NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F105480

Metagenome / Metatranscriptome Family F105480

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F105480
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 42 residues
Representative Sequence HAIRGLGGTVLKTNVDLERAQLIQSTLAAPSAQTSKSDEK
Number of Associated Samples 85
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 15.00 %
% of genes from short scaffolds (< 2000 bps) 15.00 %
Associated GOLD sequencing projects 82
AlphaFold2 3D model prediction Yes
3D model pTM-score0.26

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (86.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(15.000 % of family members)
Environment Ontology (ENVO) Unclassified
(28.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(44.000 % of family members)



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Multiple Sequence Alignments

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Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62
1FACENCA_3926040
2F64_04085320
3JGI1027J12803_1063785332
4JGI1027J12803_1096471551
5JGI10216J12902_1115401581
6F14TB_1004209671
7Ga0070708_1004234481
8Ga0070695_1017251661
9Ga0066701_101339141
10Ga0066692_102812941
11Ga0066708_104097541
12Ga0066905_1010830152
13Ga0066905_1014238551
14Ga0068866_105960071
15Ga0066903_1014659674
16Ga0066903_1037201081
17Ga0066651_108042451
18Ga0075029_1003732832
19Ga0075427_100841641
20Ga0075427_101068022
21Ga0075021_107849291
22Ga0075428_1019719771
23Ga0075431_1013978923
24Ga0075433_104147843
25Ga0075433_107949382
26Ga0075425_1000761841
27Ga0075425_1031339302
28Ga0075424_1014658731
29Ga0075419_112609461
30Ga0114129_109725763
31Ga0114129_116114661
32Ga0075423_112724391
33Ga0105249_103921151
34Ga0105249_107190942
35Ga0116215_11633392
36Ga0126380_100604574
37Ga0126380_104401283
38Ga0126384_105178111
39Ga0126382_106414832
40Ga0127493_10417251
41Ga0134111_100533223
42Ga0134080_103153362
43Ga0126376_118610442
44Ga0126372_103844411
45Ga0126377_103876081
46Ga0126379_125411551
47Ga0134122_121017792
48Ga0134123_113075002
49Ga0137392_112791452
50Ga0137389_113942942
51Ga0137363_101774741
52Ga0137376_107516622
53Ga0137372_101728554
54Ga0137367_102108164
55Ga0137366_104730241
56Ga0137360_101698481
57Ga0137373_112133542
58Ga0137396_106705022
59Ga0137404_100090297
60Ga0137407_104628442
61Ga0137407_108978792
62Ga0137407_112596022
63Ga0126375_101377843
64Ga0126375_108028271
65Ga0163162_112212221
66Ga0134081_100607252
67Ga0137418_111632951
68Ga0180093_10645581
69Ga0132255_1055262202
70Ga0132255_1057816172
71Ga0182039_107202971
