M
3300029943|Ga0311340_10235207Not Available1805Open in IMG/M
3300029951|Ga0311371_11496820Not Available752Open in IMG/M
3300030580|Ga0311355_10818469Not Available853Open in IMG/M
3300031234|Ga0302325_12006091Not Available714Open in IMG/M
3300031234|Ga0302325_12743966Not Available579Open in IMG/M
3300031680|Ga0318574_10495797Not Available715Open in IMG/M
3300031681|Ga0318572_10264956Not Available1012Open in IMG/M
3300031681|Ga0318572_10339683Not Available890Open in IMG/M
3300031708|Ga0310686_100277756Not Available1107Open in IMG/M
3300031718|Ga0307474_11618611Not Available508Open in IMG/M
3300031723|Ga0318493_10135613Not Available1264Open in IMG/M
3300031744|Ga0306918_11502891Not Available515Open in IMG/M
3300031748|Ga0318492_10019046Not Available2955Open in IMG/M
3300031748|Ga0318492_10265368Not Available889Open in IMG/M
3300031751|Ga0318494_10227646Not Available1066Open in IMG/M
3300031770|Ga0318521_10027171Not Available2759Open in IMG/M
3300031777|Ga0318543_10312928Not Available702Open in IMG/M
3300031778|Ga0318498_10014355All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces3257Open in IMG/M
3300031781|Ga0318547_10031821Not Available2721Open in IMG/M
3300031782|Ga0318552_10060113All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces1819Open in IMG/M
3300031782|Ga0318552_10605735Not Available559Open in IMG/M
3300031798|Ga0318523_10405954Not Available677Open in IMG/M
3300031819|Ga0318568_10169912Not Available1339Open in IMG/M
3300031821|Ga0318567_10475738Not Available709Open in IMG/M
3300031831|Ga0318564_10445409Not Available564Open in IMG/M
3300031845|Ga0318511_10077093Not Available1387Open in IMG/M
3300031896|Ga0318551_10549047Not Available665Open in IMG/M
3300031897|Ga0318520_10400450Not Available839Open in IMG/M
3300031910|Ga0306923_12220883Not Available550Open in IMG/M
3300031939|Ga0308174_10128480Not Available1859Open in IMG/M
3300031954|Ga0306926_12517440Not Available564Open in IMG/M
3300031954|Ga0306926_12790161Not Available528Open in IMG/M
3300032054|Ga0318570_10517516Not Available544Open in IMG/M
3300032064|Ga0318510_10145806Not Available932Open in IMG/M
3300032068|Ga0318553_10007704Not Available4581Open in IMG/M
3300032075|Ga0310890_10493224Not Available930Open in IMG/M
3300032160|Ga0311301_10855532Not Available1235Open in IMG/M
3300032160|Ga0311301_12687489Not Available548Open in IMG/M
3300032205|Ga0307472_102591445Not Available517Open in IMG/M
3300032897|Ga0335071_11184744Not Available709Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil34.00%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil8.00%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa7.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil5.00%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment4.00%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil4.00%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland4.00%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil4.00%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland3.00%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil3.00%
SoilEnvironmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil2.00%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil2.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil2.00%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil2.00%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil2.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.00%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil1.00%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil1.00%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil1.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil1.00%
Rice Paddy SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil1.00%
Bog Forest SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil1.00%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere1.00%
BiofilmEnvironmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm1.00%
Termite GutHost-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut1.00%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere1.00%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere1.00%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere1.00%
Boreal Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil1.00%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300003505Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)EnvironmentalOpen in IMG/M
3300005439Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaGEnvironmentalOpen in IMG/M
3300005560Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119EnvironmentalOpen in IMG/M
3300005602Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2EnvironmentalOpen in IMG/M
3300005610Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3EnvironmentalOpen in IMG/M
3300005900Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_0N_404EnvironmentalOpen in IMG/M
3300006176Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5EnvironmentalOpen in IMG/M
3300006755Agricultural soil microbial communities from Georgia to study Nitrogen management - GA PlitterEnvironmentalOpen in IMG/M
3300006806Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100EnvironmentalOpen in IMG/M
3300006903Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5Host-AssociatedOpen in IMG/M
3300009174Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaGHost-AssociatedOpen in IMG/M
3300009520Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaGEnvironmentalOpen in IMG/M
3300009683Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaGEnvironmentalOpen in IMG/M
3300009700Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaGEnvironmentalOpen in IMG/M
3300009839Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaGEnvironmentalOpen in IMG/M
3300010154Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010162Labiotermes labralis P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Lab288 P1 (version 2)Host-AssociatedOpen in IMG/M
3300010343Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010373Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4EnvironmentalOpen in IMG/M
3300010880Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012210Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012357Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaGEnvironmentalOpen in IMG/M
3300016422Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111EnvironmentalOpen in IMG/M
3300017822Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2EnvironmentalOpen in IMG/M
3300017928Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1EnvironmentalOpen in IMG/M
3300017937Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4EnvironmentalOpen in IMG/M
3300017942Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3EnvironmentalOpen in IMG/M
