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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F105288 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 100 |
| Average Sequence Length | 54 residues |
| Representative Sequence | ADQAQALVDGFHVAYVGSAILVAVAAVLLAVLLRREDVVAVGEGAAAPVPA |
| Number of Associated Samples | 91 |
| Number of Associated Scaffolds | 100 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 0.00 % |
| % of genes near scaffold ends (potentially truncated) | 0.00 % |
| % of genes from short scaffolds (< 2000 bps) | 0.00 % |
| Associated GOLD sequencing projects | 89 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.57 |
| Hidden Markov Model |
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| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (100.000 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (24.000 % of family members) |
| Environment Ontology (ENVO) | Unclassified (37.000 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (46.000 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Transmembrane (alpha-helical) | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 41.77% β-sheet: 0.00% Coil/Unstructured: 58.23% | Feature Viewer |
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| Powered by Feature Viewer | |||||
| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.57 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 100 Family Scaffolds |
|---|---|---|
| PF01699 | Na_Ca_ex | 37.00 |
| PF04237 | YjbR | 15.00 |
| PF00155 | Aminotran_1_2 | 6.00 |
| PF02417 | Chromate_transp | 5.00 |
| PF00480 | ROK | 4.00 |
| PF04828 | GFA | 3.00 |
| PF13302 | Acetyltransf_3 | 2.00 |
| PF00583 | Acetyltransf_1 | 2.00 |
| PF04248 | NTP_transf_9 | 2.00 |
| PF01594 | AI-2E_transport | 2.00 |
| PF00450 | Peptidase_S10 | 1.00 |
| PF01327 | Pep_deformylase | 1.00 |
| PF00196 | GerE | 1.00 |
| PF12697 | Abhydrolase_6 | 1.00 |
| PF09362 | DUF1996 | 1.00 |
| PF10604 | Polyketide_cyc2 | 1.00 |
| PF00107 | ADH_zinc_N | 1.00 |
| COG ID | Name | Functional Category | % Frequency in 100 Family Scaffolds |
|---|---|---|---|
| COG0387 | Cation (Ca2+/Na+/K+)/H+ antiporter ChaA | Inorganic ion transport and metabolism [P] | 37.00 |
| COG0530 | Ca2+/Na+ antiporter | Inorganic ion transport and metabolism [P] | 37.00 |
| COG2315 | Predicted DNA-binding protein with ‘double-wing’ structural motif, MmcQ/YjbR family | Transcription [K] | 15.00 |
| COG1940 | Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain | Transcription [K] | 8.00 |
| COG2059 | Chromate transport protein ChrA | Inorganic ion transport and metabolism [P] | 5.00 |
| COG3791 | Uncharacterized conserved protein | Function unknown [S] | 3.00 |
| COG0628 | Predicted PurR-regulated permease PerM | General function prediction only [R] | 2.00 |
| COG2343 | Uncharacterized conserved protein, DUF427 family | Function unknown [S] | 2.00 |
| COG0242 | Peptide deformylase | Translation, ribosomal structure and biogenesis [J] | 1.00 |
| COG2939 | Carboxypeptidase C (cathepsin A) | Amino acid transport and metabolism [E] | 1.00 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 100.00 % |
| Visualization |
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| Scaffold | Taxonomy | Length | IMG/M Link |