72Ga0134112_101648241
73Ga0134112_102258142
74Ga0134083_103777182
75Ga0187778_101619161
76Ga0184638_12278151
77Ga0190269_107258541
78Ga0213877_102445352
79Ga0207644_108478482
80Ga0209055_10129396
81Ga0209684_10016112
82Ga0209481_102456762
83Ga0209068_106083432
84Ga0247827_108459301
85Ga0307497_104407902
86Ga0318516_100413861
87Ga0318515_101666712
88Ga0318574_103445051
89Ga0307469_122791382
90Ga0306923_108490011
91Ga0306926_104616292
92Ga0318532_102311271
93Ga0311301_105163353
94Ga0311301_118205203
95Ga0307470_110362612
96Ga0307471_1015115471
97Ga0306920_1032464262
98Ga0335079_115696541
99Ga0247830_111436452
100Ga0364943_0044770_845_982
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 16.18%    β-sheet: 0.00%    Coil/Unstructured: 83.82%
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510152025303540HAIRGLGGTVLKTNVDLERAQLIQSTLAAPSAQTSKSDEKSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.26
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
14.0%86.0%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Soil
Groundwater Sediment
Watersheds
Soil
Soil
Vadose Zone Soil
Terrestrial Soil
Tropical Forest Soil
Bulk Soil
Grasslands Soil
Peatlands Soil
Soil
Grass Soil
Soil
Soil
Hardwood Forest Soil
Soil
Soil
Tropical Peatland
Soil
Tropical Forest Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Sediment
Arabidopsis Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Populus Rhizosphere
Switchgrass Rhizosphere
Switchgrass Rhizosphere
3.0%15.0%10.0%7.0%3.0%8.0%4.0%4.0%3.0%5.0%14.0%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
FACENCA_39260402035918004SoilAILRAIRGLGGTVLKSNVDAERARLIQSTLAAASAPPHKPGS
F64_040853202170459011Grass SoilEMILQTLRGLGGTVLKTNVDVDRAKLIQSTLAAVDTVKPGDK
JGI1027J12803_10637853323300000955SoilQGLGGTVLRTNVDVKRAKLIQSTLAAAAADTSKPDDQ*
JGI1027J12803_10964715513300000955SoilHAIRGLGGTVLKTNVDLERAQLIQSTLAAPSAQTSKSDEK*
JGI10216J12902_11154015813300000956SoilGDMDVILHKIRGLGGTVLKTNVDVEHARLIQSTLAAPSTQPGKSDAK*
F14TB_10042096713300001431SoilGDMDVILHGIRGLGGTVLKTNVDMERARLIQSTLATPSAQPSKGEGG*
Ga0070708_10042344813300005445Corn, Switchgrass And Miscanthus RhizosphereTIRGLGGTVLKTNVDLERAQLIQSVLAAPSAQPSRPGGQ*
Ga0070695_10172516613300005545Corn, Switchgrass And Miscanthus RhizosphereGDMDVILHKIRGLGGTVLKTNVDVEHAKVIQSTLAAPSAQTNKSDDK*
Ga0066701_1013391413300005552SoilVILHGIRGLGGTVLKTNVDVERARLIQSTLAAPSEHATKADAE*
Ga0066692_1028129413300005555SoilQGDMDVILHGIRGLGGTVLKTNVDVERARLIQSTLAAPSEHAPKADADSLPRS*
Ga0066708_1040975413300005576SoilIRGLGGTVLKTNVDVERARLIQSTLAAPSEHATKADAE*
Ga0066905_10108301523300005713Tropical Forest SoilDMDVILHAIRGLGGTVLKSNVDTQRAQLIQTTLAAPSAQKHKSDDK*
Ga0066905_10142385513300005713Tropical Forest SoilGLGGIVLKSNVDRERAQLIQATLAAPSAQTSRSEEK*
Ga0068866_1059600713300005718Miscanthus RhizosphereILHAIRGLGGTVLKTNVDLERAQLIQSTLAAPSQTSKSDDKS*
Ga0066903_10146596743300005764Tropical Forest SoilMDVILHAIRGLRGTVLKTNVDLERAQLIQSTLAAPSAQPGKSDAK*
Ga0066903_10372010813300005764Tropical Forest SoilPHSPARRSAPSMDVRLHKIRGLGGTVLKTNVDLERAQLIQSALAAPPTQPGKSDAK*
Ga0066651_1080424513300006031SoilRGLGGTVLKTNVDLERARLIQSTLAAPSAQTSKPDVK*
Ga0075029_10037328323300006052WatershedsMDAILHAIRGLGGTVLKSNVDLERVKLIQATLAASAGTTQSNDL*
Ga0075427_1008416413300006194Populus RhizosphereIQGLGGTVLRTNVDVKRAKLIQSTLAAAAADTSKPDGQ*
Ga0075427_1010680223300006194Populus RhizosphereGGTVLKTNVDLERAQLIQSTLAAPSAQTNKSDDK*
Ga0075021_1078492913300006354WatershedsLGGTVLKTNVDLERAKLIQSTLAAASTDTSKPNGE*
Ga0075428_10197197713300006844Populus RhizosphereRGLGGTVLKTNVDVEHAKLIQSTLAAPSAQTNKSDDK*
Ga0075431_10139789233300006847Populus RhizosphereIRGLGGMVLKTNVDLERAQLIQSTLAAPSAQTNKSDDK*
Ga0075433_1041478433300006852Populus RhizosphereDMDVILHGIRGLGGTVLKTNVDLERARLIQSTLAVSVAQTTRPATD*
Ga0075433_1079493823300006852Populus RhizosphereLGGTVLKTNVDVERARLIQSTLAEGSAPTNKPDGR*
Ga0075425_10007618413300006854Populus RhizosphereMDVILHKIRGLGGTVLKTNVDLERTKLIQSTLAAASTDPSKPDGQ*
Ga0075425_10313393023300006854Populus RhizosphereLHKIRGLGGTVLKTNVDVEHAKLIQSTLAAPSAQTNKSDDK*
Ga0075424_10146587313300006904Populus RhizosphereRGLGGTVLKTNVDMERAQLIQSTLTATSAQTRKSDDKE*
Ga0075419_1126094613300006969Populus RhizosphereIRGLGGTVLKTNVDRERAQLIQSTLAAPSAQTSKSDGK*
Ga0114129_1097257633300009147Populus RhizosphereIQGLGGTVLRTNVDLQRAQLIQSTLAAASADTSKPENEP*
Ga0114129_1161146613300009147Populus RhizosphereLHAIRGLGGTVLKTNVDVERAQLIQSTLSATSADRSKLDDKL*
Ga0075423_1127243913300009162Populus RhizosphereIRGLGGTVLKTNVDVEHAKLIQSTLAAPSAQTNKSDDK*
Ga0105249_1039211513300009553Switchgrass RhizosphereIRGLGGTVLKTNVDLERVQLIQSTLAAPSQTSKSDDKS*
Ga0105249_1071909423300009553Switchgrass RhizosphereHGIRGLGGTVLKTNVDVERARLIQSTLAAPSAQTNKVDGA*
Ga0116215_116333923300009672Peatlands SoilMDAILHAIRGLGGTVLKSNNVDLERVKLIQATLAASAGTTQSNDL*
Ga0126380_1006045743300010043Tropical Forest SoilQGLGGTVLRTNVDVKRAQLIQSTLAAAAADTSKPE*
Ga0126380_1044012833300010043Tropical Forest SoilLGGTVLRTNVDVKRAQLIQSTLAAAAADTSKPDDQ*
Ga0126384_1051781113300010046Tropical Forest SoilMEVILHAIQGLGGTVLRTNVDLERAKLIQSTLAAASAQTGKSDDK*
Ga0126382_1064148323300010047Tropical Forest SoilLGGTVLKTNVDMERAKLIQSTLAAAPAATMKPAKQ*
Ga0127493_104172513300010130Grasslands SoilHGIRGLGGTVLKTNVDVERARLIQSTLAAAPSASSPS*
Ga0134111_1005332233300010329Grasslands SoilEGDMDVILHTIRGLGGTVLKTNVDLERARLIQSTLAAPSAQTSKPDVK*
