NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F105448

Metagenome Family F105448

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F105448
Family Type Metagenome
Number of Sequences 100
Average Sequence Length 83 residues
Representative Sequence MDIGIASVVMLPGYAPYPRYGRLLKQLDGGRVLVGQVQCGDPRCAAEHHHSDVVWSPEDLQAAVAYQPRAPWEHGRKSSPNTPVD
Number of Associated Samples 74
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 0.00 %
% of genes from short scaffolds (< 2000 bps) 0.00 %
Associated GOLD sequencing projects 68
AlphaFold2 3D model prediction Yes
3D model pTM-score0.69

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (100.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil
(32.000 % of family members)
Environment Ontology (ENVO) Unclassified
(38.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Unclassified
(44.000 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 15.93%    β-sheet: 20.35%    Coil/Unstructured: 63.72%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.69
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF00128Alpha-amylase 27.00
PF12838Fer4_7 5.00
PF00731AIRC 3.00
PF01058Oxidored_q6 3.00
PF11583AurF 3.00
PF02769AIRS_C 3.00
PF13237Fer4_10 2.00
PF08545ACP_syn_III 2.00
PF02775TPP_enzyme_C 2.00
PF13458Peripla_BP_6 2.00
PF00015MCPsignal 1.00
PF00089Trypsin 1.00
PF13193AMP-binding_C 1.00
PF00884Sulfatase 1.00
PF02518HATPase_c 1.00
PF00037Fer4 1.00
PF00296Bac_luciferase 1.00
PF08448PAS_4 1.00
PF14376Haem_bd 1.00
PF10049DUF2283 1.00
PF00248Aldo_ket_red 1.00
PF09609Cas_GSU0054 1.00
PF03446NAD_binding_2 1.00
PF00005ABC_tran 1.00
PF10094DUF2332 1.00
PF01556DnaJ_C 1.00
PF01966HD 1.00
PF08811DUF1800 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG02961,4-alpha-glucan branching enzymeCarbohydrate transport and metabolism [G] 27.00
COG0366Glycosidase/amylase (phosphorylase)Carbohydrate transport and metabolism [G] 27.00
COG1523Pullulanase/glycogen debranching enzymeCarbohydrate transport and metabolism [G] 27.00
COG3280Maltooligosyltrehalose synthaseCarbohydrate transport and metabolism [G] 27.00
COG0377NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductaseEnergy production and conversion [C] 3.00
COG1740Ni,Fe-hydrogenase I small subunitEnergy production and conversion [C] 3.00
COG1941Coenzyme F420-reducing hydrogenase, gamma subunitEnergy production and conversion [C] 3.00
COG3260Ni,Fe-hydrogenase III small subunitEnergy production and conversion [C] 3.00
COG0840Methyl-accepting chemotaxis protein (MCP)Signal transduction mechanisms [T] 2.00
COG0484DnaJ-class molecular chaperone with C-terminal Zn finger domainPosttranslational modification, protein turnover, chaperones [O] 1.00
COG2141Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)Coenzyme transport and metabolism [H] 1.00
COG5267Uncharacterized conserved protein, DUF1800 familyFunction unknown [S] 1.00


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

NameRankTaxonomyDistribution
UnclassifiedrootN/A100.00 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil32.00%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands9.00%
Freshwater WetlandsEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands7.00%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil6.00%
RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere6.00%
Freshwater Lake SedimentEnvironmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment3.00%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland3.00%
Freshwater WetlandsEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands2.00%
Hot Spring SedimentEnvironmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment2.00%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil2.00%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil2.00%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere2.00%
Bio-OozeEnvironmental → Terrestrial → Cave → Unclassified → Unclassified → Bio-Ooze2.00%
Down-Flow Hanging Sponge ReactorEngineered → Bioreactor → Unclassified → Unclassified → Unclassified → Down-Flow Hanging Sponge Reactor2.00%
WetlandEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland1.00%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment1.00%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment1.00%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment1.00%
GroundwaterEnvironmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater1.00%
SinkholeEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Sinkhole1.00%
Salt Marsh SedimentEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh Sediment1.00%
Mangrove SedimentEnvironmental → Aquatic → Marine → Wetlands → Sediment → Mangrove Sediment1.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.00%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil1.00%
Glacier Forefield SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil1.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil1.00%
Untreated Peat SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil1.00%
Natural And Restored WetlandsEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands1.00%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil1.00%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil1.00%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.00%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere1.00%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere1.00%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.00%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300003278Down-flow hanging sponge reactor microbial communities from the University of Illinois at Urbana-Champaign, USA - U2-648F-DHSEngineeredOpen in IMG/M
3300003310Down-flow hanging sponge reactor microbial communities from the University of Illinois at Urbana-Champaign, USA - L1-648F-DHSEngineeredOpen in IMG/M
3300003995Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleA_D2EnvironmentalOpen in IMG/M
3300004000Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_CattailNLB_D2EnvironmentalOpen in IMG/M
3300004004Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Galinas_PWB_D2EnvironmentalOpen in IMG/M
3300004007Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_CordC_D2EnvironmentalOpen in IMG/M
3300004009Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D2EnvironmentalOpen in IMG/M
3300004020Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleC_D2EnvironmentalOpen in IMG/M
3300004067Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_ThreeSqA_D2EnvironmentalOpen in IMG/M
3300004114Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5EnvironmentalOpen in IMG/M
3300004463Combined assembly of Arabidopsis thaliana microbial communitiesHost-AssociatedOpen in IMG/M
3300005077Water filled karst sinkhole microbial communities from Little Salt Spring, North Port, Florida - Phototrophic mat 2014EnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005406Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaGEnvironmentalOpen in IMG/M
3300006224Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 4 metaGEnvironmentalOpen in IMG/M
3300006865Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaGEnvironmentalOpen in IMG/M
3300009091Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300009100Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2Host-AssociatedOpen in IMG/M
3300009111Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1EnvironmentalOpen in IMG/M
3300009167Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)EnvironmentalOpen in IMG/M
3300009506Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_8EnvironmentalOpen in IMG/M
3300009700Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaGEnvironmentalOpen in IMG/M
3300009792Tropical forest soil microbial communities from Panama - MetaG Plot_12EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300010379Sb_50d combined assemblyEnvironmentalOpen in IMG/M
3300010391Freshwater sediment microbial communities from Lake Superior, USA - Station SU-17. Combined Assembly of Gp0155404, Gp0155335, Gp0155336, Gp0155336, Gp0155403, Gp0155406EnvironmentalOpen in IMG/M
3300010401Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1EnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012931Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaGEnvironmentalOpen in IMG/M
3300013297Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaGHost-AssociatedOpen in IMG/M
3300014297Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_CattailNLC_D1EnvironmentalOpen in IMG/M
3300015164Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-4b, rock/ice/stream interface)EnvironmentalOpen in IMG/M
3300017930Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5EnvironmentalOpen in IMG/M
3300018058Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MGEnvironmentalOpen in IMG/M
3300018064Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MGEnvironmentalOpen in IMG/M
3300019458Bio-ooze microbial communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-3 metaGEnvironmentalOpen in IMG/M
3300024056Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (PacBio error correction)EnvironmentalOpen in IMG/M
3300025310Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025538Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleC_D2 (SPAdes)EnvironmentalOpen in IMG/M
3300025615Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Galinas_PWB_D2 (SPAdes)EnvironmentalOpen in IMG/M
3300026075Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026557Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungalEnvironmentalOpen in IMG/M
