NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F105511

Metagenome Family F105511

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F105511
Family Type Metagenome
Number of Sequences 100
Average Sequence Length 39 residues
Representative Sequence SAIKNMDASKFSKGVARIKENQDIKNNVLKIKDGEYKED
Number of Associated Samples 91
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 100.00 %
% of genes from short scaffolds (< 2000 bps) 85.00 %
Associated GOLD sequencing projects 85
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (54.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(23.000 % of family members)
Environment Ontology (ENVO) Unclassified
(70.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(82.000 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50
1DelMOSum2010_102409661
2SI39nov09_120mDRAFT_10309811
3JGI11705J14877_100682072
4JGI24003J15210_101767102
5Ga0066862_101493962
6Ga0066841_100600042
7Ga0075108_101952642
8Ga0066370_102608142
9Ga0075446_100555652
10Ga0068499_12476352
11Ga0098035_12335791
12Ga0098042_11412041
13Ga0098054_11772702
14Ga0070750_103766572
15Ga0098051_12100722
16Ga0098046_10338991
17Ga0102945_10242431
18Ga0105664_10367272
19Ga0099850_12709201
20Ga0075480_101283212
21Ga0102960_12515591
22Ga0102963_10819902
23Ga0114993_111343901
24Ga0115545_12074482
25Ga0115559_10603351
26Ga0115559_12713362
27Ga0115558_13844072
28Ga0115554_10529101
29Ga0115003_101656152
30Ga0115004_106617932
31Ga0114999_105706032
32Ga0098061_10320651
33Ga0129345_11305661
34Ga0114934_104586421
35Ga0160422_100433111
36Ga0160422_104464961
37Ga0163179_100142081
38Ga0163179_100836354
39Ga0163179_102445082
40Ga0163111_100516141
41Ga0181391_10421931
42Ga0181390_10180144
43Ga0181390_10999571
44Ga0181398_11090991
45Ga0187219_10348941
46Ga0181414_10093211
47Ga0181589_107525421
48Ga0181590_100368361
49Ga0181590_109706141
50Ga0181569_108775892
51Ga0180432_109694501
52Ga0181559_104927821
53Ga0181593_106245671
54Ga0181562_103201532
55Ga0206124_100825771
56Ga0211686_100938782
57Ga0211636_101807062
58Ga0211617_100469001
59Ga0211521_101102752
60Ga0211691_101583972
61Ga0211691_103798052
62Ga0211643_100872183
63Ga0211714_105938762
64Ga0211577_108938782
65Ga0222718_104731651
66Ga0222719_100738371
67Ga0222719_105721042
68Ga0187827_102544483
69Ga0222653_10139773
70Ga0255756_11843412
71Ga0255784_104934321
72Ga0255743_105210341
73Ga0255772_100369151
74Ga0222664_10375592
75Ga0228658_10280693
76Ga0209336_100983941
77Ga0208148_10766082
78Ga0208899_10960791
79Ga0208425_10525252
80Ga0209600_11088241
81Ga0208128_10115461
82Ga0209071_10399151
83Ga0209192_100134835
84Ga0209709_100358614
85Ga0209089_103495861
86Ga0209402_105628732
87Ga0233450_103420351
88Ga0257122_11299461
89Ga0257108_11481852
90Ga0257107_10581191
91Ga0257107_11114191
92Ga0308010_10119176
93Ga0307488_101058773
94Ga0308019_102442541
95Ga0302132_101899321
96Ga0302123_102935841
97Ga0302117_103925971
98Ga0315328_101771052
99Ga0310122_104425452
100Ga0310125_101180621
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 10.26%    β-sheet: 0.00%    Coil/Unstructured: 89.74%
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5101520253035SAIKNMDASKFSKGVARIKENQDIKNNVLKIKDGEYKEDSequenceα-helicesβ-strandsCoilSS Conf. score
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Gene Neighborhood

