Metagenome Family F105439

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F105439
Family Type	Metagenome
Number of Sequences	100
Average Sequence Length	42 residues
Representative Sequence	GIEVGAYYTGNNAKSAFYTDLTNYNTAKDRGVVYVKKTF
Number of Associated Samples	89
Number of Associated Scaffolds	100

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	3.00 %
% of genes near scaffold ends (potentially truncated)	91.00 %
% of genes from short scaffolds (< 2000 bps)	93.00 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.25

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (87.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere (8.000 % of family members)
Environment Ontology (ENVO)	Unclassified (42.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (33.000 % of family members)

Multiple Sequence Alignments

Select alignment to view:

Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60. 1JGI11615J12901_116009492 2JGI1027J12803_1084129502 3Ga0031656_102038011 4Ga0062593_1023570712 5Ga0066599_1007960731 6Ga0066395_105415501 7Ga0066679_110375842 8Ga0070660_1004383741 9Ga0070671_1009737751 10Ga0070671_1020177442 11Ga0074259_107347562 12Ga0066691_108022022 13Ga0068859_1017442143 14Ga0068864_1015565723 15Ga0068861_1005276311 16Ga0068851_102700343 17Ga0068858_1007790631 18Ga0068860_1012943271 19Ga0066652_1013411111 20Ga0075026_1005668781 21Ga0079037_1010143231 22Ga0079037_1014874083 23Ga0079222_110096271 24Ga0079220_121020841 25Ga0075428_1008213621 26Ga0079217_103562493 27Ga0105090_100033959 28Ga0105092_108187111 29Ga0113563_110439264 30Ga0105242_119839713 31Ga0115028_112035573 32Ga0105237_113946893 33Ga0116146_13652202 34Ga0126313_110652113 35Ga0134109_102960463 36Ga0134065_102489261 37Ga0137399_110252441 38Ga0136614_104475373 39Ga0157282_100688133 40Ga0075359_11066851 41Ga0075349_10600473 42Ga0180104_12571761 43Ga0180077_11317501 44Ga0132258_101177914 45Ga0132255_1007920183 46Ga0132255_1036334763 47Ga0132255_1045719761 48Ga0132255_1049483082 49Ga0184604_103024501 50Ga0190265_133129941 51Ga0066655_102354773 52Ga0210378_100925391 53Ga0210379_103900721 54Ga0193719_101736411 55Ga0210409_113077291 56Ga0247752_10737652 57Ga0207656_100492871 58Ga0207707_105274771 59Ga0207681_102024843 60Ga0207681_114518271 61Ga0207690_105288721 62Ga0207691_109085141 63Ga0207711_103441311 64Ga0210104_10353853 65Ga0207668_105922921 66Ga0208415_10182481 67Ga0207639_100181171 68Ga0207678_101095591 69Ga0207641_123194062 70Ga0209856_10034263 71Ga0209798_103042693 72Ga0209069_101497051 73Ga0209391_100318323 74Ga0209391_101456863 75Ga0268264_101373521 76Ga0268264_107893011 77Ga0302254_100539011 78Ga0255310_101539993 79Ga0307408_1024525682 80Ga0307469_106418131 81Ga0307410_101525001 82Ga0307410_118339161 83Ga0306925_102714931 84Ga0318559_105913101 85Ga0318514_108005461 86Ga0307415_1012645961 87Ga0315281_120417251 88Ga0315283_116294241 89Ga0315283_118992001 90Ga0307471_1023128771 91Ga0315287_111076203 92Ga0315273_113731813 93Ga0316605_111500051 94Ga0310810_111148193 95Ga0316603_102416681 96Ga0316603_123049962 97Ga0316625_1014918993 98Ga0326726_121101652 99Ga0316621_106767221 100Ga0364943_0017225_1_120
Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60. 1JGI11615J12901_116009492 2JGI1027J12803_1084129502 3Ga0031656_102038011 4Ga0066599_1007960731 5Ga0066679_110375842 6Ga0070660_1004383741 7Ga0074259_107347562 8Ga0066691_108022022 9Ga0068859_1017442143 10Ga0068858_1007790631 11Ga0075026_1005668781 12Ga0079037_1010143231 13Ga0105090_100033959 14Ga0157282_100688133 15Ga0075349_10600473 16Ga0132258_101177914 17Ga0132255_1036334763 18Ga0190265_133129941 19Ga0208415_10182481 20Ga0209856_10034263 21Ga0209391_101456863 22Ga0307469_106418131 23Ga0307410_118339161 24Ga0307471_1023128771 25Ga0316605_111500051
Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38. 1Ga0137399_110252441 2Ga0031656_102038011 3Ga0066599_1007960731 4Ga0066395_105415501 5Ga0066679_110375842 6Ga0070660_1004383741 7Ga0074259_107347562 8Ga0066691_108022022 9Ga0068864_1015565723 10Ga0068861_1005276311 11Ga0075026_1005668781 12Ga0079037_1010143231 13Ga0079217_103562493 14Ga0105092_108187111 15Ga0113563_110439264 16Ga0115028_112035573 17Ga0116146_13652202 18Ga0126313_110652113 19Ga0075359_11066851 20Ga0180104_12571761 21Ga0180077_11317501 22Ga0132255_1007920183 23Ga0132255_1036334763 24Ga0132255_1049483082 25Ga0066655_102354773 26Ga0193719_101736411 27Ga0210409_113077291 28Ga0247752_10737652 29Ga0207656_100492871 30Ga0207690_105288721 31Ga0210104_10353853 32Ga0208415_10182481 33Ga0207639_100181171 34Ga0207641_123194062 35Ga0209798_103042693 36Ga0209069_101497051 37Ga0209391_100318323 38Ga0209391_101456863 39Ga0307469_106418131 40Ga0307410_118339161 41Ga0306925_102714931 42Ga0315283_116294241 43Ga0326726_121101652 44Ga0316621_106767221 45Ga0364943_0017225_1_120
Powered by MSAViewer

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 4.48% β-sheet: 23.88% Coil/Unstructured: 71.64%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
WebGL does not seem to be available. This can be caused by an outdated browser, graphics card driver issue, or bad weather. Sometimes, just restarting the browser helps. Also, make sure hardware acceleration is enabled in your browser. For a list of supported browsers, refer to http://caniuse.com/#feat=webgl. Load File(s)

Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.25
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.25
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 100 Family Scaffolds
PF00543	P-II	70.00
PF00909	Ammonium_transp	17.00
PF09604	Potass_KdpF	2.00
PF03193	RsgA_GTPase	1.00
PF09694	Gcw_chp	1.00
PF00359	PTS_EIIA_2	1.00
PF03951	Gln-synt_N	1.00
PF03814	KdpA	1.00
PF04339	FemAB_like	1.00
PF00378	ECH_1	1.00

Showing 1 to 10 of 12 entries

Previous1 2Next

COG ID	Name	Functional Category	% Frequency in 100 Family Scaffolds
COG0347	Nitrogen regulatory protein PII	Signal transduction mechanisms [T]	70.00
COG0004	Ammonia channel protein AmtB	Inorganic ion transport and metabolism [P]	17.00
COG0174	Glutamine synthetase	Amino acid transport and metabolism [E]	1.00
COG1162	Ribosome biogenesis GTPase RsgA	Translation, ribosomal structure and biogenesis [J]	1.00
COG2060	K+-transporting ATPase, KdpA subunit	Inorganic ion transport and metabolism [P]	1.00
COG2960	Ubiquinone biosynthesis accessory factor UbiK	Coenzyme transport and metabolism [H]	1.00
COG3146	Predicted N-acyltransferase	General function prediction only [R]	1.00

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	87.00 %
Unclassified	root	N/A	13.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	87.00 %
Unclassified	root	N/A	13.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	87.00 %
Unclassified	root	N/A	13.00 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	77.00 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.00 %
Unclassified	root	N/A	13.00 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.00 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	53.00 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1.00 %
Hydrogenophilalia	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Hydrogenophilalia	11.00 %
Unclassified	root	N/A	13.00 %