3300017948Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10EnvironmentalOpen in IMG/M
3300017959Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MGEnvironmentalOpen in IMG/M
3300017972Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300018038Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10EnvironmentalOpen in IMG/M
3300018043Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10EnvironmentalOpen in IMG/M
3300018058Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MGEnvironmentalOpen in IMG/M
3300018085Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300020582Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-OEnvironmentalOpen in IMG/M
3300021178Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-MEnvironmentalOpen in IMG/M
3300021180Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-OEnvironmentalOpen in IMG/M
3300021401Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-OEnvironmentalOpen in IMG/M
3300021403Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-OEnvironmentalOpen in IMG/M
3300021474Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-OEnvironmentalOpen in IMG/M
3300021476Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)EnvironmentalOpen in IMG/M
3300021478Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-MEnvironmentalOpen in IMG/M
3300024227Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4Host-AssociatedOpen in IMG/M
3300026340Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-04-AEnvironmentalOpen in IMG/M
3300027842Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027854Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)EnvironmentalOpen in IMG/M
3300027855Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)EnvironmentalOpen in IMG/M
3300027908Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300028801Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_3EnvironmentalOpen in IMG/M
3300028879Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_3EnvironmentalOpen in IMG/M
3300029943I_Palsa_N3 coassemblyEnvironmentalOpen in IMG/M
3300029951III_Palsa_N1 coassemblyEnvironmentalOpen in IMG/M
3300030580II_Palsa_N1 coassemblyEnvironmentalOpen in IMG/M
3300031234Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2EnvironmentalOpen in IMG/M
3300031680Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22EnvironmentalOpen in IMG/M
3300031681Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031718Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05EnvironmentalOpen in IMG/M
3300031723Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23EnvironmentalOpen in IMG/M
3300031744Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)EnvironmentalOpen in IMG/M
3300031748Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22EnvironmentalOpen in IMG/M
3300031751Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24EnvironmentalOpen in IMG/M
3300031770Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17EnvironmentalOpen in IMG/M
3300031777Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24EnvironmentalOpen in IMG/M
3300031778Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24EnvironmentalOpen in IMG/M
3300031781Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20EnvironmentalOpen in IMG/M
3300031782Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20EnvironmentalOpen in IMG/M
3300031798Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19EnvironmentalOpen in IMG/M
3300031819Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21EnvironmentalOpen in IMG/M
3300031821Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20EnvironmentalOpen in IMG/M
3300031831Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20EnvironmentalOpen in IMG/M
3300031845Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18EnvironmentalOpen in IMG/M
3300031896Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19EnvironmentalOpen in IMG/M
3300031897Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16EnvironmentalOpen in IMG/M
3300031910Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)EnvironmentalOpen in IMG/M
3300031939Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2EnvironmentalOpen in IMG/M
3300031954Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)EnvironmentalOpen in IMG/M
3300032054Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23EnvironmentalOpen in IMG/M
3300032064Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17EnvironmentalOpen in IMG/M
3300032068Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21EnvironmentalOpen in IMG/M
3300032075Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3EnvironmentalOpen in IMG/M
3300032160Sb_50d combined assembly (MetaSPAdes)EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300032805Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2EnvironmentalOpen in IMG/M
3300032897Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGIcombinedJ51221_1039517023300003505Forest SoilVLIQFSWSQTLPLALAIAVLPVLAAALTIARRPDAAAELRAAESA*
Ga0070711_10064468413300005439Corn, Switchgrass And Miscanthus RhizospherePPVLIQLGWSQILPLAVAVAVLPVLAAGLTIARRPDAAAELRAAESA*
Ga0066670_1009762223300005560SoilPVPPVLIQFGWSQTLTLALAVAVLPVLVAAFTIARRPDAAAELRAAEAT*
Ga0070762_1095951723300005602SoilPVTIQFDWAQTLPLALAVATLPVLVAAAVIARRSDPAAELRTAEAA*
Ga0070763_1006982213300005610SoilPPVLIQFSWSQTLPLALAIAVLPVLAAALTIARRPDAAAELRAAESA*
Ga0075272_109761723300005900Rice Paddy SoilRIDLAWPQTLTLAVVVAVLPVLAVALTVARRPDPAAQLRAAESG*
Ga0070765_10173147213300006176SoilVPPVLIQFNWSQTLPLALAIAVLPVLAAALTIARRPDAAAELRATESA*
Ga0079222_1027546813300006755Agricultural SoilTAATRPVPPVLIQFGWSQILPLALAVAVLPVLAAAFTIARRPDAAAELRAAESA*
Ga0079222_1135389923300006755Agricultural SoilVLIPFGWTQTLLLALAVAVLPVLASALTLARPPDSAAELTADEAA*
Ga0079222_1226609123300006755Agricultural SoilVLIQFGWAQTLLLALAVAVLPVLAASLTLARRPDAAAQLRAAEAA*
Ga0079220_1207495513300006806Agricultural SoilPVPPVLIQLGWSQILPLALAVAVLPVLAAGLTIARRPDAAAELRAAESA*
Ga0075426_1052966823300006903Populus RhizospherePPVLIQLGWSQILLLALAVAVLPVLAAGLTIARRPDAAAELRAAEST*
Ga0105241_1091995323300009174Corn RhizosphereLTSAATAPVPPVLIQLGWSQILALALAVAVLPVLAAGLTIARRPDAAAELRAAESA*
Ga0116214_119699623300009520Peatlands SoilPPVRIQFGWSQTLPLALAVAVLPVLAAALTIARRPDAAAELRASESA*
Ga0116214_144616513300009520Peatlands SoilTRPVPPVLIQFAWAQTLALALAVAVLPVLAASLTIARRPDPAAELRAAEAA*
Ga0116224_1022069623300009683Peatlands SoilVPAITLTSSATVPVPPVRIQFGWSQTLPLALAVAVLPVLAAALTIARRPDAAAELRASESA*
Ga0116217_1023001423300009700Peatlands SoilWSQTLPLALAVAVLPVLAAALTIARRPDAAAELRASESA*
Ga0116223_1002796733300009839Peatlands SoilPLALAVAVLPVLAAALTIARRPDAAAELRASESA*
Ga0127503_1048698413300010154SoilVPAVLIKFDWSQTLPLALAVAVLPVLAAALTIARRPDAAAELRAAEAT*
Ga0127503_1051043923300010154SoilVPPVLIQFGWSQALLLALAVAVLPVLAAALTLARRPDAAAELRAAESA*
Ga0131853_1138096623300010162Termite GutQTLPLALAVATLPVLVAEAVVARRPDPAAELRTAEAA*
Ga0074044_1060438313300010343Bog Forest SoilTARSPVPPVIIQFDWAQTLPLALAVATLPVLVAAAVIARRPDPAADLRTAEAA*
Ga0126378_1056578713300010361Tropical Forest SoilIEFGWAQTLALALAVAVLPVLAAALTVARRPDAAAELRTAEAT*
Ga0134128_1221352313300010373Terrestrial SoilAPVPPVLIQLGWSQILPLALAVAVLPVLAAGLTIARRPDAAAELRAAESA*
Ga0126350_1055373323300010880Boreal Forest SoilLVPAVTLTAVATTPVPPVIIQFGWLQTLALALAVAVLPVLAAALTIIRRPDAAAELRAAESA*
Ga0137363_1157629513300012202Vadose Zone SoilKPVPPVLIEFGWSQTLPLALAVAVLPVLAAALTIARRPDAAAELRAAEAT*
Ga0137378_1185835123300012210Vadose Zone SoilVLIQFGWSQTLPLALAVAVLPVLVAAFTIARRPDAAAELRAAEAT*
Ga0137384_1005002013300012357Vadose Zone SoilQTLLLALAVAVLPVLAASLTLARRPDAAAQLRAAEAA*
Ga0182039_1091247223300016422SoilAATRPVPPVLIQFGWSQTLLLALAVAVLPVLAAELTIARRPDAAAELRAAESA
Ga0187802_1030688523300017822Freshwater SedimentARRGHRRAARPAVTLTVTASSPVPPVIIQLDWAQTLPLALAVATLPVLVAAAVIARRPDPAAELRTAESA
Ga0187806_100586233300017928Freshwater SedimentVIIQLDWAQTLPLALAVATLPVLVAAAVIARRPDPAAELRTAESA
Ga0187809_1007679413300017937Freshwater SedimentPPVLIQFNWSQTVPLALAVAVLPVLAAALTIARRPDAAAELRAAESA
Ga0187808_1052788223300017942Freshwater SedimentAITLSPSATEPVPPVLIQFGWSQTLPLALAVAVLPVLAAGLTITRRPDAAAALRAAEAA
Ga0187847_1062675313300017948PeatlandATTPVPPVLIQFSWSQTLPLALAIAVLPVLAAALTIARRPDAAAELRAAETA
Ga0187779_1049270923300017959Tropical PeatlandAATRPVPPVLIQLGWSQTIPLALAVAVLPVLAAAFTIARRPDAAAELRAAESA
Ga0187781_1142610813300017972Tropical PeatlandIQFGWSQTLPLALAVAVLPVLAAGLTITRRPDAAAALRAAEAA
Ga0187855_1047402023300018038PeatlandLIQFSWSQTLPLALAGAVLPVLAAALTVARRPDAAVELRAAESA
Ga0187887_1042687113300018043PeatlandITLTTSATTPVPPALVQFAWSQTLLLALAVAVLPVLAAFLTIARRPDPAAELRAAEAA
Ga0187766_1074394113300018058Tropical PeatlandPVLIQFSWAQTLPLALAVAVLPVLAAALTIMRRPDAAAELRAAEAA
Ga0187772_1063656123300018085Tropical PeatlandQFAWPQVLLLALAVAVLPVLTVTLTIARRPDAAAELRAAEAA
Ga0210395_1005998913300020582SoilVLIQFGWSQTLPLALAVAVLPVLAAALTIARRPDAAAQLRAAESA
Ga0210395_1092237313300020582SoilLIQFGWSQTLPLALAVAVLPVLAAALTIARRPDAAAELRAAESA
Ga0210395_1121705913300020582SoilPPVTIQFDWAQTLPLALVVATLPVLVAATVIARRPDPAAELRTAEAA
Ga0210408_1097127023300021178SoilWSQTIPLALAVAVLPVLAAALTVARRPDAAAELRAAEAT
Ga0210396_1176516423300021180SoilAITLTSSATAPVPPVLIQFGWSQTLPLALAVAVLPVLAAALTVARRPDAAAELRAAESA
Ga0210393_1095867913300021401SoilTAPVPPVLIQFGWSQTLPLALAVAVLPVLAAALTIARRPDAAAQLRAAESA
Ga0210393_1110393323300021401SoilQFGWSQTLPLALAVAVLPVLAAALTVARRPDAAAELRAAESA
Ga0210397_1085946813300021403SoilQTLPLALAVAVLPVLAAALTIARRPDAAAQLRAAESA
Ga0210390_1029643613300021474SoilAPVPPVLIQFGWSQTLPLALAVAVLPVLAAALTIARRPDAAAQLRAAESA
Ga0187846_1019250813300021476BiofilmWVQTLPLALAVAALPVLVAAAVIVRRPDPAAELRTAEAA
Ga0210402_1128653713300021478SoilLIQFGWVQTLLLALAVAVLPVLAASLTLARRPDAAAQLRAAEAA
Ga0228598_112827523300024227RhizosphereDWAQTLPLALAVAALPVAVAAVVIARRPDPAAELRTAEAA
Ga0257162_104608223300026340SoilPVPPVLIQFGWSQTLPLALAVAVLPVLVAAFTIARRPDAAAELRAAEAT
Ga0209580_1041538923300027842Surface SoilGWSQTLPLALAVAVVPVLAAGLTITRRPDAAAALRAAEAA
Ga0209517_1001917013300027854Peatlands SoilPPVRIQFGWSQTLPLALAVAVLPVLAAALTIARRPDAAAELRASESA
Ga0209693_1004205713300027855SoilPVPPVLIQFSWSQTLPLALAIAVLPVLAAALTIARRPDAAAELRAAESA
Ga0209006_1118533413300027908Forest SoilPVLIQFNWAQTLPLALAIAVLPVLAAALTIARRPDAAAELRAAESA
Ga0302226_1013406613300028801PalsaATTPVPPVLIQFSWSQTLPLALAIAVLPVLAAALTIARRPDAAAELRAAESA
Ga0302229_1023744813300028879PalsaIQFSWAQTLPLALAIAVLPVLAAALTIARRPDAAAELRAAESA
Ga0311340_1023520723300029943PalsaLIQFSWSQTLPLALAIAVLPVLAAALTIARRPDAAAELRAAETA
Ga0311371_1149682023300029951PalsaLTPSATTPVPPVLIQFSWSQTLPLALAIAVLPVLAAALTIARRPDAAAELRAAETA
Ga0311355_1081846913300030580PalsaTTPVPPVLIQFNWSQTLPLALAIAVLPVLAAALTIARRPDAAAELRAAESA
Ga0302325_1200609123300031234PalsaVPPVLIEFSWSQTLPLALAVAILPVLAAALTVARRPDAAAQLRAAESA
Ga0302325_1274396623300031234PalsaLPLTVAVAVLPVLAAALTVARRPDAAAELRTAEAA
Ga0318574_1049579713300031680SoilPPVLIQLGWSQTLLLALAVAVLPVLAAALTIAWRPDAAAELRAAESA
Ga0318572_1026495613300031681SoilVIIQFDWAQTLPLALAVATLPVLAAAAVIARRPDPAAELRTAEAP
Ga0318572_1033968323300031681SoilVPAVTLTVTASTPVPPVIIQFDWAQTLPLALAVAVLPVLVAAVVIARRPDPATELRTAEA
Ga0310686_10027775623300031708SoilTLSPSATVPVPPVLIQFGWSQTLPLALAVAVVPVLAAALTITRRPDPAAALRAAEAA
Ga0307474_1161861113300031718Hardwood Forest SoilSQTLPLALAVAVIPVLAAALTITRRPDPAAALRAAEAA
Ga0318493_1013561323300031723SoilSATTPVPPVLIEFGWSQTLSLALAIAVLPVLAAALTIARRPDAAAGLRAAESL
Ga0306918_1150289123300031744SoilTTPVPPVLIQFGWAQILPLALAIAVLPVLAAALTVARRPDAAAELRTAEAT
Ga0318492_1001904613300031748SoilAPAATRPVPPVLIQFGWSQTLLLALAVAVLPVLAAELTIARRPDAAAELRAAESA
Ga0318492_1026536823300031748SoilPVPPVLIEFGWSQILPLALAVAVLPVLAAALTIARRPDAAAELRAAESA
Ga0318494_1022764613300031751SoilTSSATTPVPPVLIEFDWAQTLALALAIAVLPVLAAALTVARRPDAAAELRTAEAT
Ga0318521_1002717113300031770SoilSAPAATRPVPPVLIQFGWSQTLLLALAVAVLPVLAAELTIARRPDAAAELRAAESA
Ga0318543_1031292823300031777SoilAQTLPLALAVATLPVLAAAAVIARRPDPAAELRTAEAP
Ga0318498_1001435513300031778SoilTTAATRPVPPVLIQFGWSQTLLLALAVAVLPVLAAELTIARRPDAAAELRAAESA
Ga0318547_1003182123300031781SoilSPVPPVIIQFDWAQTLPLALAVATLPVLAAAAVIARRPDPAAELRTAEAP
Ga0318552_1006011313300031782SoilVPAVTLTATASSPVPPVIIQFDWAQTLPLALAVATLPVLAAAAVIARRPDPAAELRTAEA
Ga0318552_1060573513300031782SoilIIQFDWAQTLPLALAVAVLPVLVAAVVIARRPDPATELRTAARR
Ga0318523_1040595423300031798SoilPVLIQLAWSQTLPLALAVAVLPVLAAAFTIARRPDAAAELRAAESA
Ga0318568_1016991223300031819SoilVPPVIIQFDWAQTLPLALAVAVLPVLVAAVVIARRPDPATELRTAEAA
Ga0318567_1047573813300031821SoilDWAQTLPLALAVAVLPVLVAAVVIARRPDPATELRTAEAA
Ga0318564_1044540913300031831SoilTATASSPVPPVIIQFDWAQTLPLALAVATLPVLAAAAVIARRPDPAAELRTAEAP
Ga0318511_1007709313300031845SoilAQTLPLALAVAVLPVLVAAVVIARRPDPATELRTAEAA
Ga0318551_1054904713300031896SoilVTASTPVPPVIIQFDWAQTLPLALAVAVLPVLVAAVVIARRPDPATELRTAEAA
Ga0318520_1040045013300031897SoilLTSSATTPVPPVQIQFGWSQTLALALTVAVLPVLAAALTIMRRPDAAAELRAAEAA
Ga0306923_1222088323300031910SoilTASTPVPPVIIQFDWAQTLPLALAVAVLPVLVAAVVIARRPDPATELRTAEAA
Ga0308174_1012848013300031939SoilTLLLALAVAVLPVLASALTLARRPDAAAELRAAEAA
Ga0306926_1251744013300031954SoilVTLTVTASTPVPPVIIQFDWAQTLPLALAVAVLPVLVAAVVIARRPDPATELRTAEAA
Ga0306926_1279016123300031954SoilQLGWSQTLLLALAVAVLPVLAAALTIAWRPDAAAELRAAESA
Ga0318570_1051751623300032054SoilIQFDWAQTLPLALAVATLPVLAAAAVIARRPDPAAELRTAEAP
Ga0318510_1014580613300032064SoilASTPVPPVIIQFDWAQTLPLALAVATLPVLAAAAVIARRPDPAAELRTAEAP
Ga0318553_1000770443300032068SoilQALPLALAVAVLPVLAAALTIARRPDAAAELRAAESA
Ga0310890_1049322423300032075SoilAQMLLLALAVAVLPVLAASLTLARRPDAAAQLRAAEAA
Ga0311301_1085553223300032160Peatlands SoilTSSATTPVPPVRIQFGWSQTLPLALAVAVLPVLAAALTIARRPDAAAELRASESA
Ga0311301_1268748913300032160Peatlands SoilLLVPAITLTSSAAVPVPPVRVQFGWSQTLPLALAVAVLPVLAAALTIARRPDAAAELRASESA
Ga0307472_10259144523300032205Hardwood Forest SoilGWSQILPLALAVAVLPVLAAAFTIARRPDAAAELRAAESA
Ga0335078_1211969213300032805SoilLLGAAGLALAVTVIPVLAAALTVAHQPDPAARLRTPEDT
Ga0335071_1118474413300032897SoilIIQFDWAQTLPLALAVAVLPVLLAAAVIARRPDPAAELRTAEAA


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