Neighboring Pfam domains




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Phylogeny

NCBI Taxonomy

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Visualization
All Organisms
Unclassified
80.0%20.0%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Marine
Seawater
Seawater
Marine
Marine
Surface Seawater
Seawater
Background Seawater
Marine
Aqueous
Seawater
Sackhole Brine
Freshwater To Marine Saline Gradient
Marine
Seawater
Salt Marsh
Marine
Marine
Estuarine Water
Pelagic Marine
Seawater
Marine
Seawater
Deep Subsurface
Saline Lake
Saline Water
Pond Water
Saline Water And Sediment
Hypersaline Lake Sediment
23.0%3.0%5.0%6.0%12.0%11.0%3.0%6.0%6.0%3.0%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
DelMOSum2010_1024096613300000101MarineKNMDASKFSKGVARIKENRDVKENVLKIKDGEYKED*
SI39nov09_120mDRAFT_103098113300000167MarineMDASKFSKGVARIKENRDVKENLLKIKDGDYKED*
JGI11705J14877_1006820723300001419Saline Water And SedimentNSALKNMDASKFSKGVARIKENRDIKQNVLKIRDGEYQED*
JGI24003J15210_1017671023300001460MarineFNSALKNMDASKFSKGVARIKENKDVKENVLKIKDGEYQED*
Ga0066862_1014939623300005521MarineHSSIKNMDAKKFARGVARIKENKDIKDNVLKIKDGEYKED*
Ga0066841_1006000423300005599MarineSIKNMDASKFSKGVARIKENKHIKDNVLKIKDGEYKED*
Ga0075108_1019526423300005913Saline LakeIKNMDASKFSRGVARIKENQDIKENVLKIKDGEYKED*
Ga0066370_1026081423300005971MarineKKFNSALKNMDASKFSKGVARIKENQDIKNNVLKIKDGEYKED*
Ga0075446_1005556523300006190MarineFNSAIKNMDASKFSKGVARIKENQDIKNNVLKIKDGEYKED*
Ga0068499_124763523300006327MarineIKNMDSNKFARGVARIKENKHIKDNVLKIKDGEYKED*
Ga0098035_123357913300006738MarineIKNMDASKFSKGVARIKENKHIKDNVLKIKEGEYKED*
Ga0098042_114120413300006749MarineNMDASKFTKGVARIKENRDVKENLLKIKDGEYKED*
Ga0098054_117727023300006789MarineFNSAIKNMDASKFSKGVARIKENKDIKDNILKIKDGEYKED*
Ga0070750_1037665723300006916AqueousALKNMDASKFSKGVARIKENRDVKENMLKIKDGEYKED*
Ga0098051_121007223300006924MarineKNMDASKFSKGVARIKENQDIKKNVLKIKDGEYKED*
Ga0098046_103389913300006990MarineNMDASRFSKGVARIKENRDVKENLLKIKDGEYKED*
Ga0102945_102424313300007609Pond WaterSAIKNMDASKFSKGVARIKENRDVKENLLKIRDGDYRED*
Ga0105664_103672723300007756Background SeawaterFHSSIKNMDSNKFARGVARIKENKHIKDNVLKIKDGDYKED*
Ga0099850_127092013300007960AqueousKKFNSALKNMDASKFSKGVARIKENRDIKENVLKIRDGEYQED*
Ga0075480_1012832123300008012AqueousAIKNMDASKFSKGVARIKENRDVKENLLKIKDGEYRED*
Ga0102960_125155913300009000Pond WaterKFNSAIKNMDASKFSRGVARIKENQDIKKNVLKIKDGEYRED*
Ga0102963_108199023300009001Pond WaterSALKNMDASKFSKGVARIKENRDIKENVLKIRDGEYQED*
Ga0114993_1113439013300009409MarineAIKNMDASKFSKGVARIKENQDIKNNVLKIKDGEYEED*
Ga0115545_120744823300009433Pelagic MarineALKNMDASKFSKGVARIKENRDVKQNLLKIKDGEYRED*
Ga0115559_106033513300009438Pelagic MarineEKKFNSALKNMDASKFSKGVARIKENRDVKENVLKIKDGEYKED*
Ga0115559_127133623300009438Pelagic MarineMDASKFSKGVARIKENQDIKANVLKIKDGEYKED*
Ga0115558_138440723300009449Pelagic MarineNSALKNMDASKFSKGVARIKENRDGKENVLKIKDGEYRED*
Ga0115554_105291013300009472Pelagic MarineSAIKNMDASKFSKGVARIKENRDVKENLLKIKDGEYKED*
Ga0115003_1016561523300009512MarineMDASKFSKGVARIKENQDIKNNVLKIKDGDYKED*
Ga0115004_1066179323300009526MarineFNSAIKNMDASKFSKGVARIKENQDIKKNVLKIKDGEYRED*
Ga0114999_1057060323300009786MarineFNSAIKNMDASKFSKGVARIKENQDIKNNVLKIKDGEYEED*
Ga0098061_103206513300010151MarineSAIKNMDASKFAKGVARIKENKDIKDNVLKIKDGDYKED*
Ga0129345_113056613300010297Freshwater To Marine Saline GradientKKFNSALKNMDASKFSKGVARIKENRDIKDNVLKTIDGEYQED*
Ga0114934_1045864213300011013Deep SubsurfaceMDASKFSKGVARIKENKDVKENVLKIKDGEYKDD*
Ga0160422_1004331113300012919SeawaterKNMDASKFTKGVARIKENKDIKNNVLKIKDGEYQEE*
Ga0160422_1044649613300012919SeawaterSAVKNMDASKFSKGVARIKENRDVKNNVLKIKDGEYKED*
Ga0163179_1001420813300012953SeawaterKFNSALKNMDASKFSKGVARIKENKDVKENVLKIKDGEYKED*
Ga0163179_1008363543300012953SeawaterNSAIKNMDASKFSKGVARIKENKDVKNNILKIKDGEYKED*
Ga0163179_1024450823300012953SeawaterAMDSKKFSKGVARIKEYKDIKENVLKTIDGEYKED*
Ga0163111_1005161413300012954Surface SeawaterNMDASKFSKGVARIKENKDVKNNVLKIKDGEYQED*
Ga0181391_104219313300017713SeawaterNMDASKFSKGVARIKENRDVKENVLKIKDGEYKED
Ga0181390_101801443300017719SeawaterFNSAIKNMDASKFSKGVARIKENKDVKENVLKIKDGEYKED
Ga0181390_109995713300017719SeawaterNSALKNMDASKFSKGVARIKENRDVKENVLKIKDGEYKED
Ga0181398_110909913300017725SeawaterKKFNSALKNMDASKFSKGVARIKENKDVKENVLKIKDGEYKED
Ga0187219_103489413300017751SeawaterNMDASKFSKGVARIKENQDIKKNVLKIKDGEYKED
Ga0181414_100932113300017759SeawaterNSAIKNMDASKFSKGVARIKENKDVKENVLKIKDGEYKED
Ga0181589_1075254213300017964Salt MarshALKNMDASKFSKGVARIKENRDIKQNVLKIRDGEYNED
Ga0181590_1003683613300017967Salt MarshEKKFNSALKNMDASKFSKGVARIKENRDIKQNVLKIRDGEYKED
Ga0181590_1097061413300017967Salt MarshEKKFNSALKNMDASKFSKGVARIKENRDIKQNVLKIRDGEYQED
Ga0181569_1087758923300017986Salt MarshSALKNMDASKFTKGVARLKENREIKQNVLKIKDGEYKED
Ga0180432_1096945013300017989Hypersaline Lake SedimentKKFNSALKNMDASKFSKGVARIKENKDIKQNVLKTIDGEYQED
Ga0181559_1049278213300018415Salt MarshKKFNSAIRNMDASKFSKSVARIKENKEVKNNLKTIDGEYKED
Ga0181593_1062456713300018423Salt MarshALKNMDASKFSKGVARIKENQDIKQNVLKIRDGEYQED
Ga0181562_1032015323300019459Salt MarshSALKNMDASKFSKGVARIKENRDIKNNVLKIKDGEYQED
Ga0206124_1008257713300020175SeawaterALKNMDASKFTKGVARIKENRDVKENVLKIKDGEYKED
Ga0211686_1009387823300020382MarineSAIKNMDASKFSKGVARIKENQDIKNNILKIKDGEYKED
Ga0211636_1018070623300020400MarineIKNMDASKFSKGVARIKENQDIKNNVLKIKDGEYKED
Ga0211617_1004690013300020401MarineSAIKNMDASKFSKGVARIKENRDVKENVLKIKDGEYKED
Ga0211521_1011027523300020428MarineKNMDASKFSKGVARIKENRDVKENVLKIKDGEYQED
Ga0211691_1015839723300020447MarineHSSIKNMDSNKFARGVARIKENKHIKDNVLKIKDGEYKED
Ga0211691_1037980523300020447MarineHSSIKNMDSNKFSKGVARIKENKDIKDNVLKIKDGEYKED
Ga0211643_1008721833300020457MarineALKNMDASKFSKGVARIKENKDVKNNVLKIKDGEYKED
Ga0211714_1059387623300020466MarineAIKNMDASKFSKGVNRIKENKDIKDNVLKIKDGEYKED
Ga0211577_1089387823300020469MarineLEKKFNSALKNMDASKFSKGVARIKENRDVKENVLKIKDGEYKED
Ga0222718_1047316513300021958Estuarine WaterSALKNMDASKFSKGVARIKENRDIKQNVLKTIDGEYQED
Ga0222719_1007383713300021964Estuarine WaterKKFNSALKNMDASKFSKGVARIKENRDIKQNVLKIKDGEYKED
Ga0222719_1057210423300021964Estuarine WaterEKKFNSALKNMDASKFSKGVARIKENKDIKQNVLKTVDGEYQED
Ga0187827_1025444833300022227SeawaterNMDASKFSKGVARIKENKHIKDNVLKIKDGEYKED
Ga0222653_101397733300022857Saline WaterAAIKNMDASKFSRGVARIKENQYIKKNVLKIKDGEYKED
Ga0255756_118434123300022905Salt MarshNMDASKFSKGVARIKENKDIKQNVLKIKDGEYKED
Ga0255784_1049343213300023108Salt MarshNSAIRNMDASKFSKSVARIKENKEVKNNLKTIDGEYKED
Ga0255743_1052103413300023110Salt MarshFNSALKNMDASKFSKGVARIKENKDIKQNVLKIKDGEYKED
Ga0255772_1003691513300023176Salt MarshLKNMDASKFSKGVARIKENKDIKQNVLKIRDGEYQED
Ga0222664_103755923300023296Saline WaterFNSAIKNMDASKFSRGVARIKENQDIKNNVLKIKDGEYRED
Ga0228658_102806933300024297SeawaterEKKFNSALKNMDASKFSKGVARIKENRDVKENVLKIKDGEYKED
Ga0209336_1009839413300025137MarineAIKNMDASKFSRGVARIKENQDIKNNVLKIKDGEYQED
Ga0208148_107660823300025508AqueousNSAIKNMDASKFSKGVARIKENRDVKENLLKIKDGEYKED
Ga0208899_109607913300025759AqueousLEKKFNSALKNMDASKFSKGVARIKENKDIKQNVLKIRDGEYQED
Ga0208425_105252523300025803AqueousKKFNSALKNMDASKFSKGVARIKENKDIKQNVLKIRDGEYQED
Ga0209600_110882413300025821Pelagic MarineIKNMDASKFSKGVARIKENRDVKENLLKIKDGEYKED
Ga0208128_101154613300026186MarineRFHSAIKNMDASKFSKGVARIKENKHIKDNVLKIKDGEYKED
Ga0209071_103991513300027686MarineAIKHMDASKFSKGVARIKENKDVKENVLKIKDGEYKED
Ga0209192_1001348353300027752MarineKFNSAIKNMDASKFSKGVARIKENQDIKNNVLKIKDGEYKED
Ga0209709_1003586143300027779MarineFNSAIKNMDASKFSKGVARIKENQDIKNNVLKIKDGEYKED
Ga0209089_1034958613300027838MarineAIKNMDASKFSKGVARIKENQDIKNNVLKIKDGEYEED
Ga0209402_1056287323300027847MarineSAIKNMDASKFSKGVARIKENQDIKNNVLKIKDGEYKED
Ga0233450_1034203513300028115Salt MarshEKKFNSALKNMDASKFSKGVARIRENRDVKENVLKIKDGEYKED
Ga0257122_112994613300028177MarineDTAFKLEKKFNSAIKNMDASKFSKGVARIKENRDVKENLLKIRDGDYRED
Ga0257108_114818523300028190MarineLEKRFHSSIKNMDAKKFSRGVARIKENKDIKDNILKIKDGEYKED
Ga0257107_105811913300028192MarineKNMDSNKFSKGVARIKENKDIKDNVLKIKDGEYKED
Ga0257107_111141913300028192MarineFHSSIKNMDSNKFSKGVARIKENKDIKDNVLKIKDGEYKED
Ga0308010_101191763300031510MarineKLEKRFNSAIKHMDASKFSKGVARIKENKDVKENVLKIKDGEYKED
Ga0307488_1010587733300031519Sackhole BrineKNMDASKFSRGVARIKENQDIKNNVLRIKDGEYKED
Ga0308019_1024425413300031598MarineSAIKHMDASKFSKGVARIKENKDVKENVLKIKDGEYKED
Ga0302132_1018993213300031605MarineNMDASKFSRGVARIKENQDIKDNVLKIKDGEYKED
Ga0302123_1029358413300031623MarineHSSIKNMDSNKFSKGVARIKENKDIKNNVLKIKDGEYKED
Ga0302117_1039259713300031639MarineNSAIKNMDASKFSRGVARIKENQDIKNNVLKIKDGEYRED
Ga0315328_1017710523300031757SeawaterKRFHSSIKNMDASKFSKGVARIKENKDIKNNVLKIKDGEYKED
Ga0310122_1044254523300031800MarineNMDGNKFTKGIARIKENKDVKDNVLKIKDGEYKED
Ga0310125_1011806213300031811MarineKRFHSSIKNMDSNKFARGVARIKENKHIKDNVLKIRDGEYKED


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