Name	Rank	Taxonomy	Distribution
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	7.00 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1.00 %
Hydrogenophilales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Hydrogenophilalia → Hydrogenophilales	11.00 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.00 %
Unclassified	root	N/A	13.00 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	1.00 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.00 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	5.00 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1.00 %
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1.00 %
Hydrogenophilales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Hydrogenophilalia → Hydrogenophilales	11.00 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1.00 %
Unclassified	root	N/A	13.00 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.00 %
Burkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	3.00 %
Hydrogenophilales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Hydrogenophilalia → Hydrogenophilales	11.00 %
Peptococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptococcaceae	1.00 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	1.00 %
Unclassified	root	N/A	13.00 %
Variovorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	1.00 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.00 %
Desulfosporosinus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptococcaceae → Desulfosporosinus	1.00 %
Hydrogenophilales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Hydrogenophilalia → Hydrogenophilales	11.00 %
pseudomallei group	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → pseudomallei group	3.00 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	1.00 %
Unclassified	root	N/A	13.00 %
Variovorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	1.00 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.00 %
Burkholderia pseudomallei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → pseudomallei group → Burkholderia pseudomallei	3.00 %
Candidatus Desulfosporosinus infrequens	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptococcaceae → Desulfosporosinus → Candidatus Desulfosporosinus infrequens	1.00 %
Hydrogenophilales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Hydrogenophilalia → Hydrogenophilales	11.00 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	1.00 %
Unclassified	root	N/A	13.00 %
Variovorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	1.00 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.00 %
Burkholderia pseudomallei 1710b	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → pseudomallei group → Burkholderia pseudomallei → Burkholderia pseudomallei 1710b	3.00 %
Candidatus Desulfosporosinus infrequens	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptococcaceae → Desulfosporosinus → Candidatus Desulfosporosinus infrequens	1.00 %
Hydrogenophilales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Hydrogenophilalia → Hydrogenophilales	11.00 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	1.00 %
Unclassified	root	N/A	13.00 %
Variovorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	1.00 %

Visualization
Download SVG Download PNG Download CSV
Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
(restricted) 3300031197\|Ga0255310_10153999	All Organisms → cellular organisms → Bacteria → Proteobacteria → Hydrogenophilalia → Hydrogenophilales	632	Open in IMG/M
3300000953\|JGI11615J12901_11600949	Not Available	553	Open in IMG/M
3300000955\|JGI1027J12803_108412950	All Organisms → cellular organisms → Bacteria → Proteobacteria	589	Open in IMG/M
3300003858\|Ga0031656_10203801	All Organisms → cellular organisms → Bacteria → Proteobacteria	678	Open in IMG/M
3300004114\|Ga0062593_102357071	Not Available	600	Open in IMG/M
3300004282\|Ga0066599_100796073	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	663	Open in IMG/M
3300004633\|Ga0066395_10541550	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	676	Open in IMG/M
3300005176\|Ga0066679_11037584	Not Available	509	Open in IMG/M
3300005339\|Ga0070660_100438374	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1083	Open in IMG/M
3300005355\|Ga0070671_100973775	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	743	Open in IMG/M

Showing 1 to 10 of 100 entries

Previous1 2 3 4 5…10Next

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Engineered	Engineered	1.00%
Environmental	Environmental	65.00%
Host-Associated	Host-Associated	34.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	25.00%
Plants	Host-Associated → Plants	34.00%
Terrestrial	Environmental → Terrestrial	40.00%
Wastewater	Engineered → Wastewater	1.00%