3300027645Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027819Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW37 contaminated, 5.8 m (SPAdes)EnvironmentalOpen in IMG/M
3300027899Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL (SPAdes)EnvironmentalOpen in IMG/M
3300027900Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - BRP12 BR (SPAdes)EnvironmentalOpen in IMG/M
3300027902Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - CRP12 CR (SPAdes)EnvironmentalOpen in IMG/M
3300027905Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)EnvironmentalOpen in IMG/M
3300028380Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300030606Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT145D125EnvironmentalOpen in IMG/M
3300031235Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaGHost-AssociatedOpen in IMG/M
3300031240Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaGHost-AssociatedOpen in IMG/M
3300031242Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaGHost-AssociatedOpen in IMG/M
3300031247Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaGHost-AssociatedOpen in IMG/M
3300031595Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaGHost-AssociatedOpen in IMG/M
3300032061Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-10EnvironmentalOpen in IMG/M
3300032160Sb_50d combined assembly (MetaSPAdes)EnvironmentalOpen in IMG/M
3300032342Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G10_0EnvironmentalOpen in IMG/M
3300032770Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5EnvironmentalOpen in IMG/M
3300032782Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1EnvironmentalOpen in IMG/M
3300032783Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3EnvironmentalOpen in IMG/M
3300032829Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3EnvironmentalOpen in IMG/M
3300032893Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1EnvironmentalOpen in IMG/M
3300033004Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4EnvironmentalOpen in IMG/M
3300033408Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day20_noCTEnvironmentalOpen in IMG/M
3300033413Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_noCTEnvironmentalOpen in IMG/M
3300033414Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D4_BEnvironmentalOpen in IMG/M
3300033416Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D5_CEnvironmentalOpen in IMG/M
3300033419Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day5_noCTEnvironmentalOpen in IMG/M
3300033434Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_CT_bEnvironmentalOpen in IMG/M
3300033480Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D5_BEnvironmentalOpen in IMG/M
3300033482Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D1_CEnvironmentalOpen in IMG/M
3300033557Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D2_BEnvironmentalOpen in IMG/M
3300034155Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_05D_17EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
U2draft_100307983300003278Down-Flow Hanging Sponge ReactorMAIRIGATVMLPGYAPYPRYGTVDKIQDDGGVLVRNVQCGDPRCAAEHVHGDVTWSSHELEAANAYQPRAAWESGRKSSPNAPVG*
D1draft_100111623300003310Down-Flow Hanging Sponge ReactorMAITIDATVMLPGYAPYPRYGRVVKLVDDAHVQVIAVQCGDPRCAAEHMHGDGVWACADLEAANAYQPRAGWESGRKSSPNTPIDA*
Ga0055438_1002209333300003995Natural And Restored WetlandsMEIRRNEIVMLPGYAPYPRFGRAAHIEADGRVLVTEVQCGDPRCAAEHHHGDQVWRLDQLEAARAYQPRAGWEEGRKSSPNAMLS*
Ga0055458_1014994313300004000Natural And Restored WetlandsMPLEIGEVVMLPGYAPYPRYGRVTTRETDGRVRVGSVQCGDPRCAAEHQHADQVWTATELLAAQAYQPRAQWEEGRKSSPNAPVG*
Ga0055451_1010605423300004004Natural And Restored WetlandsMALEIGEVVMLPGYAPYPRYGRVTAREADGCVRVGGVQCGDPRCAAEHRHADQAWPASELLAAQAYQPRAQWEEGRKSSPNAPVD*
Ga0055476_1001766923300004007Natural And Restored WetlandsMPLTPDQIVMLPGYAPYPRYGRIAETVEADRVRVTAVQCGDPRCAAEHHHADQVWSTAELEAAAAYQPRAPWEHGRRSSPNAVVA*
Ga0055437_1014031823300004009Natural And Restored WetlandsMKVEIDATVMLPGYAPYPRYGRVAKFVDDDHALITNVLCGDPRCAAEHVHNDVVWNVADVEAVRAYQPRAGWELGRKSSPNALVD*
Ga0055440_1011946513300004020Natural And Restored WetlandsLGGDGLATGGMEIRRNEIVMLPGYAPYPRFGRAAHIEADGRVLVTEVQCGDPRCAAEHHHGDQVWRLDQLEAARAYQPRAGWEEGRKSSPNAMLS*
Ga0055485_1021750713300004067Natural And Restored WetlandsMSLRETQIVTLPGYAPYPRYGRIASILDSGEVRVTHVHCGDPRCAAEHHHADQLWSAVDLEAAAAYQPRAPWEHGRKSSPNAPVS*
Ga0062593_10051932623300004114SoilMPMSLSPNQLVMLPGYQPYPRYGRVAEILEDGAVRVSGVHCGDPRCASEHHHGDQVWPADQIEAVAAYQPRAPWEHGRKSSPNATVG*
Ga0063356_10145396613300004463Arabidopsis Thaliana RhizosphereMHFSIDDAVMLPGLHPYPRYGRIAAVEEDGQVRVTHVHCGDPRCAAEHRHGDERWSPTELLAARAYQPRAEWEHGRKSSPNAPIE*
Ga0071116_1000131243300005077SinkholeMQVVIGDLVMHPGYQPYPRYGRVVEQLDPAQVRVTAVQCGDPRCAAEHAHGDLVWRTDDLVATAAYQARADWEEGRKSSPNAVIEG*
Ga0066388_10511658013300005332Tropical Forest SoilYHPYPRYGRVAQLEEGDRVRVTGVHCGDPRCATEHHHGDMVWSIAELEGVRAYQARADWEEGRLSSPNAVIET*
Ga0070703_1029046323300005406Corn, Switchgrass And Miscanthus RhizosphereMHFSVDDVVMLPGLHPYPRYGRIAAVEEDGQVRVTHVHCGDPRCAAEHRHGEERWAPNDLLAARAYQPRAEWEHGRKSSPNAPIE*
Ga0079037_10007530923300006224Freshwater WetlandsMDIGIGSVVMLPGYAPYPRFGRLLAHLDGGRVLVGQVQCGDPRCAAEHHHGDVVWSPEDLRAAVAYQPRAPWEHGRKSSPNTPLD*
Ga0079037_10010163423300006224Freshwater WetlandsMDIGIASVVMLPGYAPYPRYGRLLKQLDGGRVLVGQVQCGDPRCAAEHHHSDVVWSPEDLQAAVAYQPRAPWEHGRKSSPNTPVD*
Ga0073934_1003431523300006865Hot Spring SedimentMLIRIGDIVMLPGYAPYPRYGRVAETQDDERLRVTQVQCGDPRCAAEHHHGDVVWNAADVVAVRAYQPRADWEEGRKSSPNVSLS*
Ga0102851_1124376023300009091Freshwater WetlandsYAPYPRYGRLLEQVDGGRVLVGHVQCGDPRCAAEHHHSDVVWSPEELQAAGAYQPRAPWEHGRKSSPNTPLG*
Ga0102851_1336052813300009091Freshwater WetlandsMDIGIASVVMLPGYAPYPRYGRLLKQLDGGRVLVGQVQCGDPRCAAEHHHSDVVWSPEDLQAAVAYQPRAPWEHGRKS
Ga0075418_1094006013300009100Populus RhizosphereMPMSLSPNQLVMLPGYQPYPRYGRIAEVLDTGQVRVTGVHCGDPRCASEHQHGDQVWAVDQVEAVAAYQPRAPWEHGRKSSPNAT
Ga0115026_1001753043300009111WetlandMDIGIASVVMLPGYAPYPRYGRLLKQLDGGRVLVGQVQCGDPRCAAEHHHSDVVWSPEDLQAAVAYQPRAPWEHGRKSSPNTPVA*
Ga0113563_1261329913300009167Freshwater WetlandsGSVVMLPGYAPYPRYGRLLEHLDGGRVRVGQVQCGDPRCAAEHRHGDVVWSPEDLRAAVAYQPRAPWEHGRKSSPNTPLD*
Ga0113563_1285663623300009167Freshwater WetlandsMSVALDMLVMLPGYLPYPRYGRVAKLLDEKSVLISQVHCGDPRCAAEHAHGDGVWPADALEAVAAYQPRATWEHGRKSSPNAPIAGA*
Ga0118657_1000085973300009506Mangrove SedimentMALEIGEIVMLPGYAPYPRYGRVTAREADGRVRVGGVQCGDPRCAAEHRHADQVWTASELLAAQAYQPRAHWEEGRKSSPNAPVD*
Ga0116217_1017586813300009700Peatlands SoilIHLDDIVMLPGYAPYPRYGRVTKFEDDGRVQVADVQCGDPRCASEHKHGDLVWLLADLRAAQAYQARAGWEEGRKSSPNTPVG*
Ga0126374_1185773423300009792Tropical Forest SoilMPAQIGDIVMLPGYHPYPRYGRVAQLEEGDRVRVTGVHCGDPRCATEHHHGDMVLSIAELEGVRAYQARAEWEEGRLSSPNAVIDD*
Ga0126372_1177500023300010360Tropical Forest SoilMPTQIGDIVMLPGYHPYPRYGRVAKLEEGDRVRVTGVHCGDPRCATEHHHSDMVWSIAELEGVRAYQARAEWEEGRLSSPNAVIDD*
Ga0136449_10006489933300010379Peatlands SoilMPVQIGDIVMLPGYAPYPRFGRAVKLEDGDKVCVTDVQCGDPRCAAEHRHGDQIWPAADVCAAKAYQARADWEEGRKSSPNTPLP*
Ga0136449_10006650123300010379Peatlands SoilMQIHLDDIVMLPGYAPYPRYGRVTKFEDDGRVQVADVQCGDPRCASEHKHGDLVWLLADLRAAQAYQARAGWEEGRKSSPNTPVG*
Ga0136847_1161274763300010391Freshwater SedimentMLIHIDDIVMLPGYAPYPRYGRVAKIEDGGRLHVTQVQCGDPRCAAEHQHTDQVWPLAELYAANAYQPRADWEEGRKSSPNTPVD*
Ga0134121_1028463623300010401Terrestrial SoilMPIEIDQAVMLPGYQPFPRYGRVTTRVDEERVMVTQVACGDPRCASEHQHADVVWNAAELEAAQAYQPRAEWEHGRKSSPNTPVES*
Ga0137407_1165898213300012930Vadose Zone SoilMPIQIDDIVMLPGFTPYPRYGRVVQVEGDRVRVTDVQCGDPRCLSEHRHADQVWLAAEVIAAKAYQARAGWEYGRLSSPNAAPPD*
Ga0153915_1002304963300012931Freshwater WetlandsMALEIGEVVMLPGYAPYPRYGRVTAREADGRVRVGGVRCGDPRCAAEHQHADQVWTASELLAAQAYQPRARWEEGRKSSPNVPVD*
Ga0153915_1286845023300012931Freshwater WetlandsMPIPINATVMLPGYTPFPRYGRVARYEDAERVRVTQVQCGDPRCAAEHCHGDEIWRTGDLLGAQAYQPRAGWEQGRKSSPNAPVLA*
Ga0157378_1314090913300013297Miscanthus RhizosphereMSLEIDAVVELPGYKPYPRYGRVSKQVDAEHVLVTQVQCGDPRCAAEHKHGDVVWSTADLEAAQAYQPRAEWELGRRSSPNTPIES*
Ga0075306_102233513300014297Natural And Restored WetlandsMEIRRDEMVTLPGYVPYPRFGRVARIDADGRGVVTDVQCGDPRCAAEHHHSDQVWRLDQLEAARAYQPRAEWEGGRVSSPNAVLP*
Ga0167652_1000321133300015164Glacier Forefield SoilMVVRVGDIVMLSQFTPYPRYGQVAAIEDDGRARVTDVQCGDPRCASEHHHGDLLWSVADVVEARAYQARAGWELGRKSSPNAPVIEE*
Ga0187825_1025849423300017930Freshwater SedimentMAIQIGDVVMLPGYAPYPRYGRIASRPDADHMLVTGVQCGDPRCAAEHRHADQVWSTADIEAARAYQPRARWEEGRKSSPNAPLS
Ga0187766_1008974023300018058Tropical PeatlandMVVRLGDIVMLPGYTPYPRFGRVVQMDDDGRVCVTNVQCGDPRCAAEHRHGDQRWPAADVCAAKAYQARANWEVGRKSSPNTPIA
Ga0187766_1011415623300018058Tropical PeatlandMLPGYHPYPRYGRVAKIEDDERVRVTDVYCGDPRCAAEHLHGDMLWSLADLEAARAYQARAEWEEGRLSSPNAVVEEV
Ga0187773_1015526823300018064Tropical PeatlandMNVQIGSLVMLPGYAPYPRYGYVTTVEDGRARLTHVHCGDPRCASEHHHGDMVCPVDALLAAEAYQPRADWEEGRKSSPNAVTEA
Ga0187892_1003663023300019458Bio-OozeMLHIKIGDMVEHPQYHPYPRYGRAVKEIGDGQVQVTNVECGDPRCATEHHHGDAVWRTADLVSARAYQARAEWEEGRLSSPNAVIVEDKS
Ga0187892_1005139223300019458Bio-OozeMALDKNQLVMLPGYAPYPRYGRAAEILENGQVRVLDIQCGDPRCAAEHHHSDQLWNCADLEAAAAYQPRAAWEQGRTSSPNTPVT
Ga0124853_149535723300024056Freshwater WetlandsMDIGIASVVMLPGYAPYPRYGRLLKQLDGGRVLVGQVQCGDPRCAAEHHHSDVVWSPEDLQAAVAYQPRAPWEHGRKSSPNTPVA
Ga0209172_1030872913300025310Hot Spring SedimentMLIRIGDIVMLPGYAPYPRYGRVAETQDDERLRVTQVQCGDPRCAAEHHHGDVVWNAADVVAVRAYQPRADWEEGRKSSPNVSLS
Ga0210132_105680923300025538Natural And Restored WetlandsLGGDGLATGGMEIRRNEIVMLPGYAPYPRFGRAAHIEADGRVLVTEVQCGDPRCAAEHHHGDQVWRLDQLEAARAYQPRAGWEEGRKSSPNAMLS
Ga0210086_105549823300025615Natural And Restored WetlandsMALEIGEVVMLPGYAPYPRYGRVTAREADGCVRVGGVQCGDPRCAAEHRHADQAWPASELLAAQAYQPRAQWEEGRKSSPNAPVD
Ga0207708_1104751523300026075Corn, Switchgrass And Miscanthus RhizosphereMHFSIDDVVMLPGLHPYPRYGRIAAVEEDGQVRVTHVHCGDPRCAAEHRHGEERWAPNDLLAARAYQPRAEWEHGRKSSPNAPIE
Ga0179587_1094586013300026557Vadose Zone SoilRVVKIEDDDRVRVTAVQCGDPRCVSEHHHCDQVWRAADVVQARAYQARAEWEEGRKSSPNAPMIEE
Ga0209117_101793223300027645Forest SoilMLVHVGDIVMLPQFTPYPRYGRAVKIEDGERVRVTDVLCGDPRCESEHLHGDQVWRVADVLDARAYQARAEWELGRRSSPNAPVIEE
Ga0209514_1010969523300027819GroundwaterMAIAIDTTVMLPGYAPYPRYGRVGKHLDGGQMQITNVQCGDPRCASEHAHADAVWSAAALEAANAYQPRAGWELGRKSSANAPGEG
Ga0209668_1012491723300027899Freshwater Lake SedimentMDIGIGSVVMLPGYAPYPRYGRLLKQVEEGQVLVGQVQCGDPRCAAEHHHGDVVWSPEAVQAAGAYQPRAPWEHGRKSSPNTPLD
Ga0209253_1028164823300027900Freshwater Lake SedimentMHPGYHPYPRYGRVVEQVDDSHVRVTAVQCGDPRCAAEHAHGDLVWQANDLVATEAYQARAEWEEGRISSPNAVIEGHS
Ga0209048_10001118183300027902Freshwater Lake SedimentMDVQIGSLVMLPGYAPYPRYGRVATVEDGHAHLTRVHCGDPRCAAEHHHGDVVWPLEELQAVQAYQPRADWEAGRNSSPNAVVIEE
Ga0209415_10003060193300027905Peatlands SoilMQIHLDDIVMLPGYAPYPRYGRVTKFEDDGRVQVADVQCGDPRCASEHKHGDLVWLLADLRAAQAYQARAGWEEGRKSSPNTPVG
Ga0209415_1013971133300027905Peatlands SoilMLAQVGDIVMLPGYAPYPRFGRAVKLEDGDKVCVTDVQCGDPRCAAEHRHGDQIWPAADVCAAKAYQARADWEEGRKSSPNAPIS
Ga0268265_1009531923300028380Switchgrass RhizosphereMPMSLSPNQLVMLPGYQPYPRYGRVAEILEDGAVRVSGVHCGDPRCASEHHHGDQVWPADQIEAVAAYQPRAPWEHGRKSSPNATVG
Ga0299906_1047693123300030606SoilMSTQLNQTVMLPGYAPYPRYGRVAEILDPDQVRVTDVICGDPRCAAEHFHGDQLWNAFELEAAAAYQPRAPWEHGRKSSPNATVE
Ga0265330_1000667953300031235RhizosphereMPIQIDATVMLPGFKPYPRYGRITKQVDAEHVLVTQVQCGDPRCASEHKHGDVVWNAAELEAAQAYQPRAAWELGRLSSPNTPVDS
Ga0265330_1006984023300031235RhizosphereMAISLDAIVMIPGFKPYPRYGRITKQVDPEHVLVTQVQCGDPRCAAEHQHGDLVWNTAELEAAQAYQPRADWELGRKSSPNAPVDS
Ga0265320_1001011713300031240RhizosphereIQIDATVMLPGFKPYPRYGRITKQVDAEHVLVTQVQCGDPRCASEHKHGDVVWNAAELEAAQAYQPRAAWELGRLSSPNTPVDS
Ga0265329_1011353413300031242RhizosphereMAISLDAIVMIPGFKPYPRYGRITKQVDPEHVLVTQVQCGDPRCAAEHQHGDLVWNTAELEAAQAYQPRADWELG
Ga0265340_1045997013300031247RhizosphereMPIQIDATVMLPGFKPYPRYGRITKQVDAEHVLVTQVQCGDPRCASEHKHGDVVWNAAELEAAQAYQPRAAWELGRLS
Ga0265313_1033198923300031595RhizosphereVMLPGFKPYPRYGRVTKHIDDERVLVTQVQCGDPRCAAEHQHGDGVWNAAELEATQAYQPRAPWEHGRKSSPNTPVDS
Ga0315540_1002380743300032061Salt Marsh SedimentMALEIGEVVMLPGYAPYPRYGRVAAREADGRVRVAAVHCGDPRCAAEHRHGDQVWPVAALLAAQAYQPRAPWEEGRKSSPNAPVE
Ga0311301_1042788113300032160Peatlands SoilMPVQIGDIVMLPGYAPYPRFGRAVKLEDGGKVYVTDVQCGDPRCAAEHRHGDQIWPAADVCAAKAYQARADWEEGRKSSPNTPLP
Ga0315286_1004520253300032342SedimentMLTASIDIVAFPGFAPYPRYGRIVAFEDSDVRVTDVHCGDPRCLAEHKHGDQVWPIAELQAAQAYQPQAEWELGRKSAPNATAWS
Ga0335085_1004617873300032770SoilMNVQIGSLVMLPGYAPYPRYGYVTKVEDGRAQLTHVHCGDPRCASEHHHGDITCPVDELLAAQAYQPRADWEEGRRSSPNAVTDA
Ga0335085_1106170223300032770SoilMPIQIDAIVMLPGFKPYPRYGRITKQIDAEHVLVTQVQCGDPRCAAEHKHGDGVWSAAELEAAQAYQPRAEWEHGRKSSPNTPVDS
Ga0335085_1173952823300032770SoilMDVQIGALVMLPGYAPYPRYGHVVKVEDNRAHLTHVHCGDPRCAAEHHHGDVVWPLQELEAVQAYQPRAEWEEGRKSSPNAVVEA
Ga0335082_1000649543300032782SoilMAIQIDQVVMLPGYQPYPRYGRVAQLTSETALVTDVRCGDPRCASEHHHADQTWGIADLLAARAYQPRARWELGRMSSPNTPLS
Ga0335082_1000790153300032782SoilMNVQIGSLVMLPGYAPYPRYGYVTKVEDGRAQLTHVHCGDPRCASEHHHGDMTCPVDELLAAQAYQPRADWEEGRRSSPNAVTDA
Ga0335082_1009065533300032782SoilMDVQIGALVMLPGYAPYPRYGHVVKVEDNRAHLTHVHCGDPRCAAEHHHGDVVWLLQELEAVQAYQPRADWEEGRKSSPNAVVDA
Ga0335082_1155008613300032782SoilMDVQIGSVVMLPGYAPYPRYGHVVKVDEGRVHLTRVHCGDPRCAAEHQHGDVVWPLEELLGVQAYQPRADWEEG
Ga0335079_1188469013300032783SoilMQVRIDDVVMLPGYQPFPRYGRVAAIEEGERVRVTGISCGDPRCAAEHQHGDMVWRMADLEGAKSYQPRAHWEEGRWSSPNVPVST
Ga0335070_1000269713300032829SoilHMDVHIGSLVMLPGYAPYPRYGRVEKVEDGQVRLTNVHCGDPRCAAEHCHGDVVWPVDALLAIQAYQPRADWEEGRKSSPNAVVES
Ga0335070_1006445053300032829SoilMVQIDQIVTLPGYQPYPRFGRVAKLLDDGSVLVTAVQCGDPRCAAEHAHGDVAWPAAALEATQAYQPRATWELGRKSSPNTPVE
Ga0335070_1043802823300032829SoilMDIRIGTLVMLPGYAPYPRYGHVTKVDDGRVHASRVHCGDPRCAAEHQHRDTAWLLEDVRAVQAYQPRAEWEEGRLSSPNAVVNP
Ga0335070_1157357023300032829SoilMDVQIGSLVMLPGYAPYPRYGRVVKVEDGSVHLTHVHCGDPRCAAEHHHGDVVWPLPELRAVEAYQPRADWEEGRKSSPNAVIDA
Ga0335069_1001617763300032893SoilMAIEIDAAVMLPGYAPYPRYGRVAKRVDADHVLVIGVQCGDPRCAGEHQHADQVWPAAELEAARAYQPRADWERGRKSSPNTALP
Ga0335069_1003381643300032893SoilMAIQIDQVVMLPGYQPYPRYGRVAQLTCETALVTDVRCGDPRCASEHHHADQTWGIADLLAARAYQPRARWELGRMSSPNTPLS
Ga0335069_1030511523300032893SoilMDVHIGSLVMLPGYAPYPRYGRVEKVEDGQVRLTNVHCGDPRCAAEHCHGDVVWPVDALLAIQAYQPRADWEEGRKSSPNAVVES
Ga0335069_1040527123300032893SoilMRVQINAMVMLPGYAPYPRYGRVAKFVDDANVLVTQVLCGDPRCAAEHAHNDVVWNVAELESSQAYQPRAGWELGRLSSPNAVIEK
Ga0335084_1107584123300033004SoilMDVQIGSIVMLPGYAPYPRYGHVVKVEDNRVHLTHVHCGDPRCAAEHHHGDVVWPLEELHAVQAYQPRADWEEGRKSSPNAVVDS
Ga0316605_1066728023300033408SoilMDIGIGSVVMLPGYAPYPRFGRLLAHLDGGRVLVGQVQCGDPRCAAEHHHGDVVWSPEDLRAAVAYQPRAPWEHGRKSSPNTPLD
Ga0316603_1083090623300033413SoilGIGSVVMLPGYAPYPRFGRLLAHLDGGRVLVGQVQCGDPRCAAEHHHGDVVWSPEDLRAAVAYQPRAPWEHGRKSSPNTPLD
Ga0316619_1106538223300033414SoilMDIGIASVVMLPGYAPYPRYGRLLKQLDGGRVLVGQVQCGDPRCAAEHHHSDVVWSPEDLQAAVAYQPRAPWEHGRKSSPNTPVD
Ga0316622_100001090103300033416SoilMSVALDMLVMLPGYLPYPRYGRVAKLLDEKSVLISQVHCGDPRCAAEHAHGDGVWPADALEAVAAYQPRATWEHGRKSSPNAPIAGA
Ga0316622_10008712353300033416SoilMDIGIASVVMLPGYAPYPRYGRLLKQLDGGRVLVGQVQCGDPRCAAEHHHSDVVWSPEDLQA
Ga0316622_10070015433300033416SoilMHPGYHPYPRYGRVVEQVDDSHVRVTAVQCGDPRCAAEHAHGDLVWQANDLVATEAYQARAEWEEGRISSPNAVIEGDR
Ga0316601_10043007033300033419SoilMDIGIGSVVMLPGYAPYPRYGRLLKQLEEGRVLVGQVQCGDPRCAAEHHHSDVVWSPEELQAAGAYQPRAPWEHGRKSSPNTPLD
Ga0316601_10089693013300033419SoilMDIGIASVVMLPGYAPYPRYGRLLKQLDGGRVLVGQVQCGDPRCAAEHHHSDVVWSPEDLQAAVAYQPRA
Ga0316613_1037449923300033434SoilMLPGYLPYPRYGRVAKLLDEKSVLISQVHCGDPRCAAEHAHGDGVWPADALEAVAAYQPRATWEHGRKSSPNAPIAGA
Ga0316620_1021833913300033480SoilMALEIGEVVMLPGYAPYPRYGRVTAREADGRVRVGGVRCGDPRCAAEHQHADQVWTASELLAAQAYQPRARWEEGRKSSPNVPVD
Ga0316620_1086594823300033480SoilAPYPRYGHVVKVDDGNVHLTHVHCGDPRCAAEHQHGDVVWPLEELRGVHAYQPRANWEEGRKSSPNAVVDA
Ga0316627_10047854333300033482SoilMDIGIGSVVMLPGYAPYPRYGRLLKQLEEGRVLVGQVRCGDPRCAAEHHHSDVVWSPEELQAAGAYQPRAPWEHGRKSSPNTPLD
Ga0316627_10155966013300033482SoilMDIGIGSVVMLPGYAPYPRFGRLLAHLDGGRVLVSQVQCGDPRCAAEHHHGDVVWSPEDLRAAVAYQPRAPWEHGR
Ga0316617_10082070523300033557SoilMDIGIASVVMLPGYAPYPRYGRLLKQLDGGRVLVGQVQCGDPRCAAEHHHSDVVWSPEDLQAA
Ga0316617_10216139423300033557SoilMDIRIGSVVMLPGYAPYPRYGRLLEHLDGGRVLVGQVQCGDPRCAAEHHHGDVVWSPEDLHAAVAYQPRAPWEHGRKSSPNTPLD
Ga0370498_103031_338_5953300034155Untreated Peat SoilMHFAIDDQVMLPGLQPYPRYGRIAGVEQDGRVRVTHVHCGDPRCASEHRHGDEPWPPSELLAARAYQPRAEWEHGRLSSPNASLG


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.