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| Habitat | Taxonomy | Distribution |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 24.00% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil | 5.00% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil | 5.00% |
| Natural And Restored Wetlands | Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands | 4.00% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil | 4.00% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere | 4.00% |
| Switchgrass Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere | 3.00% |
| Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere | 3.00% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere | 3.00% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere | 3.00% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere | 3.00% |
| Populus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere | 3.00% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere | 3.00% |
| Terrestrial Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil | 2.00% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere | 2.00% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 2.00% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 2.00% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 2.00% |
| Wetland Sediment | Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment | 1.00% |
| Freshwater Wetlands | Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands | 1.00% |
| Polar Desert Sand | Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand | 1.00% |
| Groundwater Sediment | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment | 1.00% |
| Watersheds | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds | 1.00% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 1.00% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil | 1.00% |
| Agricultural Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil | 1.00% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 1.00% |
| Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil | 1.00% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere | 1.00% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 1.00% |
| Natural And Restored Wetlands | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands | 1.00% |
| Corn Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere | 1.00% |
| Soil | Environmental → Terrestrial → Soil → Loam → Unclassified → Soil | 1.00% |
| Fen | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen | 1.00% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 1.00% |
| Arabidopsis Thaliana Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere | 1.00% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere | 1.00% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere | 1.00% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere | 1.00% |
| Rhizosphere Soil | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil | 1.00% |
| Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere | 1.00% |
| Visualization |
|---|
| Powered by ApexCharts |
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300000858 | Soil microbial communities from Great Prairies - Wisconsin Native Prairie soil | Environmental | Open in IMG/M |
| 3300001991 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2 | Host-Associated | Open in IMG/M |
| 3300002124 | Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_3 | Environmental | Open in IMG/M |
| 3300002155 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX- M7 | Host-Associated | Open in IMG/M |
| 3300002459 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6 | Host-Associated | Open in IMG/M |
| 3300003987 | Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D2 | Environmental | Open in IMG/M |
| 3300003996 | Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D2 | Environmental | Open in IMG/M |
| 3300004013 | Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D2 | Environmental | Open in IMG/M |
| 3300004463 | Combined assembly of Arabidopsis thaliana microbial communities | Host-Associated | Open in IMG/M |
| 3300004778 | Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare3Fresh | Environmental | Open in IMG/M |
| 3300005093 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks | Environmental | Open in IMG/M |
| 3300005328 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG | Host-Associated | Open in IMG/M |
| 3300005334 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 | Host-Associated | Open in IMG/M |
| 3300005337 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG | Environmental | Open in IMG/M |
| 3300005347 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG | Host-Associated | Open in IMG/M |
| 3300005354 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG | Host-Associated | Open in IMG/M |
| 3300005356 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG | Host-Associated | Open in IMG/M |
| 3300005364 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG | Host-Associated | Open in IMG/M |
| 3300005365 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG | Environmental | Open in IMG/M |
| 3300005441 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG | Environmental | Open in IMG/M |
| 3300005459 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 | Host-Associated | Open in IMG/M |
| 3300005468 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG | Environmental | Open in IMG/M |
| 3300005544 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG | Environmental | Open in IMG/M |
| 3300005563 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 | Host-Associated | Open in IMG/M |
| 3300005842 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 | Host-Associated | Open in IMG/M |
| 3300006047 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 | Environmental | Open in IMG/M |
| 3300006058 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 | Host-Associated | Open in IMG/M |
| 3300006358 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 | Host-Associated | Open in IMG/M |
| 3300006845 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 | Host-Associated | Open in IMG/M |
| 3300006876 | Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200 | Environmental | Open in IMG/M |
| 3300009091 | Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300009137 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158 | Environmental | Open in IMG/M |
| 3300009162 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2 | Host-Associated | Open in IMG/M |
| 3300010375 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG | Host-Associated | Open in IMG/M |
| 3300010401 | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1 | Environmental | Open in IMG/M |
| 3300010403 | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3 | Environmental | Open in IMG/M |
| 3300012186 | Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ416 (21.06) | Environmental | Open in IMG/M |
| 3300012914 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2 | Environmental | Open in IMG/M |
| 3300012915 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2 | Environmental | Open in IMG/M |
| 3300012985 | Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG | Environmental | Open in IMG/M |
| 3300013297 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG | Host-Associated | Open in IMG/M |
| 3300014254 | Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailB_D2 | Environmental | Open in IMG/M |
| 3300014745 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG | Host-Associated | Open in IMG/M |
| 3300014968 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG | Host-Associated | Open in IMG/M |
| 3300015077 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2) | Environmental | Open in IMG/M |
| 3300015201 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2) | Environmental | Open in IMG/M |
| 3300015372 | Soil combined assembly | Host-Associated | Open in IMG/M |
| 3300015373 | Combined assembly of cpr5 rhizosphere | Host-Associated | Open in IMG/M |
| 3300018077 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b1 | Environmental | Open in IMG/M |
| 3300018432 | Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T | Environmental | Open in IMG/M |
| 3300018469 | Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T | Environmental | Open in IMG/M |
| 3300018481 | Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T | Environmental | Open in IMG/M |
| 3300019361 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2) | Environmental | Open in IMG/M |
| 3300019767 | Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T | Environmental | Open in IMG/M |
| 3300020070 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300020081 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300022883 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S066-202C-4 | Environmental | Open in IMG/M |
| 3300022893 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S126-311R-4 | Environmental | Open in IMG/M |
| 3300022899 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S016-104C-6 | Environmental | Open in IMG/M |
| 3300023266 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S220-509R-4 | Environmental | Open in IMG/M |
| 3300024055 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S046-202B-6 | Environmental | Open in IMG/M |
| 3300025791 | Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D2 (SPAdes) | Environmental | Open in IMG/M |
| 3300025899 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025930 | Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) | Environmental | Open in IMG/M |
| 3300025936 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025940 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025960 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026041 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026116 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026121 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300027523 | Soil and rhizosphere microbial communities from Laval, Canada - mgHPA (SPAdes) | Environmental | Open in IMG/M |
| 3300028717 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158 | Environmental | Open in IMG/M |
| 3300028720 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357 | Environmental | Open in IMG/M |
| 3300028755 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356 | Environmental | Open in IMG/M |
| 3300028793 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159 | Environmental | Open in IMG/M |
| 3300028810 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_151 | Environmental | Open in IMG/M |
| 3300028812 | Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48 | Environmental | Open in IMG/M |
| 3300028814 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183 | Environmental | Open in IMG/M |
| 3300028875 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143 | Environmental | Open in IMG/M |
| 3300028876 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140 | Environmental | Open in IMG/M |
| 3300028885 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185 | Environmental | Open in IMG/M |
| 3300030336 | Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1 | Environmental | Open in IMG/M |
| 3300030943 | III_Fen_N2 coassembly | Environmental | Open in IMG/M |
| 3300031228 | Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT153D57 | Environmental | Open in IMG/M |
| 3300031229 | Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38 | Environmental | Open in IMG/M |
| 3300031716 | Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3 | Environmental | Open in IMG/M |
| 3300031854 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1 | Environmental | Open in IMG/M |
| 3300031890 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2) | Environmental | Open in IMG/M |
| 3300033475 | Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC | Environmental | Open in IMG/M |
| 3300033550 | Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4 | Environmental | Open in IMG/M |
| 3300034819 | Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_1 | Host-Associated | Open in IMG/M |
| Geographical Distribution | |
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| Protein ID | Sample Taxon ID | Habitat | Sequence |
| JGI10213J12805_112971642 | 3300000858 | Soil | PQPADQAQALVDGFHVAYLGSALMIAAGFVALLFLLRREDVVAVGEGEAAIGTATG* |
| JGI24743J22301_100886402 | 3300001991 | Corn, Switchgrass And Miscanthus Rhizosphere | HVAYVGSAILVAVAAVLLAVLLRREDVVAVGEGAAAPVPV* |
| C687J26631_100433693 | 3300002124 | Soil | GFHVAYFGSSALIAVGAVLLAFLLRRRDVEVVAVGERELATEPSPA* |
| JGI24033J26618_10398071 | 3300002155 | Corn, Switchgrass And Miscanthus Rhizosphere | VGSAILVAVAAVLLAVLLRREDVVAVGEGXAAPXPV* |
| JGI24751J29686_100071415 | 3300002459 | Corn, Switchgrass And Miscanthus Rhizosphere | SKTDDTLSGLGRAPRPADQAQALVDGFHVAYVGSAILVAVAAVLLAVLLRREDVVAVGEGXAAPIPV* |
| Ga0055471_100583421 | 3300003987 | Natural And Restored Wetlands | KTEDTLSALGREPNPADQAQALVDGFHIAYIGSASFVASGAIMLALLLRRSDVVAVGEGEAAPVPV* |
| Ga0055467_102035052 | 3300003996 | Natural And Restored Wetlands | ATTDSLSGLGREPQPADQAQALVDGFHVAYLGSAGLILVGAVLLGVLLRRRDVEAVAVGEPAAAAV* |
| Ga0055465_101240491 | 3300004013 | Natural And Restored Wetlands | VSGFHVAWALSATFLVVAAVLLALLLRRRDVIAVSQGEAAPVAV* |
| Ga0063356_1019679121 | 3300004463 | Arabidopsis Thaliana Rhizosphere | EAQQAQALVDGFHVAWLGSALLLALGAVLLFALLRRRDVVAVAEGEIAPVAA* |
| Ga0062383_106573632 | 3300004778 | Wetland Sediment | TSQALVDGFHVAYVGSALLLGAAALLLILLLRRRDVHAVSAADVVPAVE* |
| Ga0062594_1021114351 | 3300005093 | Soil | GFHVAYIGSAALVAVAAVLLAVLLRREDVVAVGEGAAAPVAA* |
| Ga0070676_105254241 | 3300005328 | Miscanthus Rhizosphere | ADQAQALVDGFHVAYIGSAILIAVALVLLAVLLRRSDVVAVGEGVAEPVAV* |
| Ga0068869_1008554721 | 3300005334 | Miscanthus Rhizosphere | ADQAQALVDGFHVAYVGSAILVAVAAVLLAVLLRREDVVAVGEGVAAPIPV* |
| Ga0070682_1009088902 | 3300005337 | Corn Rhizosphere | QSQALVDGFHVAWLGSALLLALGAVLLFALLRRRDVIAVSEGEVAPAAA* |
| Ga0070668_1013543501 | 3300005347 | Switchgrass Rhizosphere | APTEAEQSQALVDGFHVAWLGSALLLALGAVLLFALLRRRDVIAISEGEVAPAAA* |
| Ga0070675_1021539551 | 3300005354 | Miscanthus Rhizosphere | ADQAQALVDGFHVAYIGSAALVAVALVLLAVLLRRSDVVAVGEGVAEPVAV* |
| Ga0070674_1014804861 | 3300005356 | Miscanthus Rhizosphere | ETAQALVDGFHIAWIGCAAFLAAGAVLLFALLRRGDVVAAAHGEGAPVVT* |
| Ga0070673_1019714602 | 3300005364 | Switchgrass Rhizosphere | NGFHVAYVGSAILVASAAVLLAVLLRRSDVVAVGEGEAAPVAA* |
| Ga0070688_1000225115 | 3300005365 | Switchgrass Rhizosphere | DDTLSGLGRAPRPAEQAQALVDGFHVAYVGSAILVAVAAVLLAVLLRREDVVAVGEGVAAPIPV* |
| Ga0070700_1000279305 | 3300005441 | Corn, Switchgrass And Miscanthus Rhizosphere | DQAQALVDGFHVAYVGSAILVAVAAVLLAVLLRREDVVAVGEGAAAPVPV* |
| Ga0068867_1011150872 | 3300005459 | Miscanthus Rhizosphere | GFHVAYVGSAILVASAAVLLAVLLRRSDVVAVGEGEAAPVAA* |
| Ga0070707_1009250191 | 3300005468 | Corn, Switchgrass And Miscanthus Rhizosphere | QSQALVDGFHVAWLGSALLLALGAVLLLALLRRRDVVAISEGEVAPAAA* |
| Ga0070686_1009258412 | 3300005544 | Switchgrass Rhizosphere | AQALVDGFHVAYVGSAILVAVAAVLLAVLLRREDVVAVGEGAAAPIPV* |
| Ga0068855_1023189252 | 3300005563 | Corn Rhizosphere | SKTDDTLSGLGRAPRPADQAQALVDGFHVAYVGSAILVAVAAVLLAVLLRREDVVAVGEGAAAPIPV* |
| Ga0068858_1001139335 | 3300005842 | Switchgrass Rhizosphere | LSTFAVSKTDDTLSGLGRAPRPAEQAQALVDGFHVAYVGSAILVAVAAVLLAVLLRREDVVAVGEGVAAPIPV* |
| Ga0075024_1008739662 | 3300006047 | Watersheds | LVDGFHVAYLGSAVLLGAAAVLMLVMLRRSDVAAVSGGEQLASVPA* |
| Ga0075432_102394401 | 3300006058 | Populus Rhizosphere | APTQADQAEALVSGFHVAWALSATFLAVAAVLLAVLLRRRDVIAVSEGEAAPVVA* |
| Ga0068871_1001819391 | 3300006358 | Miscanthus Rhizosphere | ADQAQALVDGFHVAYVGSAILVAVAAVLLAVLLRREDVVAVGEGAAAPVPV* |
| Ga0075421_1024568681 | 3300006845 | Populus Rhizosphere | AILSTFAVSKTEDSLSGLGREPGPADQAQALVDGFHVAYIGSAALVAVAAVLLAVLLRREDVVAVGEGAAATVTA* |
| Ga0079217_114754781 | 3300006876 | Agricultural Soil | LGLAILATLSVDATQETLSGLGRAPQPADEAQALVDGFHVAYLGSAALVAGGFVALLFLLSRRDVVAVGEGETAPEPAPG* |
| Ga0102851_127133891 | 3300009091 | Freshwater Wetlands | ILSTFAVSKTQDVLASAGAEPSPADQAQALVDGFHVAYVGSAILIAIGWLALFLLLKREDVVVVAEGEAAAAAEGAPA* |
| Ga0066709_1027377691 | 3300009137 | Grasslands Soil | CQALVEGFLVGFLGSAVFVAAGAVLLAVLLRRQDVVAVSEGVAEPASA* |
| Ga0075423_102359861 | 3300009162 | Populus Rhizosphere | QAEALVSGFHVAWALSATFLAVAAVLLAVLLRRRDVIAVSEGEAAPVVA* |
| Ga0105239_114829321 | 3300010375 | Corn Rhizosphere | QSQALVDGFHVAWLGSALLLALGAVLLFALLRRRDVVAISKGEVAPAAA* |
| Ga0105239_128444511 | 3300010375 | Corn Rhizosphere | TFAVSKTNATLTDLGRAPQPADEAQALVNGFHVAYVGSAILVAVAAVLLAVLLRREDVVAVGEGVAAPIPV* |
| Ga0134121_111360852 | 3300010401 | Terrestrial Soil | VAYVGSAILVAVAAVLLAVLLRREDVVAVGEGAAAPIPV* |
| Ga0134123_111127392 | 3300010403 | Terrestrial Soil | PADQAQALVDGFHVAYVGSAILVAVAAVLLAVLLRREDVVAVGEGAAAPVPV* |
| Ga0136620_102537322 | 3300012186 | Polar Desert Sand | VAYLGSALLMAAAAVLLFSLLRREDVVAVGEGEAVPAHAV* |
| Ga0157297_105178141 | 3300012914 | Soil | PPTEAQQAQALVDGFHVAWLGSALLLALGAVLLFALLRRRDVVAVAEGEVAPVAA* |
| Ga0157302_101745132 | 3300012915 | Soil | VSKTDDSLSGLGRAPRPADQAQALVDGFHVAYVGSAILVAVAAVLLAVLLRREDVVAVGEGAAAPVPV* |
| Ga0164308_116777503 | 3300012985 | Soil | DHQPTPADQANALVDGFHVAWLGSAMLLALAAVLLFVLLRRSDVVAVAEGEVAPVAA* |
| Ga0157378_103738233 | 3300013297 | Miscanthus Rhizosphere | ADQAQALVDGFHVAYVGSAILVAVAAVLLAVLLRREDVVAVGEGAAAPIPV* |
| Ga0075312_10725651 | 3300014254 | Natural And Restored Wetlands | VNATTDSLSGLGREPQPADQAQALVDGFHVAYLGSAGLILVGAVLLGVLLRRRDVEAVAVGEPAAAAV* |
| Ga0157377_105411242 | 3300014745 | Miscanthus Rhizosphere | EAETAQALVDGFHIAWIGCAAFLAAGAVLLFALLRRGDVVAAAHGEGAPVVT* |
| Ga0157379_118342262 | 3300014968 | Switchgrass Rhizosphere | DQAQALVDGFHVAYVGSAILVAVAAVLLAVLLRREDVVAVGEGAAAPIPV* |
| Ga0173483_109357822 | 3300015077 | Soil | LGRAPRPADQAQALVDGFHVAYVGSAILVAVAAVLLAVLLRREDVVAVGEGAAAPVPV* |
| Ga0173478_101316424 | 3300015201 | Soil | QALVDGFHVAWLGSALLLALGAVLLFALLRRRDVVAVAEGEAAPVAA* |
| Ga0132256_1028458111 | 3300015372 | Arabidopsis Rhizosphere | VDGFHVAFVGSAVFVAAGAVLLAVLLRRRDVVAVGEGAAAAAQV* |
| Ga0132257_1003548431 | 3300015373 | Arabidopsis Rhizosphere | VGSAILVASAAVLLAVLLRRSDVVAVGEGEAAPVAA* |
| Ga0132257_1008740782 | 3300015373 | Arabidopsis Rhizosphere | SGFHVAWALSAMFLVVAAVLLAALLSRRDVLAAGQGEAAPAVA* |
| Ga0132257_1032538821 | 3300015373 | Arabidopsis Rhizosphere | TAQALVDGFHIAWIGCAAFLAAGAVLLFALLRRGDVLAVAHGESAPVVT* |
| Ga0184633_105525622 | 3300018077 | Groundwater Sediment | QALVDGFHVAYLGSALLVAFAAALLLLLLRRQDAVAVHAGEPAPDPAPA |
| Ga0190275_126729122 | 3300018432 | Soil | LAILATLSVDATQETLSGLGRPPQPADEAQALVDGFHVAYLGSAALVAGGFFALLFLLSRRDVVAVGEGEPTAEPAAG |
| Ga0190275_128045632 | 3300018432 | Soil | QPTQEDEAQALVDGFHVAYLGSAVLIAVAAVFLFFLLKREDVAAVGAGEAALAPA |
| Ga0190270_101124381 | 3300018469 | Soil | ALVDGFHVAYLGSAALVAGGFVALLFLLSRRDVVAVGEGEAAPEPAPG |
| Ga0190271_101198984 | 3300018481 | Soil | ATQETLSGLGGAPQPADEAQALVDGFHVAYLGSAALVAGGFFALLFLLSRRDVVAVGEGEAAVGPAPG |
| Ga0173482_100882951 | 3300019361 | Soil | PADQAQALVDGFHVAYVGSAILVAVAAVLLAVLLRREDVVAVGEGTAAPVPV |
| Ga0190267_116272291 | 3300019767 | Soil | EEAQALVDGFHVAYLGSAALVAGGFFALLLLLSRRDVVAVGEGETALEPAAG |
| Ga0206356_113561541 | 3300020070 | Corn, Switchgrass And Miscanthus Rhizosphere | DQAEALVSGFHVAWALSATFLAVAAVLLAVLLRRRDVIAVSEGEAAPVVA |
| Ga0206354_111622021 | 3300020081 | Corn, Switchgrass And Miscanthus Rhizosphere | GFHVAWALSATFLAVAAVLLAVLLRRRDVIAVSEGEAAPVVA |
| Ga0247786_11332172 | 3300022883 | Soil | HVAYVGSAILVAVAAVLLAVLLRREDVVAVGEGTAAPVPA |
| Ga0247787_10387541 | 3300022893 | Soil | QAQALVDGFHVAYVGSAILVAVAAVLLAVLLRREDVVAVGEGTAAPVPA |
| Ga0247795_11056951 | 3300022899 | Soil | LSATFLAVAAVLLAVLLRRRDVIAVSEGEAAPVVA |
| Ga0247789_10701872 | 3300023266 | Soil | ADQAEALVSGFHVAWALSATFLAVAAVLLAVLLRRRDVIAVSEGEAAPVVA |
| Ga0247794_102046381 | 3300024055 | Soil | QAQALVDGFHVAYVGSAILVAVAAVLLAVLLRREDVVAVGEGVAAPIPV |
| Ga0210115_10854582 | 3300025791 | Natural And Restored Wetlands | REPNPADQAQALVDGFHIAYIGSASFVASGAIMLALLLRRSDVVAVGEGEAAPVPV |
| Ga0207642_110051481 | 3300025899 | Miscanthus Rhizosphere | ATLTDLGRAPQPADEAQALVNGFHVAYVGSAILVASAAVLLAVLLRRSDVVAVGEGEAAPVAA |
| Ga0207701_101799974 | 3300025930 | Corn, Switchgrass And Miscanthus Rhizosphere | GLGRAPRPADQAQALVDGFHVAYVGSAILVAVAAVLLAVLLRREDVVAVGEGTAAPVPA |
| Ga0207670_100457425 | 3300025936 | Switchgrass Rhizosphere | AEQAQALVDGFHVAYVGSAILVAVAAVLLAVLLRREDVVAVGEGAAAPIPV |
| Ga0207691_101901574 | 3300025940 | Miscanthus Rhizosphere | PTDADQAQALVDGFHVAWIGCAAFLAAGAVLLFVLLRRGDVLAAAHGEAEPVVT |
| Ga0207651_117832922 | 3300025960 | Switchgrass Rhizosphere | NGFHVAYVGSAILVASAAVLLAVLLRRSDVVAVGEGEAAPVAA |
| Ga0207639_108508062 | 3300026041 | Corn Rhizosphere | LVDGFHVAYVGSAILVAVAAVLLAVLLRREDVVAVGEGAAAPVPV |
| Ga0207674_112200102 | 3300026116 | Corn Rhizosphere | AEQSQALVDGFHVAWLGSALLLALGAVLLFALLRRRDVIAISEGEVAPAAA |
| Ga0207683_100565321 | 3300026121 | Miscanthus Rhizosphere | LGRKPGPADQAQALVDGFHVAYIGSAILIAVALVLLAVLLRRSDVVAVGEGVAEPVAV |
| Ga0208890_10054271 | 3300027523 | Soil | SGLGRAPGPADQAQALVDGFHVAYVGSALLVAVAAVLLALLLKRQDVVAVGEGEALPAPA |
| Ga0307298_100570062 | 3300028717 | Soil | TNLGRQPSEADQAQALVDGFHVAYLGSAVLIGVAFFALLFLLRRQDVVAVGEGELAASAG |
| Ga0307298_101133541 | 3300028717 | Soil | FAVSRTDNTLSGLGHAPGPADQAQALVDGFHVAYIGSAALVAVAAVLLALLLRRQDVVAVGEGVAVPAPA |
| Ga0307317_102117531 | 3300028720 | Soil | QPADQAQALVDGFHVAYLGSALLVAAAAILLALLLRREDVVAVGEGALAAEPSAA |
| Ga0307317_102962392 | 3300028720 | Soil | ATQNTLTDLGRQPTPANEAQALVDGFHVAYLGSAALIGVAFFALLFLLRRQDVVAVGEGEFATSAG |
| Ga0307316_101142671 | 3300028755 | Soil | TQNTLTDLGRQPTPANEAQALVDGFHVAYLGSAALIGVAFFAMLFLLRRQDVVAVGEGEFATSAG |
| Ga0307299_103566711 | 3300028793 | Soil | QALVDGFHVAYLGSAVLVGVAFFALLFLLRRQDVVAVGEGELATGSASA |
| Ga0307294_104325851 | 3300028810 | Soil | QTAQALVDGFHIAWIGCAAFLAAGAVLLFVLLRRGDVLAAAHGEAEPVVT |
| Ga0247825_110160831 | 3300028812 | Soil | TKAEQSQALVDGFHVAWLGSALLLGLAAVLLFVLLRRRDVVAVAEGQIAPVAA |
| Ga0307302_103163211 | 3300028814 | Soil | FHVAYAGSALLVAAGAVLLLLLLRREDVVAVGAGEPAAATA |
| Ga0307289_100538831 | 3300028875 | Soil | STFAVSRTDNTLSGLGQAPGPADQAQALVDGFHVAYIGSAALVAVAAVLLALLLRRQDVVAVGEGVAVPAPA |
| Ga0307286_101652591 | 3300028876 | Soil | LAVDATQNTLTDLGRQPSEADQAQALVDGFHVAYLGSAVLIGVAFFALLFLLRRQDVVAVGEGELAASAG |
| Ga0307304_100329131 | 3300028885 | Soil | NTLSGLGHAPGPADQAQALVDGFHVAYIGSAALVAVAAVLLALLLRRQDVVAVGEGVAVPAPA |
| Ga0247826_100820321 | 3300030336 | Soil | YVGSAILVAVAAVLLAVLLRREDVVAVGEGTAAPVPA |
| Ga0311366_112529671 | 3300030943 | Fen | GCAILLAAGAVLLLVMLRREDVVAVAHGEAETVIL |
| Ga0299914_104498413 | 3300031228 | Soil | TEDTLVDVGAAEPTPDQQAQALVDGFHVAYFGSAALIAVAAVLLFLLLSRRDVVAIGEGEPATVPV |
| Ga0299914_108841071 | 3300031228 | Soil | EPQPADQAQALVDGFHVAYIGSAGLILAAAVLLAILLRRRDVEAVAVGDPAAAVA |
| Ga0299914_110817673 | 3300031228 | Soil | QAQALVDGFHVAYLGSAVLIAVAAVFLFFLLRREDVAAVGAGEAALAQA |
| Ga0299913_100908721 | 3300031229 | Soil | GAAGPTPDQQAQALVDGFHVAYLGSAVLIAVAAVLLFLLLSRRDVVAVGEGEAATVPV |
| Ga0299913_102489441 | 3300031229 | Soil | ALVDGFHVAYFGSAALIAVAAVLLFLLLSRRDVVAIGEGEPATVPV |
| Ga0310813_101878061 | 3300031716 | Soil | SGLGRAPRPAEQAQALVDGFHVAYVGSAILVAVAAVLLAVLLRREDVVAVGEGAAAPVPV |
| Ga0310904_112737112 | 3300031854 | Soil | ADQAQALVDGFHVAYVGSAILVAVAAVLLAVLLRREDVVAVGEGAAAPVPA |
| Ga0306925_122702662 | 3300031890 | Soil | PPTGQALVDGFHVAFLGSAVAVAIGAVLLAVLLRRSDVVAVGEGVPEPSAAQA |
| Ga0310811_106785002 | 3300033475 | Soil | PRPAEQAQALVDGFHVAYVGSAILVAVAAVLLAVLLRREDVVAVGEGVAAPIPV |
| Ga0247829_102746021 | 3300033550 | Soil | LVDGFHVAYLGSAALVAGGFVALLFLLSRRDVVAVGEGETAPEPAPG |
| Ga0373958_0052893_698_862 | 3300034819 | Rhizosphere Soil | PTEAEQSQALVDGFHVAWLGSALLLALGAVLLLALLRRRDVVAISEGEVAPAAA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |