NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F105266

Metagenome / Metatranscriptome Family F105266

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F105266
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 65 residues
Representative Sequence LMLGAAAAITGTALLVYANRPECTTNQLAGGCGYGTKVVGGAVLSGGVVGLVIGALTWR
Number of Associated Samples 92
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 0.00 %
% of genes from short scaffolds (< 2000 bps) 0.00 %
Associated GOLD sequencing projects 85
AlphaFold2 3D model prediction Yes
3D model pTM-score0.53

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (100.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(8.000 % of family members)
Environment Ontology (ENVO) Unclassified
(42.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(46.000 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: Yes Secondary Structure distribution: α-helix: 47.13%    β-sheet: 0.00%    Coil/Unstructured: 52.87%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.53
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF00575S1 4.00
PF00082Peptidase_S8 3.00
PF06580His_kinase 2.00
PF01027Bax1-I 2.00
PF04020Phage_holin_4_2 1.00
PF00083Sugar_tr 1.00
PF00753Lactamase_B 1.00
PF02687FtsX 1.00
PF12704MacB_PCD 1.00
PF04519Bactofilin 1.00
PF00210Ferritin 1.00
PF00691OmpA 1.00
PF12543DUF3738 1.00
PF02630SCO1-SenC 1.00
PF12779WXXGXW 1.00
PF08308PEGA 1.00
PF07705CARDB 1.00
PF03060NMO 1.00
PF08239SH3_3 1.00
PF01979Amidohydro_1 1.00
PF00873ACR_tran 1.00
PF00106adh_short 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG2972Sensor histidine kinase YesMSignal transduction mechanisms [T] 2.00
COG3275Sensor histidine kinase, LytS/YehU familySignal transduction mechanisms [T] 2.00
COG0516IMP dehydrogenase/GMP reductaseNucleotide transport and metabolism [F] 1.00
COG1225PeroxiredoxinPosttranslational modification, protein turnover, chaperones [O] 1.00
COG1664Cytoskeletal protein CcmA, bactofilin familyCytoskeleton [Z] 1.00
COG1950Uncharacterized membrane protein YvlD, DUF360 familyFunction unknown [S] 1.00
COG1999Cytochrome oxidase Cu insertion factor, SCO1/SenC/PrrC familyPosttranslational modification, protein turnover, chaperones [O] 1.00
COG2070NAD(P)H-dependent flavin oxidoreductase YrpB, nitropropane dioxygenase familyGeneral function prediction only [R] 1.00


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Phylogeny

NCBI Taxonomy

NameRankTaxonomyDistribution
UnclassifiedrootN/A100.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil8.00%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere7.00%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere6.00%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil5.00%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil5.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil5.00%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds4.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil4.00%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil4.00%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere4.00%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere4.00%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere4.00%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil3.00%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil3.00%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere3.00%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere3.00%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil2.00%
Grass SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil2.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil2.00%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil2.00%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere2.00%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere2.00%
WatershedsEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds1.00%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil1.00%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil1.00%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil1.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil1.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Soil1.00%
Untreated Peat SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil1.00%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland1.00%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil1.00%
Groundwater SandEnvironmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand1.00%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere1.00%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.00%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere1.00%
Switchgrass RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere1.00%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere1.00%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere1.00%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2065487018Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
2140918008Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog_allEnvironmentalOpen in IMG/M
2170459003Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect MP BIO 1O1 lysis 0-21cmEnvironmentalOpen in IMG/M
2170459009Grass soil microbial communities from Rothamsted Park, UK - July 2009 indirect DNA Tissue lysis 0-10cmEnvironmentalOpen in IMG/M
3300004157Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2EnvironmentalOpen in IMG/M
3300005331Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaGHost-AssociatedOpen in IMG/M
3300005334Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2Host-AssociatedOpen in IMG/M
3300005335Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaGHost-AssociatedOpen in IMG/M
3300005338Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2Host-AssociatedOpen in IMG/M
3300005439Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaGEnvironmentalOpen in IMG/M
3300005444Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaGEnvironmentalOpen in IMG/M
3300005534Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1EnvironmentalOpen in IMG/M
3300005545Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaGEnvironmentalOpen in IMG/M
3300005546Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaGEnvironmentalOpen in IMG/M
3300005548Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaGHost-AssociatedOpen in IMG/M
3300005553Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144EnvironmentalOpen in IMG/M
3300005598Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155EnvironmentalOpen in IMG/M
3300005614Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2Host-AssociatedOpen in IMG/M
3300005617Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2Host-AssociatedOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005841Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2Host-AssociatedOpen in IMG/M
3300005842Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2Host-AssociatedOpen in IMG/M
3300005844Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2Host-AssociatedOpen in IMG/M
3300006028Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaGEnvironmentalOpen in IMG/M
3300006046Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101EnvironmentalOpen in IMG/M
3300006358Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2Host-AssociatedOpen in IMG/M
3300006800Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109EnvironmentalOpen in IMG/M
3300006903Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5Host-AssociatedOpen in IMG/M
3300009093Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaGHost-AssociatedOpen in IMG/M
3300009176Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaGHost-AssociatedOpen in IMG/M
3300009551Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaGHost-AssociatedOpen in IMG/M
3300009553Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaGHost-AssociatedOpen in IMG/M
3300009812Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_50_60EnvironmentalOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010379Sb_50d combined assemblyEnvironmentalOpen in IMG/M
3300011119Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaGHost-AssociatedOpen in IMG/M
3300011120Combined assembly of Microbial Forest Soil metaTEnvironmentalOpen in IMG/M
3300011271Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaGEnvironmentalOpen in IMG/M
3300011444Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT800_2EnvironmentalOpen in IMG/M
3300012357Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012582Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaGEnvironmentalOpen in IMG/M
3300012922Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaGEnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012948Tropical forest soil microbial communities from Panama - MetaG Plot_14EnvironmentalOpen in IMG/M
3300012960Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MGEnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300012989Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MGEnvironmentalOpen in IMG/M
3300013296Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaGHost-AssociatedOpen in IMG/M
3300013297Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaGHost-AssociatedOpen in IMG/M
3300013306Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaGHost-AssociatedOpen in IMG/M
3300014157Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300014325Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaGHost-AssociatedOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300016294Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178EnvironmentalOpen in IMG/M
3300016404Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082EnvironmentalOpen in IMG/M
3300017959Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MGEnvironmentalOpen in IMG/M
3300018482Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118EnvironmentalOpen in IMG/M
3300021178Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-MEnvironmentalOpen in IMG/M
3300021479Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-MEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300021858Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2015 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300022522Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022533Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300025898Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025911Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025912Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025916Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025924Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025925Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025934Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025941Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025944Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026023Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026095Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300027894Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)EnvironmentalOpen in IMG/M
3300027910Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)EnvironmentalOpen in IMG/M
3300027911Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)EnvironmentalOpen in IMG/M
3300027915Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)EnvironmentalOpen in IMG/M
3300027986Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300028380Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300030743Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VCO Co-assemblyEnvironmentalOpen in IMG/M
3300030904Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_202 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031668Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23EnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300032051Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032770Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5EnvironmentalOpen in IMG/M
3300033412Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NCEnvironmentalOpen in IMG/M
3300033486Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_N3_C1_D5_AEnvironmentalOpen in IMG/M
3300033513Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_CEnvironmentalOpen in IMG/M
3300034129Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_fen_01D_16EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
GPINP_004139302065487018SoilMAAMLIGAVASITGGALLIYANRPECNVNQFAGGCGYGTKVIGGAVLTGGLASLVVGALTWR
Bog_all_C_008414502140918008SoilMGRDGSIAAIMIGAVATITGAAILVYANRPDCNTNQFAGGCGYGTKVIGGAVLSGGIVGLVVGALTWR
E4A_114117502170459003Grass SoilMGRSRSIAALTLGTIAAITGGAILVYANRPECSSTNQSAGGCGYGTKVIGGAVLTGGVAGLVIGALTWQ
F47_094192402170459009Grass SoilRGGFRRGRSRNSGQVAAIFLGAVGAIAGAAVLVYANRPECNAQPALGGCGYGTKVAGGAVLSAGLVGMTIGALTWR
Ga0062590_10293729013300004157SoilYHVRHDGSIAALMIGAAAAITGTAVLVYANRPECTFAPYAGGCGYGTKVVGGAVLAGGVVGLFVGALTW*
Ga0070670_10155024113300005331Switchgrass RhizosphereAGSLAQRRGYRGRGSGRNDGARAAIFLGAVGVIAGTAVMVYANRPECSVSARANGCGYGTKVAGSAVLSAGLVGLLVGALTWR*
Ga0068869_10059727123300005334Miscanthus RhizosphereGHSGSAAAMVLGAGAAIAGAAVLVYANRPDCRPSQTTNGCGYGTKVIGGAVLSAGVVGLVAGALTW*
Ga0070666_1144422213300005335Switchgrass RhizosphereGAIAGTGVLIYANRPECNVNSNLGGCGYGTRVVGGSVLAGGLVGLMVGAVMWR*
Ga0068868_10046969513300005338Miscanthus RhizosphereAALTAIMLGAVGAIAGTAVLVYANRPDCNVNPNLGGCGYGTRVVGASVLSGGIVGLMVGAVMWR*
Ga0070711_10061168013300005439Corn, Switchgrass And Miscanthus RhizosphereSIAALMLGSIAAIAGTAVLVYANRPECTTNQFAGGCGYGTKVVGGAVLSGGVVGLVIGALTWR*
Ga0070694_10088595923300005444Corn, Switchgrass And Miscanthus RhizosphereSAAAMVLGAGAAIAGAAVLVYANRPDCRPSQTTNGCGYGTKVIGGAVLSAGVVGLVAGALTW*
Ga0070735_1018783943300005534Surface SoilFLGAAGAIAGTATLLYANRPECGFSPNAGGCGYGTKVVGGSVLAAGVVGLVVGAALWR*
Ga0070735_1040094633300005534Surface SoilGGYRGEHDGAAAAIIIGAAAVIAGSAILVYANRPDCSVNQLAGGCGYGTKVVGGAVLSAGIVGVLVGAATWR*
Ga0070695_10139569223300005545Corn, Switchgrass And Miscanthus RhizosphereMVLGAGAAIAGAAVLVYANRPDCRPSQTTNGCGYGTKVIGGAVLSAGVVGLVAGALTW*
Ga0070696_10127214723300005546Corn, Switchgrass And Miscanthus RhizosphereADSLALGRRYGRWRGRNGAATAAVVLGAAASITGAALLVYANRPECRANDLASGCGYGTKVVGGAVLSGGLVSLVVGAVTWRR*
Ga0070665_10208293813300005548Switchgrass RhizosphereGAVASITGAAILVYANRPECRSRPSATGCGYGTKVVGGAVLSGGVVGLTIGALTWR*
Ga0066695_1078199613300005553SoilLGAIGTIAGAAVLVYAGRPECSANPNLGGCGYGTKVVGGAVLTAGLVGLMVGALTWR*
Ga0066706_1147621213300005598SoilGGRNDGAATALFLGAVGTIAGAAILVYANRPECSVNAREGGCGYGTKVVGGAVLSAGLVGLMVGAVTWR*
Ga0068856_10221445613300005614Corn RhizosphereASIAGAAVLVYANRPECSTNQAASGCGYGTKVVGGAVLSTGIVGLVVGAVTWR*
Ga0068859_10222921613300005617Switchgrass RhizosphereDDAGSLAQRRGYRGRGSGRNDGARAAIFLGAVGVIAGTAVMVYANRPECSVSPRANGCGYGTKVAGSAVLSAGLVGLLVGALTWR*
Ga0066903_10018827713300005764Tropical Forest SoilNGSIAALLIGTAATITGAAILIYANRPECSTNQFAGACGYGTKVIGGSVLTGGVVGLMVGALTWK*
Ga0066903_10756079123300005764Tropical Forest SoilSAATITGTALLFYANRPECGVEPRAGGCGYGAKVIGGSVLTGGVASLLVGALTWR*
Ga0068863_10112754423300005841Switchgrass RhizosphereAAILVYANRPECSTNPYRADGCGYGTKVVGGAALGLGVMGFTIAAITW*
Ga0068858_10225609123300005842Switchgrass RhizosphereRPRGGGSGGNRDAAAAAIAVGAVATIVGAAILVYGNRPECTTNQRAGGCGYGTHVIGGAVLSAGVVGLVIGSLTW*
Ga0068862_10125892323300005844Switchgrass RhizosphereRGYRGRGSGRNDVARASILLGAVATITGTAVLVYANRPECSVNARETGCGYGTKVAGGAVLSAGLVGLLVGALTWR*
Ga0070717_1167755623300006028Corn, Switchgrass And Miscanthus RhizosphereLVYANRPECSVSANNDLCGYGTKVVGGTLISAGLVSLLVGAVTWR*
Ga0066652_10082907713300006046SoilANRPDCSTNPNLGGCGYGTKVVGGAVLTAGLVGILTGALLWR*
Ga0068871_10222741113300006358Miscanthus RhizosphereSVTGAAILVYANRPECSTNPYRADGCGYGTKVVGGAALGLGVMGFTIAAITW*
Ga0066660_1133710613300006800SoilASAGQVYPGRPYRMRRDGSIAAIMIGAAAAITGTAVLVYANRPERATNQFAGGCGYGTKVIGTSVLAGGIVGLFVGALTRQ*
Ga0075426_1025212823300006903Populus RhizosphereQYGRRGFGRRRNGAAAALIALGAVASITGGAVLVYANRPECSTNQFAGGCGYGTKVVGGAVLSAGIVGMVAGALAWR*
Ga0105240_1077857913300009093Corn RhizosphereASIAGAAILVYANRPDCGPHPDAGGCGYGTKVVGGAVLSVGVVSMLVGALTYR*
Ga0105242_1116284533300009176Miscanthus RhizosphereSITGTAILVYAHRPDCRYHEFASGCGYGTKVVGGAVVAGGVVGLVVGALTW*
Ga0105238_1111467613300009551Corn RhizosphereLLVQLRDIQLADQVLRGRGRRDNDGARAAIILGAVATIAGTAVLVYANRPDCSTNPTAGGCGYGTKVVGGALLTAGVVSLLVGALTWR*
Ga0105249_1306317523300009553Switchgrass RhizosphereGQIIQGQPYPYPYPPAYHVRHDGSIAALMIGAAAAITGTAVLVYANRPECTFAPYAGGCGYGTKVVGGAVLAGGVVGLFVGALTW*
Ga0105067_108622423300009812Groundwater SandGGRNRAAQAEIIVGAIGSITGGALLVYANRPECRANQLASGCGYGTKVIGGAVLAAGVVGLVVGALTWR*
Ga0126376_1074820523300010359Tropical Forest SoilMFVGAAAAIVGTALLVYANRPECNIAPTAGGCGYGAKVVGGAVLSGGIAGLAIGALTWR*
Ga0136449_10380851013300010379Peatlands SoilRPYIIGRDRSIAAIMIGAVASITGAAVLVYANRPDCDTNQFAGGCGYGTKVVGGAVLSGGLVSLIVGALTWR*
Ga0105246_1073475423300011119Miscanthus RhizosphereMVLGAGAAIAGAAVLVYANRPECRPSQTTNGCGYGTKVIGGAVLSAGVVGLV
Ga0150983_1437790233300011120Forest SoilSIAAIMIGATAAIAGAALLVYANRPECVTDTVAGGCGYGTKVAGTAFLSGGIVGLLVGALTWR*
Ga0137393_1013043223300011271Vadose Zone SoilVAALMIGAVATITGAAILVYAHRPECETQQFAGGCGYGTRVIGGAVLSGGIAGLFVGALTWR*
Ga0137463_133437713300011444SoilGYRGRGRGGRNGASTAIVLGAVASIAGAAVLVYANRPECSTNHSASGCGYGTKVVGGAVLSAGIVGLVAGSLTWR*
Ga0137384_1121292123300012357Vadose Zone SoilMGRSGSITALLIGAAAAITGAAVLVYANRPECSTNQFAGGCGYGTKVIGGAVLAGGAVGLVIGAVTWR*
Ga0137358_1106502413300012582Vadose Zone SoilAFGQWGGSRRGRGRNSGAATAIFLGAAGTIAGAAVLVYANRPECSGNPTLGGCGYGTKVVGGAVLSAGLVGLMIGALTWR*
Ga0137394_1136823223300012922Vadose Zone SoilMIGAAAAITGAAILVYANRPECSTNQFAGGCGYGTKVIGGAVLSGGAVGLVIGAVTWR*
Ga0137407_1119880913300012930Vadose Zone SoilGAIASITGAAILVYANRPECSAHQFANGCGYGTKVVGGAVLSGGIVGLVVGALTWR*
Ga0126375_1104755513300012948Tropical Forest SoilIGAAAAIAGTALLVYANRPECSAIPTAGGCGYGSKVLGGAVLSAGVVGVTVGALTWR*
Ga0164301_1055564213300012960SoilRGRNGGAQAAVILGAVASIAGAALLAYANRPECSANQRADGCGYGTKVIGGAVLGGGLVSLAVGALTWR*
Ga0126369_1147042813300012971Tropical Forest SoilYPYPYPAYPSHHHHDGSIAAIMIGAAAAITGTAVLVYANRPECTFAPYAGGCGYGTKVVGGAVLAGGVVGLFVGALTW*
Ga0164305_1055813123300012989SoilMFVGAAAAIAGTAVLVYANRPECSTLPSASGCGYGTKVVGGAVLSAGVVGLLVGALTWR*
Ga0157374_1103288033300013296Miscanthus RhizosphereVIAGTAVLVYANRPECRLNDRANGCGYGTKVAGSAVLSAGIVGLLVGALTWR*
Ga0157378_1076783423300013297Miscanthus RhizosphereQGQPYPYPYPPAYHVRHDGSIAALMIGAAAAITGTAVLVYANRPECTFAPYAGGCGYGTKVVGGAVLAGGVVGLFVGALTW*
Ga0157378_1250118313300013297Miscanthus RhizosphereITGAAILVYANRPDCRYREFATGCGYGTKVVGGALLSGGAVGLTIGALTWR*
Ga0163162_1161288823300013306Switchgrass RhizosphereVLNDRGAPLPGEAGSLAQRRGYGRRGGRNDAARAEILLGAVAAIAGAAVLVYANRPECNTDPGANGCGYGTKVAGSAVLSAGLVGLLGGPLTWR*
Ga0134078_1035883023300014157Grasslands SoilLACGKRVCSRRSRRDGSVAALIIGSAAVIAGTAVLVYANRPECSTSQVAGGCGYGTKVIGTSVLAGGAVSLFVGALTW*
Ga0163163_1053192223300014325Switchgrass RhizospherePYPYPYPPAYHVRHDGSIAALMIGAAAAITGTAVLVYANRPECTFAPYAGGCGYGTKVVGGAVLAGGVVGLFVGALTW*
Ga0132256_10341519613300015372Arabidopsis RhizosphereDGSIAALMIGAAAAITGTAVLVYANRPECTFAPYAGGCGYGTKVVGGAVLAGGVVGLFVGALTW*
Ga0182041_1106093323300016294SoilPMLGAPVESRAAFGQWGRGYRRGRGRNAGAATAIFLGAAGTIAGTALLVYAGRPECGGNPELGGCGYGTKVLGGAVLSAGLVGVMVGALTWR
Ga0182037_1185667813300016404SoilMTAIVLGAIASIAGAAILVYANRPDCSTNQMASGYGYGTKVAGGAVLSAGAVGLVIGAVTWP
Ga0187779_1077114023300017959Tropical PeatlandDNRDGSMAAMILGAAAAITGASLLFYANRPECDARPYAGGCGYGTKVIGGAVLTGGLVSVTIGALTW
Ga0066669_1093824313300018482Grasslands SoilGAVGTVAGAAVLVYANRPDCSTNPNLGGCGYGTKVVGGAVLTAGLVGILTGALLWR
Ga0066669_1203675923300018482Grasslands SoilVKRPAGAAATITGAAILVYANRPDCSVNRTLNGCGYGTKVVGGAVLSAGAVGMVAGAIAW
Ga0210408_1044524423300021178SoilTAIVLGAVGTIAGAAVLVYANRPECNANPALGGCGYGTKVIGGAVLSAGLVGLTIGALTW
Ga0210408_1106214823300021178SoilDAARGEIIFGAVASIAGAAVLVYANRPECSTNQMASGCGYGTKVIGGAVLSAGLVTLLIGAVTWR
Ga0210410_1044607413300021479SoilAIMVGSVVAIAGAAILVYANRPECDVHQFAGGCGYGTKVVGGAVLSGGLVSLIVGALTWR
Ga0126371_1294838623300021560Tropical Forest SoilSIAAIAGGALLVYANRPECSVDHLAGGCSYGTKVAGGAVLAGGVLGITVGALTWR
Ga0126371_1336393413300021560Tropical Forest SoilAAFGQWGRGYRRGRGRNAGAATAIFLGAAGTIAGTALLVYAGRPECGGNPELGGCGYGTKVLGGAVLSAGLVGVMVGALTWR
Ga0213852_140766923300021858WatershedsAIMIGAAAAITGGALLVYANRPECATRQFAGGCGYGTKVVGGAVLSGGVAGLFVGALTWR
Ga0242659_110686023300022522SoilVGSIVSIAGAAILVYANRPECHTHQFAGGCGYGTKVVGGAVLSGGIVSLVVGALTWR
Ga0242662_1033482423300022533SoilMSHDGSLAAIMIGAAAAITGGALLVYANRPECATRQFAGGCGYGTKVVGGAVLSGGIASLFVAALTWR
Ga0207692_1119253623300025898Corn, Switchgrass And Miscanthus RhizosphereLMLGAAAAITGTALLVYANRPECTTNQLAGGCGYGTKVVGGAVLSGGVVGLVIGALTWR
Ga0207654_1094475613300025911Corn RhizosphereNQAALTAIMLGAVGAIAGTAVLVYANRPDCNVNPNLGGCGYGTKVVGASVLTGGVVGLVAGAVMWR
Ga0207707_1145460613300025912Corn RhizosphereAGTAVLVYANRPECNMNQSAGGCGYGTKVIGGSVLAGGVVSLFVGALTWR
Ga0207663_1054098223300025916Corn, Switchgrass And Miscanthus RhizosphereSIAALMLGSIAAIAGTAVLVYANRPECTTNQFAGGCGYGTKVVGGAVLSGGVVGLVIGALTWR
Ga0207694_1101914413300025924Corn RhizosphereSTFGQRGFRGRGRRDNDGARAAIILGAVATIAGTAVLVYANRPDCSTNPTAGGCGYGTKVVGGALLTAGVVSLLVGALTWR
Ga0207650_1178799213300025925Switchgrass RhizosphereALVTITGGAILVYANRPDCKFYGGQGCGYGTRVIGGAILSAGLVGMLAGAVAWK
Ga0207686_1158949313300025934Miscanthus RhizosphereRRRSGGRNGGAAAAIILGAAAAIAGTAVLVYANRPDCVGNRITNGCGYGTKVIGGSVLAGGVVSVVVGAATWR
Ga0207711_1053203833300025941Switchgrass RhizosphereITGTAILVYAHRPDCRYHEFASGCGYGTKVVGGAVVAGGVVGLVVGALTW
Ga0207661_1120519713300025944Corn RhizosphereGTAVLVYANRPDCNVNPNLGGCGYGTKVVGASVLTGGVVGLVAGAVMWR
Ga0207677_1016531033300026023Miscanthus RhizosphereMLGAVGAIAGTAVLVYANRPDCNVNPNLGGCGYGTRVVGASVLSGGIVGLMVGAVMWR
Ga0207677_1201529113300026023Miscanthus RhizosphereYPYPYPPAYHVRHDGSIAALMIGAAAAITGTAVLVYANRPECTFAPYAGGCGYGTKVVGGAVLAGGVVGLFVGALTW
Ga0207676_1127317813300026095Switchgrass RhizosphereQRRGYRGRGSGRHDGARAAIFLGAVGVIAGTAVLVYTNRPECRLDERANGCGYGTKVTGSAVLSAGIVGLVVGALTWR
Ga0209068_1014006923300027894WatershedsVGSAVLIYANRPECSVSANNSGCGYGTKVVGGAVLTAGLAGLTIGAITWR
Ga0209583_1058143323300027910WatershedsGAPYPYRPRRNGAIAAIMIGAAAAITGAAVLFYANRPECSTNPIASGCGYGPKVVGTAALSGGLVGLFIGALTWR
Ga0209698_1100803013300027911WatershedsRGGGGRNGAVAALLIGATASIAGAAILIYANRPECSTTDQMASGCGYGTKVIGGAVLTGGIVALAIGALTWR
Ga0209069_1088878213300027915WatershedsIMIGAAAAITGAAVLFYANRPECNTDPGAGGCGYGPKVVGTAALSGGLVGLFVGALTWR
Ga0209168_1017033413300027986Surface SoilTAIFLGAAGAIAGTATLLYANRPECGFSPNAGGCGYGTKVVGGSVLAAGVVGLVVGAALW
Ga0268265_1090873313300028380Switchgrass RhizosphereAAMVLGAGAAIAGAAVLVYANRPDCRPSQTTNGCGYGTKVIGGAVLSAGVVGLVAGALTW
Ga0265461_1257504213300030743SoilRDGSIAAIMVGSVVAIAGAAILIYANRPECDVHQFAGGCGYGTKVVGGAVLSGGVVSLVVGALTWR
Ga0308198_110200213300030904SoilANRPECNGNPNRSGCGYGTKVVGGAVLSVGIVGIVVGAARWR
Ga0318542_1043021623300031668SoilWGRGYRRGRGRNAGAATAIFLGAAGTIAGTALLVYAGRPECGGNPELGGCGYGTKVLGGAVLSAGLVGVMVGALTWR
Ga0307469_1214549713300031720Hardwood Forest SoilGQVYRGRPYSLRRHDGSMAAILLGSAAAIAGTAVLVYANRPECSYNQYAGGCGYGTKVVGTSVLVGGVVSLFVGALTW
Ga0307479_1171387713300031962Hardwood Forest SoilASVDSSVLSQRGFGRGRGRGRNDAATAAIVLGAIGTIAGAAVLVYADRPECNANPNLGGCGYGTKVVGGAVLTAGLVGLMVGALTWR
Ga0318532_1033062023300032051SoilRGRGRNAGAATAIFLGAAGTIAGTALLVYAGRPECGGNPELGGCGYGTKVLGGAVLSAGLVGVMVGALTWR
Ga0307471_10327293023300032180Hardwood Forest SoilTIAGTAVLVYANRPECRTVPSAGGCGYGTKVVGGAVLSAGLVGLIVGAVTWR
Ga0335085_1157709823300032770SoilVAAIAGTAVLVYANRPECSTNQLAGGCGYGTKVVGGAVLSAGVVGVVVGAITW
Ga0335085_1180022113300032770SoilFHASDDQVYVGPPVPMYRHSNDGALAAILIGATAAITGTAVLVYANRPECSFNPYGGGCGYGTKVVGGAILAGGIVGLTVGALIWK
Ga0310810_1017726213300033412SoilAGTAILLYANRPECSTNPYRADGCGYGTKVVGGAALGLGVMGFTIAAITW
Ga0316624_1222092713300033486SoilGRHAAAAAIILGAVGSIAGGAILVYANRPECSTNPVASGCGYGTKVIGGAVLSAGIVGLVVGALTWR
Ga0316628_10412001623300033513SoilRNRAVAAIAIGAVASIAGAAILVYANRPECGTNQTASGCGYGTKVVGGAVLSAGIVGLLVGALTWR
Ga0370493_0027182_1464_16433300034129Untreated Peat SoilLVLGAIGTIAGSALLLYANRPECSAHQFADGCGYGTKVVGGSLLSAGIVGVVVGAVTWR


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