Ga0134080_1031533623300010333Grasslands SoilRIRSLGGTVLKTNVDLGRARLIQSILAAFSAQTSKPDVK*
Ga0126376_1186104423300010359Tropical Forest SoilILHALQGLGGTVLRTNVDVQRAQLIQSTLAAAAADTNKPDGQ*
Ga0126372_1038444113300010360Tropical Forest SoilVILGAIRGLGGTVLKTNVDMERARLIQSTLAAPSTSKSDDK*
Ga0126377_1038760813300010362Tropical Forest SoilDDAGDMDVILHAIRGLGGTVLKSNVDTQRAQLIQTTLAAPSAQKHKSDDK*
Ga0126379_1254115513300010366Tropical Forest SoilVILHRIRGLGGTVLKTNVDLERAQLIQSTLAAPATRTSKSDDK*
Ga0134122_1210177923300010400Terrestrial SoilEGDMDVILHRIRGLGGTVLKTNVDMERARLIQSTLAASSVQTSKPGGD*
Ga0134123_1130750023300010403Terrestrial SoilGGSVLKTNVDVEHAKLIQSTLAAPSAQTNKSDEK*
Ga0137392_1127914523300011269Vadose Zone SoilDVILHRIRGLGGTVLKTNVDLERAQLIQSTLAVPSAQMDKSDDKS*
Ga0137389_1139429423300012096Vadose Zone SoilMDVILHKIQGLGGTVLKTNVDLERAKLIQATLAASSDQTLRPNGK*
Ga0137363_1017747413300012202Vadose Zone SoilEGDMDVILGAIRGLGGTVLKTNVDLERAQLIQSTLAAPSAQTIKSDGK*
Ga0137376_1075166223300012208Vadose Zone SoilDVILLTIRGLGGTVLKTNVDLEQAQLIQSTLAAPSAQTSKSDDK*
Ga0137372_1017285543300012350Vadose Zone SoilRGLGGTVLKTNVDLEHAQLIQSTLAAPPAQTSKSDDK*
Ga0137367_1021081643300012353Vadose Zone SoilGGTVLKTNVDLERAQLIQSTLAAPSAQTSKPDDK*
Ga0137366_1047302413300012354Vadose Zone SoilRGLGGTVLKTNVDVEHAKLIQSTLAAPSAQTSESEDK*
Ga0137360_1016984813300012361Vadose Zone SoilGLGGTVLKTNVDLERAQLIQSTLAAASAQTSKSAEK*
Ga0137373_1121335423300012532Vadose Zone SoilLHAIRGLGGTVLKTNVDLERARLIQSTLAASSAQTNKSESK*
Ga0137396_1067050223300012918Vadose Zone SoilEVILHAIRGLGGTVLRTNVDLERAKLIQSTLAAAAAATSKPDGQ*
Ga0137404_1000902973300012929Vadose Zone SoilMDMILHGIRGLGGTVLKTNVDVERARLIQSTLAAPSAQTNKVDCE*
Ga0137407_1046284423300012930Vadose Zone SoilILHKIRGLGGTVLKTNVDRERAQLIQSTLAAPSAQTSKSDGK*
Ga0137407_1089787923300012930Vadose Zone SoilILHKIRGLGGTVLKTNVDRERAQLIQSTLAAPSAQTSKSDEK*
Ga0137407_1125960223300012930Vadose Zone SoilVILHKIRGLGGTVLKTNVDREHAQLIQSTLAAPSTQPGKSDAK*
Ga0126375_1013778433300012948Tropical Forest SoilGDMDVILSRIRGLGGTLLKTNVDVERARLIQSTLASPPAQRGKAEGG*
Ga0126375_1080282713300012948Tropical Forest SoilHKIRGLGGTVLKTNVDLEHARLIQSTLAAPAAQTSKSDDK*
Ga0163162_1122122213300013306Switchgrass RhizosphereGDMDVILHKIRGLGGSVLKTNVDVEHAKLIQSTLAAPSAQTNKSDDK*
Ga0134081_1006072523300014150Grasslands SoilMDVILHRIRGLGGTVLKTNVDLERARLIQSTLAAPSAQTSKPDVK*
Ga0137418_1116329513300015241Vadose Zone SoilIRGLGGTVLKTNVDLERAQLIQSTLAVPSAQTSKSDGK*
Ga0180093_106455813300015258SoilLGGTVLKTNVDRERAQLIQSTLAAPSTQPGKSDAK*
Ga0132255_10552622023300015374Arabidopsis RhizosphereDVILHKIRGLGGSVLKTNVDVEHAKLIQSTLAAPSAQTNKSDDK*
Ga0132255_10578161723300015374Arabidopsis RhizosphereILHKIRGLGGSVLKTNVDVEHAKLIQSTLAAPSAQTNKSDDK*
Ga0182039_1072029713300016422SoilPGDMDVILHKIRGLGGTVLKTNVDLERAQLIQSTLAAPSTQPGKSDAK
Ga0134112_1016482413300017656Grasslands SoilILHTIRGLGGTVLKTNVDLERAQLIQSTLAAPSAQPSRPGGQ
Ga0134112_1022581423300017656Grasslands SoilRGLGGTVLKTNVDLERARLIQSTLAASSAQTNKSESK
Ga0134083_1037771823300017659Grasslands SoilRGLGGTVLKTNVDLERARLIQSTLAAPSAQTSKPDVK
Ga0187778_1016191613300017961Tropical PeatlandILHAIRGLGGTVLKSNNVDLERVKLIQATLAASAGTTQSNDL
Ga0184638_122781513300018052Groundwater SedimentHAIRGLGGTVLKTNVDLEHAQLIQSTLAAPSAQTSKSDDK
Ga0190269_1072585413300018465SoilLHAIQGLGGTVLRTNVDLQRAKLIQSTLAAALADTSKPDGQ
Ga0213877_1024453523300021372Bulk SoilAILHAIRGLGGTVLKTNVDPERARLIQSTLAASADTTQPNGQ
Ga0207644_1084784823300025931Switchgrass RhizosphereIRGLGGTVLKTNVDLERAQLIQSTLAAPSTQIDKSDDKA
Ga0209055_101293963300026309SoilIRGLGGTVLKTNVDVERARLIQSTLAAPSERATKADAE
Ga0209684_100161123300027527Tropical Forest SoilMDVILHAIRGLRGTVLKTNVDLERAQLIQSTLAAPSAQPGKSDAK
Ga0209481_1024567623300027880Populus RhizosphereDEGDMDVILHRIRGLGGTVLKTNVDLERAQLIQSTLAAPSAQPSKSDSK
Ga0209068_1060834323300027894WatershedsIRGLGGTVLKTNVDLERAKLIQSTLAAASTDTSKPNGE
Ga0247827_1084593013300028889SoilIQGLGGTVLRTNVDLERAQLIQSTLAAAAAGTSKPDGQ
Ga0307497_1044079023300031226SoilGLGGTVLKTNVDLERAQLIQSTLAAPSAQTSKSDEK
Ga0318516_1004138613300031543SoilMDVILYRIRGLGGTVLKTNVDLERAQLIQSTLSAAPEQSSKPDGE
Ga0318515_1016667123300031572SoilVILYRIRGLGGTVLKTNVDLERAQLIQSTLSAAPEQSSKPDGE
Ga0318574_1034450513300031680SoilMDVILYRIRGLGGTVLKTNVDLERAQLIQSTLSAAPEQSSKPDDE
Ga0307469_1227913823300031720Hardwood Forest SoilEGDMDVILHAIRGLGGTVLKTNVDVDRARVIQSTLAAPSAQTSRADGE
Ga0306923_1084900113300031910SoilILHKIRGLGGTVLKTNVDLERAQLIQSTLAAPSTQPGKSDAK
Ga0306926_1046162923300031954SoilMDVILYRIRGLGGTVLKTNVDLERARLIQSTLAASAATTQPNGQ
Ga0318532_1023112713300032051SoilLGGTVLKTNVDLERAQLIQSTLSAAPEQSSKPDGE
Ga0311301_1051633533300032160Peatlands SoilMDAILHAIRGLGGTVLKSNNVDLERVKLIQATLAASAGTTQSNDL
Ga0311301_1182052033300032160Peatlands SoilMEVILHTIQGLGGTVIKTNVDLERARLIESTLAGAPAEVATSSRTGQ
Ga0307470_1103626123300032174Hardwood Forest SoilIRGLGGTVLKTNVDLERAQLIQSTLAAPSAQTSKSDVK
Ga0307471_10151154713300032180Hardwood Forest SoilIRGLGGTVLKTNVDVERARLIQSTLAEQSAPTSKPDCN
Ga0306920_10324642623300032261SoilEDVILHALRGLGGTVLRTNVDLERARLIQSTLAAPADTTQPGES
Ga0335079_1156965413300032783SoilLGAIRGLGGTVLKTNVDLERAQLIQSTLAAPSAQTSKSDVK
Ga0247830_1114364523300033551SoilIQGLGGTVLRTNVDLERVQLIQSTLAAAAAGTSKPDGQ
Ga0364943_0044770_845_9823300034354SedimentMDVILHKIRGLGGTVLKTNVDREHAQLIQSTLAAPSTQPGKSDAK


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