Habitat	Taxonomy	Distribution
Anaerobic Digestor	Engineered → Wastewater → Anaerobic Digestor	1.00%
Floodplain	Environmental → Terrestrial → Floodplain	1.00%
Freshwater	Environmental → Aquatic → Freshwater	19.00%
Marine	Environmental → Aquatic → Marine	1.00%
Peat	Environmental → Terrestrial → Peat	2.00%
Rhizoplane	Host-Associated → Plants → Rhizoplane	17.00%
Rhizosphere	Host-Associated → Plants → Rhizosphere	17.00%
Sediment	Environmental → Aquatic → Sediment	5.00%
Soil	Environmental → Terrestrial → Soil	37.00%

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	11.00%
Ice	Environmental → Aquatic → Freshwater → Ice	1.00%
Lake	Environmental → Aquatic → Freshwater → Lake	5.00%
Lentic	Environmental → Aquatic → Freshwater → Lentic	1.00%
Loam	Environmental → Terrestrial → Soil → Loam	2.00%
Pond	Environmental → Aquatic → Freshwater → Pond	1.00%
Sand	Environmental → Terrestrial → Soil → Sand	2.00%
Sediment	Environmental → Aquatic → Freshwater → Sediment	7.00%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	1.00%
Soil	Host-Associated → Plants → Rhizosphere → Soil	9.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	25.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.00%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	6.00%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.00%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.00%
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified	1.00%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	8.00%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	4.00%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.00%

Habitat	Taxonomy	Distribution
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.00%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.00%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.00%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.00%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.00%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	5.00%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	1.00%
Sediment	Environmental → Aquatic → Freshwater → Pond → Sediment	1.00%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	11.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	9.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	8.00%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	8.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.00%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	7.00%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	6.00%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.00%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	4.00%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	2.00%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.00%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	1.00%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.00%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	1.00%
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified	1.00%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.00%
Anaerobic Digestor Sludge	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge	1.00%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	6.00%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.00%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	3.00%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.00%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.00%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	1.00%
Freshwater	Environmental → Aquatic → Freshwater → Pond → Sediment → Freshwater	1.00%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	1.00%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	4.00%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	3.00%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.00%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.00%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	2.00%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.00%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.00%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.00%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.00%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	2.00%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.00%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	1.00%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	1.00%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.00%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	4.00%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	1.00%
Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Sand	1.00%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	1.00%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	5.00%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	1.00%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.00%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	5.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.00%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	2.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.00%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	8.00%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	5.00%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.00%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.00%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.00%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.00%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	1.00%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	1.00%

Visualization
Download SVG Download PNG Download CSV
Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000953	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300003858	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - DIP11 DI	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004282	Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Initial sediment	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005507	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample Mutant cpr5	Host-Associated	Open in IMG/M

Showing 1 to 10 of 89 entries

Previous1 2 3 4 5…9Next

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI11615J12901_116009492	3300000953	Soil	ELGAYYTGNNAKSLPYTDLNNYDTSKDRGVFYVKKTF*
JGI1027J12803_1084129502	3300000955	Soil	GVSYTVPEGFFKNFELGAYYTGSDAKSRFYTDLTGRDTSKDRGIVYVKKTF*
Ga0031656_102038011	3300003858	Freshwater Lake Sediment	VPDGTMKGLEFGAYYTGTTAERPFYTDLTGYDTGRDRGVIYVKKTF*
Ga0062593_1023570712	3300004114	Soil	GVLKGLELGAYYTGNNAKSLPYTDLTNYDTSKDRGVFYVKKTF*
Ga0066599_1007960731	3300004282	Freshwater	VKGLEVGAYYSGNNANTAFYTDLTGYKTAKDVGVLYVKKTF*
Ga0066395_105415501	3300004633	Tropical Forest Soil	APDGFFKNFEVGAYYTGSDAKSRFYTDLTGRDTSKDRGVIYVKKTF*
Ga0066679_110375842	3300005176	Soil	WKAGVSYTVPEGLFKNIELGAYYTGNNATSFFYTDLTGLDTARSRGVAYVKKTF*
Ga0070660_1004383741	3300005339	Corn Rhizosphere	VPDGTFLKGLEVGAYYTDNNAKDTFYTDLTGYDTAKARGVVYVKKTF*
Ga0070671_1009737751	3300005355	Switchgrass Rhizosphere	DGTFLKGLEVGAYYTDNNAKEPFYTDLTGYDTAKARGVVYVKKTF*
Ga0070671_1020177442	3300005355	Switchgrass Rhizosphere	PVKGLELGAYYTDNNAKEAFYTDLTGYDTSKARGVVYVKKTF*
Ga0074259_107347562	3300005507	Arabidopsis Rhizosphere	VPDGVLKGLEVGAYYTGNDSDSKFWTDVTGYDTAKDRGVLYVKKTF*
Ga0066691_108022022	3300005586	Soil	EGLFKSVELGAYYTDSNAKQRFYTDLTGYDTTKARGVVYVKKTF*
Ga0068859_1017442143	3300005617	Switchgrass Rhizosphere	GAYYTGNNATTPFYTDLTGYNTAKDRGVVYVKKTF*
Ga0068864_1015565723	3300005618	Switchgrass Rhizosphere	GIEFGAYYTGNNATTPFYTDLTGYNTAKDRGVVYVKKTF*
Ga0068861_1005276311	3300005719	Switchgrass Rhizosphere	EIGAYYSGNNAESAPYTDLTGYDTSKDRGVIYVKKTF*
Ga0068851_102700343	3300005834	Corn Rhizosphere	ELGAYYTDNNAKEAFYTDLTGYDTSKARGVVYVKKTF*
Ga0068858_1007790631	3300005842	Switchgrass Rhizosphere	AYYSGNDAKKAFYTDTTGYNTAKDVAVVYVKKTF*
Ga0068860_1012943271	3300005843	Switchgrass Rhizosphere	IPDGVMKGLEVGAYYTGNNAKSLPYTDLTNYDTSKDRGVLYVKKTF*
Ga0066652_1013411111	3300006046	Soil	IEFGAYYTGNNANTAFYTDLNGFNTAKDTGVAYVKKTF*
Ga0075026_1005668781	3300006057	Watersheds	GVEVGAYYSANDAKKAFYTDLTGYNTAKSTGVVYVKKTF*
Ga0079037_1010143231	3300006224	Freshwater Wetlands	ADGVLKGVEFGAYYSGNNAENAFYTDLTGYNTAKDRGVVYVKKTF*
Ga0079037_1014874083	3300006224	Freshwater Wetlands	VGAYYSGNNAKEGFYTDLTGYNTAKDRGVFYVKKTF*
Ga0079222_110096271	3300006755	Agricultural Soil	DGTVFKGLEVGAYYTDNNAKEPFYTDLTGYDTSKARGVVYVKKTF*
Ga0079220_121020841	3300006806	Agricultural Soil	LGAYYTDNNAREAFYTDLTGYDTSKARGVVYVKKTF*
Ga0075428_1008213621	3300006844	Populus Rhizosphere	KGFEVGAYYSGNNAKKAFYTDTTGYNTAKDVGVVYVKKTF*
Ga0079217_103562493	3300006876	Agricultural Soil	AYTVPVGAVKGLELGAYYTDNDAKKRFYTDLTGYDTSKARGVVYVKKTF*
Ga0105090_100033959	3300009075	Freshwater Sediment	VAEGAFKGVEVGAYYSGNNAKKAFYTGLTGYNIAKDVGVVFIKKTS*
Ga0105092_108187111	3300009157	Freshwater Sediment	GVEVGAYYSGNTAKSAFYTDLTGYDTSKDRGVVYVKKTF*
Ga0113563_110439264	3300009167	Freshwater Wetlands	VPDGVLKGVEFGAYYSGNNAESAFYTDPTGYNNGKEIGVVYVKKTF*
Ga0105242_119839713	3300009176	Miscanthus Rhizosphere	GAYYTGNNAKSLPYTDLTNYDTSKDRGVLYVKKTF*
Ga0115028_112035573	3300009179	Wetland	GAFKGIEVGAYYSGNNAKKAFYTDLTGYNTAKDVGVVYVKKTF*
Ga0105237_113946893	3300009545	Corn Rhizosphere	FKGLEVGAYYTDNNAKEPFYTDLTGYDTSKARGVVYVKKTF*
Ga0116146_13652202	3300009664	Anaerobic Digestor Sludge	GVFKGLEIGAYYSGNNAESIPYTDLNGYDTAKDRGVVYVKKTF*
Ga0126313_110652113	3300009840	Serpentine Soil	AKGLELGAYYTDNNAQQAFYTDLTGYDTAKARGVIYVKKTF*
Ga0134109_102960463	3300010320	Grasslands Soil	PDGVLKGIEFGAYYTGNNANTAFYTDLNGFNTAKDTGVAYVKKTF*
Ga0134065_102489261	3300010326	Grasslands Soil	GAYYTDSNAKQRFYTDLTGYDTTKARGVVYVKKTF*
Ga0137399_110252441	3300012203	Vadose Zone Soil	GIEVGAYYTGNNAKSAFYTDLTNYNTAKDRGVVYVKKTF*
Ga0136614_104475373	3300012684	Polar Desert Sand	AYYAGNNAKSRFYTDLSGYDTSKDRGVVYVKKTF*
Ga0157282_100688133	3300012904	Soil	GGSYTIPDGVMKGLELGAYYTGNNAKSLPYTDLTNYDTSKDRGVFYVKKTF*
Ga0075359_11066851	3300014266	Natural And Restored Wetlands	LFKGTEIGAYYSGNNAESAPYTDLTGYNTAKSVGVVYVKKTF*
Ga0075349_10600473	3300014305	Natural And Restored Wetlands	LEIGAYYSDTNSDGGFYTDLTGKDTAKATGVVYVKKTF*
Ga0180104_12571761	3300014884	Soil	DGVLKGIEIGAYYTGNNAKSPFYTYLTGYDTSKDRGVVYVKKTF*
Ga0180077_11317501	3300015255	Soil	GLEIGAYYSGNNAQSTPYTDLTGYNTAKDRGVVYVKKTF*
Ga0132258_101177914	3300015371	Arabidopsis Rhizosphere	VPDGFFKSFEIGAYYTGNTANEGFYTDLTGYNMAKDAGIAYIKKTF*
Ga0132255_1007920183	3300015374	Arabidopsis Rhizosphere	VPDGFFKSFEIGAYYTGNTANEGFYTDLTGYNTAKDAGIVYIKKTF*
Ga0132255_1036334763	3300015374	Arabidopsis Rhizosphere	GSYGVGDGLLKGFEFGAYYTSNDANKAFYTDTTGYNTPKNAFVGYVKKTF*
Ga0132255_1045719761	3300015374	Arabidopsis Rhizosphere	AYYTGNNAKSLPYTDLTNYDTSKDRGVVYVKKTF*
Ga0132255_1049483082	3300015374	Arabidopsis Rhizosphere	FLKGVEVGAYYSWNNANDAFYTDLTGYNTGKNRGVVYVKKTF*
Ga0184604_103024501	3300018000	Groundwater Sediment	KNVEVGAYYTGNDAKQRFYTDLTGYNTAKDRGVVYVKKTF
Ga0190265_133129941	3300018422	Soil	LGAYYTDNDAKKRFYTDLNGYDTTKARGVVYVKKTF
Ga0066655_102354773	3300018431	Grasslands Soil	KGIEFGAYYTGNNANTAFYTDLNGFNTAKDTGVAYVKKTF
Ga0210378_100925391	3300021073	Groundwater Sediment	GVLKGIELGAYYTGNNAKSAFYTDLTGRDTAKDRGVVYVKKTF
Ga0210379_103900721	3300021081	Groundwater Sediment	DGVLKGIEVGAYYTGNNAKSAFYTDLTGRDTAKDRGVVYVKKTF
Ga0193719_101736411	3300021344	Soil	NVEVGAYYTGNDAKQRFYTDLTGYNTAKDRGVVYVKKTF
Ga0210409_113077291	3300021559	Soil	VIKGVEVGAYYTGNDAKKRFYTDLTGYNTAKDRGIFYVKKTF
Ga0247752_10737652	3300023071	Soil	IPDGVLKGLELGAYYTGNNAKSLPYTDLTNYDTSKDRGVFYVKKTF
Ga0207656_100492871	3300025321	Corn Rhizosphere	LEVGAYYSGNDAKKAFYTDTTGYNTAKDVAVVYVKKTF
Ga0207707_105274771	3300025912	Corn Rhizosphere	NVEVGAYYTGNDAKSRFYTDMSGYNTAKDRGVVYVKKTF
Ga0207681_102024843	3300025923	Switchgrass Rhizosphere	IGAYYTGNNAKSLPYTDLTNYDTSKDRGVLYVKKTF
Ga0207681_114518271	3300025923	Switchgrass Rhizosphere	LELGAYYTGNNAKSLPYTDLTNYDTSKDRGVFYVKKTF
Ga0207690_105288721	3300025932	Corn Rhizosphere	TVADGLFKGTELGAYYTDNNAREAFYTDLTGYDTSKARGVVYVKKTF
Ga0207691_109085141	3300025940	Miscanthus Rhizosphere	TIPDGVLKGLELGAYYTGNNAKSLPYTDLTNYDTSKDRGVLYVKKTF
Ga0207711_103441311	3300025941	Switchgrass Rhizosphere	LMKGLEIGAYYTGNNAKSLPYTDLTNYDTSKDRGVLYVKKTF
Ga0210104_10353853	3300025956	Natural And Restored Wetlands	VPEGVFKGLEIGAYYSDTNSDGGFYTDLTGRDTAKSTGVVYVKKTF
Ga0207668_105922921	3300025972	Switchgrass Rhizosphere	PDGLMKGLEIGAYYTGNNAKSLPYTDLTNYDTSKDRGVFYVKKTF
Ga0208415_10182481	3300025993	Rice Paddy Soil	YTVPDGLFRNVEIGAYYTGNDAKSRFYTDLSGYDTAKDRGVVYVKKTF
Ga0207639_100181171	3300026041	Corn Rhizosphere	VEVGAYYTDNDAKAPFYTDATGYDTSKARGVVYVKKTF
Ga0207678_101095591	3300026067	Corn Rhizosphere	TELGAYYTDNNAREAFYTDLTGYDTSKARGVVYVKKTF
Ga0207641_123194062	3300026088	Switchgrass Rhizosphere	WKIGFSYTVPDGLFKNVELGAYYTGSDAKSRFYTDLTGLDTSRNRGVAYVKKTF
Ga0209856_10034263	3300026837	Sand	SYTVPDGLFKGTEIGAYYSGNNAESAPYTDLTGYNTAKSVGVVYVKKTF
Ga0209798_103042693	3300027843	Wetland Sediment	ASYTVPDGALKGIEVGAYYTGNDAKSRFYTDLTGYDTSKDRGVVYVKKTF
Ga0209069_101497051	3300027915	Watersheds	VPDGLFKNVEVGAYYTGNTANAGYYTDLTGYNTAKDAGIVYVKKTF
Ga0209391_100318323	3300027975	Freshwater Sediment	VAEGAFKGVEVGAYYSGNNAKKAFYTGLTGYNIAKDVGVVFIKKTS
Ga0209391_101456863	3300027975	Freshwater Sediment	GAEIGAYYSGNNATEAFYTDLNGYNTAKDRGVFYIKKTF
Ga0268264_101373521	3300028381	Switchgrass Rhizosphere	VMKGLEVGAYYTGNNAKSLPYTDLTNYDTSKDRGVLYVKKTF
Ga0268264_107893011	3300028381	Switchgrass Rhizosphere	KNVEIGAYYTGNTANEGFYTDLTGYNTAKDAGIVYVKKTF
Ga0302254_100539011	3300028870	Fen	VEIGAYYTGNTANSGFYTDLTGYNTAKDAGIVYVKKTF
(restricted) Ga0255310_101539993	3300031197	Sandy Soil	YTIPDGVLKGLEVGAYYTGNDAKSAPYTDLTGYDTSKDRGVVYVKKTF
Ga0307408_1024525682	3300031548	Rhizosphere	EVGAYYSGNDAKRAFYTDITGYDTSKDRGVVYVKKTF
Ga0307469_106418131	3300031720	Hardwood Forest Soil	WKAGVSYTVPDGVLKGVEFGAYYSGNNANSSFYTDLNNYDTAKDRGVFYVKKTF
Ga0307410_101525001	3300031852	Rhizosphere	VGAYYSGNDAKRAFYTDFTGYDTSKDRGVVYVKKTF
Ga0307410_118339161	3300031852	Rhizosphere	AKGLELGAYYTGNNATRPFYTDLTGYDTSKARIVGYVKKTF
Ga0306925_102714931	3300031890	Soil	VLKGIEFGAYYTGNDAKSAFYTDLSGYNTARDRGVVYVKKTF
Ga0318559_105913101	3300032039	Soil	VSYVVPDGVLKGIEFGAYYTGNDAKSAFYTDLSGYNTARDRGVVYVKKTF
Ga0318514_108005461	3300032066	Soil	VSYTAPDGFFKNFEVGAYYTGSDAKSRFYTDLTGRDTSKDRGVIYVKKTF
Ga0307415_1012645961	3300032126	Rhizosphere	LGAYYTGNNATRPFYTDLTGYDTSKARIVGYVKKTF
Ga0315281_120417251	3300032163	Sediment	KGVEVGAYYSGNNAKKAFYTDLTGYNTAKDVGVVYVKKTF
Ga0315283_116294241	3300032164	Sediment	LKNLEIGAYYTGNTANAGFYTDLTGYNTAKDTGVVYVKKTF
Ga0315283_118992001	3300032164	Sediment	FKGVEVGAYYSGNNAKKAFYTDLTGYNTAKDVGVVYVKKTF
Ga0307471_1023128771	3300032180	Hardwood Forest Soil	VEIGAYYTGNTANQGFYTDLTGYNTAKDAGIVYIKKTF
Ga0315287_111076203	3300032397	Sediment	EVGAYYSGNNAKKAFYTDLTGYNTAKDVGVVYVKKTF
Ga0315273_113731813	3300032516	Sediment	FKGVEVGAYYSGNNAKKAFYTDLTGYNTAKDTGVVYVKKTF
Ga0316605_111500051	3300033408	Soil	SSPHCSGTRAASYTVPDGVLKGVEFGAYYSGNNAESAFYTDPAGYNTGKEIGVVYVKKTF
Ga0310810_111148193	3300033412	Soil	GASYTIPDGVLKGLELGAYYTGNNAKSLPYTDLTNYDTSKDRGVFYVKKTF
Ga0316603_102416681	3300033413	Soil	VPDGVLKGVEFGAYYSGNNAESAFYTDPTGYNTGKEIGVVYVKKTF
Ga0316603_123049962	3300033413	Soil	VPDGLFKGLEIGAYYSDTNSDGGFYTDLTGKDTAKSTGVVYVKKTF
Ga0316625_1014918993	3300033418	Soil	EIGAYYTGNTAKSAFYTDLTGYDTGKDRGVVYVKKTF
Ga0326726_121101652	3300033433	Peat Soil	AVADGPLKGFEVGAYYVGNTANKVFYTDLTGYNTAKDTGVVYVKKTF
Ga0316621_106767221	3300033488	Soil	MKGVEVGAYYSGNNAKEGFYTDLTGYNTAKDRGVVYMKKTF
Ga0364943_0017225_1_120	3300034354	Sediment	GFEVGAYYTGNNAKSAFYTDLTGRDTAKDRGVVYVKKTF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters