Metagenome / Metatranscriptome Family F105246

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F105246
Family Type	Metagenome / Metatranscriptome
Number of Sequences	100
Average Sequence Length	54 residues
Representative Sequence	MYTLIERLIDESIEAGWQYAHKHTDSPTEDTIKHCIQRYIMLGFDETFEFDQEE
Number of Associated Samples	37
Number of Associated Scaffolds	100

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	56.52 %
% of genes near scaffold ends (potentially truncated)	8.00 %
% of genes from short scaffolds (< 2000 bps)	19.00 %
Associated GOLD sequencing projects	27
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.71

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (94.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous (71.000 % of family members)
Environment Ontology (ENVO)	Unclassified (89.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (98.000 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66 1DelMOSum2010_1000833610 2DelMOSum2010_100178563 3DelMOSum2011_101587892 4DelMOSum2011_101629172 5DelMOSum2011_101718911 6DelMOSpr2010_102018792 7Ga0075466_11089324 8Ga0075466_11168612 9Ga0075466_11522732 10Ga0075495_10653181 11Ga0075495_10797633 12Ga0075495_11164451 13Ga0075467_101039776 14Ga0075467_101405684 15Ga0075467_103157511 16Ga0075467_103176943 17Ga0075467_105362552 18Ga0075467_106339932 19Ga0075467_106713012 20Ga0070748_12791662 21Ga0070747_12050014 22Ga0070747_13339632 23Ga0099851_10718711 24Ga0099847_12256873 25Ga0099847_12279851 26Ga0099846_13432711 27Ga0115005_103886622 28Ga0115571_10177742 29Ga0136655_10779983 30Ga0136655_11441562 31Ga0136655_11578861 32Ga0136655_11635991 33Ga0136655_12541153 34Ga0129324_101966373 35Ga0129324_103980031 36Ga0129332_10023832 37Ga0129327_100696845 38Ga0129327_104385282 39Ga0129327_108092681 40Ga0180120_101748622 41Ga0180120_102350611 42Ga0213862_102983962 43Ga0213863_101114043 44Ga0213869_101277901 45Ga0213861_100829786 46Ga0213868_100294794 47Ga0213868_100688321 48Ga0213868_106050491 49Ga0212030_10000436 50Ga0212030_10039261 51Ga0212030_10206993 52Ga0212030_10382031 53Ga0212030_10400731 54Ga0212030_10413632 55Ga0212030_10416412 56Ga0212030_10455912 57Ga0212030_10627392 58Ga0212029_10462332 59Ga0196889_10075311 60Ga0196889_10447683 61Ga0196889_10722562 62Ga0196889_11085373 63Ga0212022_10041271 64Ga0196887_10731721 65Ga0196887_11084151 66Ga0196887_11272041 67Ga0196887_11312962 68Ga0208148_10207702 69Ga0208148_10263824 70Ga0208148_10801643 71Ga0208148_11205852 72Ga0208303_10289691 73Ga0208303_10440154 74Ga0208303_10515442 75Ga0208303_10545614 76Ga0208303_10785161 77Ga0208660_10424993 78Ga0208660_10468572 79Ga0208660_10695952 80Ga0208660_10741432 81Ga0208643_10330061 82Ga0208643_10466665 83Ga0208643_10589262 84Ga0208643_10786561 85Ga0208643_10856943 86Ga0208643_11193422 87Ga0208643_11304061 88Ga0208643_11324611 89Ga0208643_11559841 90Ga0208643_11654852 91Ga0208160_10178613 92Ga0208134_10337875 93Ga0208134_10640543 94Ga0208134_10772832 95Ga0208134_10937152 96Ga0208134_11743671 97Ga0208134_11816363 98Ga0208545_11538431 99Ga0316201_109415432 100Ga0314858_119462_521_673
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66 1DelMOSum2010_1000833610 2DelMOSum2011_101587892 3DelMOSpr2010_102018792 4Ga0075466_11089324 5Ga0075467_101039776 6Ga0099847_12279851 7Ga0115005_103886622 8Ga0115571_10177742 9Ga0136655_11441562 10Ga0136655_11578861 11Ga0213862_102983962 12Ga0212030_10455912 13Ga0196889_11085373 14Ga0208303_10440154 15Ga0314858_119462_521_673
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54 1Ga0196887_10731721 2DelMOSum2010_100178563 3DelMOSum2011_101629172 4DelMOSpr2010_102018792 5Ga0075495_11164451 6Ga0075467_101039776 7Ga0075467_103176943 8Ga0115005_103886622 9Ga0129324_103980031 10Ga0180120_101748622 11Ga0213862_102983962 12Ga0212030_10039261 13Ga0212030_10416412 14Ga0212030_10627392 15Ga0196889_10075311 16Ga0196889_11085373 17Ga0208303_10515442 18Ga0208660_10468572 19Ga0208134_10937152 20Ga0314858_119462_521_673
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 52.44% β-sheet: 0.00% Coil/Unstructured: 47.56%
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Predicted 3D Structure

Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.71
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.71
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
f.35.1.1: Multidrug efflux transporter AcrB transmembrane domain	d1iwga7	1iwg	0.7386
d.89.1.0: automated matches	d3l57a_	3l57	0.73451
d.127.1.1: Creatinase/aminopeptidase	d1chma2	1chm	0.72872
c.68.1.0: automated matches	d4dmva_	4dmv	0.72056
a.25.1.0: automated matches	d5uwza_	5uwz	0.70955

Showing 1 to 5 of 5 entries

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 100 Family Scaffolds
PF11753	DUF3310	7.00
PF00149	Metallophos	2.00
PF08291	Peptidase_M15_3	1.00
PF12850	Metallophos_2	1.00
PF13384	HTH_23	1.00
PF08534	Redoxin	1.00
PF01370	Epimerase	1.00
PF02867	Ribonuc_red_lgC	1.00
PF02195	ParBc	1.00
PF02739	5_3_exonuc_N	1.00

Showing 1 to 10 of 10 entries

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COG ID	Name	Functional Category	% Frequency in 100 Family Scaffolds
COG0209	Ribonucleotide reductase alpha subunit	Nucleotide transport and metabolism [F]	1.00
COG0258	5'-3' exonuclease Xni/ExoIX (flap endonuclease)	Replication, recombination and repair [L]	1.00

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	6.00 %
Unclassified	root	N/A	94.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	6.00 %
Unclassified	root	N/A	94.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	6.00 %
Unclassified	root	N/A	94.00 %

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	2.00 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.00 %
Unclassified	root	N/A	94.00 %

Name	Rank	Taxonomy	Distribution
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	2.00 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2.00 %
Unclassified	root	N/A	94.00 %

Name	Rank	Taxonomy	Distribution
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2.00 %
Unclassified	root	N/A	94.00 %
Vibrionales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales	1.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.00 %
unclassified Bacteroidetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes	2.00 %
Vibrionaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae	1.00 %

Name	Rank	Taxonomy	Distribution
Bacteroidetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	2.00 %
Unclassified	root	N/A	94.00 %
Vibrio	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae → Vibrio	1.00 %

Name	Rank	Taxonomy	Distribution
Bacteroidetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	2.00 %
Unclassified	root	N/A	94.00 %
Vibrio crassostreae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae → Vibrio → Vibrio crassostreae	1.00 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000101\|DelMOSum2010_c10008336	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	6916	Open in IMG/M
3300000101\|DelMOSum2010_c10017856	All Organisms → cellular organisms → Bacteria	4240	Open in IMG/M
3300006029\|Ga0075466_1108932	Not Available	744	Open in IMG/M
3300006029\|Ga0075466_1116861	Not Available	710	Open in IMG/M
3300006029\|Ga0075466_1152273	All Organisms → cellular organisms → Bacteria → Proteobacteria	594	Open in IMG/M
3300006399\|Ga0075495_1079763	Not Available	527	Open in IMG/M
3300006803\|Ga0075467_10536255	Not Available	600	Open in IMG/M
3300007540\|Ga0099847_1225687	Not Available	542	Open in IMG/M
3300010316\|Ga0136655_1077998	Not Available	1012	Open in IMG/M
3300010316\|Ga0136655_1157886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae → Vibrio → Vibrio crassostreae	676	Open in IMG/M

Showing 1 to 10 of 23 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	92.00%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	6.00%
Oceanic	Environmental → Aquatic → Marine → Oceanic	1.00%
Pelagic	Environmental → Aquatic → Marine → Pelagic	1.00%

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	1.00%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	91.00%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	6.00%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	1.00%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	1.00%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	71.00%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	12.00%
Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine	6.00%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	1.00%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	1.00%
Sea-Ice Brine	Environmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine	1.00%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	7.00%
Worm Burrow	Environmental → Aquatic → Marine → Coastal → Sediment → Worm Burrow	1.00%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000101	Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010	Environmental	Open in IMG/M
3300000115	Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011	Environmental	Open in IMG/M
3300000116	Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010	Environmental	Open in IMG/M
3300006029	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNA	Environmental	Open in IMG/M
3300006399	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_RNA2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006803	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_>0.8_DNA	Environmental	Open in IMG/M
3300006920	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12	Environmental	Open in IMG/M
3300007276	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31	Environmental	Open in IMG/M
3300007538	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG	Environmental	Open in IMG/M
3300007540	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG	Environmental	Open in IMG/M

Showing 1 to 10 of 37 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
DelMOSum2010_1000833610	3300000101	Marine	ERLVDESIEAGWRYAHKHTDSPTEDTIKHCIELYIMQGFDEAFQFDQED*
DelMOSum2010_100178563	3300000101	Marine	MQVKMYQLIERLVDESIEAGWRYAHKHTDSPTEDTIKHCIEIYIMQGFDEAFQFDQED*
DelMOSum2011_101587892	3300000115	Marine	MQVRMYRLIERLIDESIEAGWRYAHKHTDSPTEDTIKHCIERYIMLGFDETFEFDQEE*
DelMOSum2011_101629172	3300000115	Marine	MKVKMYRLIERLIDEGIEAGWQSAHKYTPYPTEDRIKHCIERYIHLGFMETFEFDQEES*
DelMOSum2011_101718911	3300000115	Marine	MYTLIERLVDESIEAGWRYAHKHTDSPTEDTIKHCIQRYMMLGFDETFEFDQEDI*
DelMOSpr2010_102018792	3300000116	Marine	MYPLIERLIDEGIEAGWNRAHKHTDKPIEETIKQCIEQYIMNGFAETFEFDKED*
Ga0075466_11089324	3300006029	Aqueous	MNMQVRMYPLIERLVDESIEAGWQYAHKHTDSPTEDTIKHCIQRYMMLG
Ga0075466_11168612	3300006029	Aqueous	MKVKMYPLIERLIDEGIEAGWQYAHKHTAYPTEDTIKHCIQRYIMLGFDETFEFDQEK*
Ga0075466_11522732	3300006029	Aqueous	MYTLIERLVDESIEAGWQYAHKHTDYPTEDTIKHCIQRYIMLGFDEAFQFDQEEL*
Ga0075495_10653181	3300006399	Aqueous	MKVKMYRLIERLIDEGIEAGWQSAHYTPYPTEDTIKHCIQRYIMLGFDEIFEFDQEEP*
Ga0075495_10797633	3300006399	Aqueous	MYPLIERLIDEGIEAGWQYAHKHTAYPTEDTIKHCIQRYIMLGFDETFEFDQEDI*
Ga0075495_11164451	3300006399	Aqueous	MQVKMYPLIERLIDEGIESGWRYAHKHTDSPTEDTIKHCIEKYIMLGFNETFEFDKEE*
Ga0075467_101039776	3300006803	Aqueous	VEEGIEAGWQYAHKHTDYPTEDTIKHCIQQYMMLGFDETFEFDKED*
Ga0075467_101405684	3300006803	Aqueous	YTLIERLVDESIEAGWQYAHKHTDSPTEDTIKHCIQRYMMLGFDEVFQFDQEES*
Ga0075467_103157511	3300006803	Aqueous	YTLIERLVDESIEAGWQYAHKHTDSPTEDTIKHCIQRYMMLGFDETFQFDQED*
Ga0075467_103176943	3300006803	Aqueous	MKVKTYRLIERLIDEGIEAGWQSAHYTPYPTEDTIKHCIQRYIMLGFDEIFEFDQEEP*
Ga0075467_105362552	3300006803	Aqueous	MYPLIERLIDEGIEAGWQYAHKHTAYPTEDTIKHCIQRYIMLGFDETFEFDQEK*
Ga0075467_106339932	3300006803	Aqueous	MKVKMYQLIERLVDESIEAGWRYAHKHTDSPTEDTIKHCIEIYIMQGFDEAFQFDQED*
Ga0075467_106713012	3300006803	Aqueous	MYQLIERLIDESIEAGWQYAHKHTDSPTEDTIKHCIEQYIMLGFDETFKFDSEEFE*
Ga0070748_12791662	3300006920	Aqueous	MQVRMYRLIERLIDESIEAGWRYAHKHTDSPTEDTIKHCIERYIMLGFDEAFQFDQED*
Ga0070747_12050014	3300007276	Aqueous	MQVKMYPLIERLIDEGIESGWRYAHKHTDSPTEDTIKHCIEKYIMLGFNETFE
Ga0070747_13339632	3300007276	Aqueous	LVDESIEAGWQYAHKHTDSPTEDTIKHCIQQYMMLGFDEVFQFDQED*
Ga0099851_10718711	3300007538	Aqueous	ESIEAGWQYAHKHTDSPTEDTIKHWIEHYIMLGFAETFEFDQED*
Ga0099847_12256873	3300007540	Aqueous	QLIERLIDESIEAGWQYAHKHTDSPTEDTIKHCIEQYIMLGFDETFQFDQEE*
Ga0099847_12279851	3300007540	Aqueous	LIERLVDESIEAGWQYAHKHTDSPAEDTIKHCIQRYMMLGFDETFKFDSEEFE*
Ga0099846_13432711	3300007542	Aqueous	MQVRMYTLIERLIDESVEAGWQYAHKHTDSPTEDTIKRCIEQYIMLGFDEVFQFDQEE*
Ga0115005_103886622	3300009432	Marine	MKVKMYPLIERIVEEGIESGWNRAHKNTDTPTEETIKSCIWKYILHGFDEVFEFEQEE*
Ga0115571_10177742	3300009495	Pelagic Marine	MKVKMYQLIERLVEEGIEAGYARAHKHTGYPNGDAVKDTIQRYIMQGFDETFEFNQEEE*
Ga0136655_10779983	3300010316	Freshwater To Marine Saline Gradient	MQVKMYQLIERLIDESIEAGWQYAHKHTDSPTEDTIKHCIEQYIMLGFDETFQFDQEE*
Ga0136655_11441562	3300010316	Freshwater To Marine Saline Gradient	MKVKMYPLIERLVEEGIEAGWQSAHYTPYPTEDTIKHCIQRYMMLGFDEIFEFDQEES*
Ga0136655_11578861	3300010316	Freshwater To Marine Saline Gradient	MYTLIERLVDESVEAGWQYAHKHTDSPTEDTIKRCIEQYIMLGFDEVFQ
Ga0136655_11635991	3300010316	Freshwater To Marine Saline Gradient	MKVRMYTLIERLIDESVEAGWQYAHKHTDSPTEDTIKRCIEQYIMLGFDEVFQ
Ga0136655_12541153	3300010316	Freshwater To Marine Saline Gradient	MYTLIERLVDESIEAGWQYAHKHTDSPTEDTIKHCIEQYIMLGFDETFQFDQEE*
Ga0129324_101966373	3300010368	Freshwater To Marine Saline Gradient	MYQLIERLIDESIEAGWQYAHKHTDYPTEDTIKHCIEKYIMLGFDETFEFDKEE*
Ga0129324_103980031	3300010368	Freshwater To Marine Saline Gradient	MKVKMYTLIERLVDESIEAGWQYAHKHTDSPTEDTIKHSIEHYIMNGFAETF
Ga0129332_10023832	3300012969	Aqueous	MKVKMYPLIERLIDESVEAGWQYAHKHTDSPTEDTIKHCIEQYIMLGFDETFKFDSEEFE
Ga0129327_100696845	3300013010	Freshwater To Marine Saline Gradient	DESIEAGWQYAHKHTDSPTEDTIKHCIQQYMMLGFDEVFQFDQED*
Ga0129327_104385282	3300013010	Freshwater To Marine Saline Gradient	VDESIEAGWQYAHKHTDSPTEDTIKHCIQRYMMLGFDETFQFDQED*
Ga0129327_108092681	3300013010	Freshwater To Marine Saline Gradient	VKMYPLIERLIDEGIEAGWQYAHKHTAYPTEDTIKHCIQRYIMLGFDETFEFDQEK*
Ga0180120_101748622	3300017697	Freshwater To Marine Saline Gradient	MYPLIERLIDEGIEAGWQSAHKHTDSPTEDTIKHCIEQYIMLGFDEVFQFDQED
Ga0180120_102350611	3300017697	Freshwater To Marine Saline Gradient	MYTLIERLVDESVEAGWQYAHKHTDYPTEDTIKHCIQRYIMLGFDETFEFDKEE
Ga0213862_102983962	3300021347	Seawater	MYDPIKEVVEKGIEEGWQYAHKHTDSPTEDTIKHCIEKYVMLGFNEIFQYERNDDGKED
Ga0213863_101114043	3300021371	Seawater	MNMQVRMYPLIERLVDESIEAGWQYAHKHTDSPTEDTIKHCIQRYMMLGFDETFKFDSEEFE
Ga0213869_101277901	3300021375	Seawater	VKMYTLIERLVDESIEAGWRYAHKHTDSPTEDTIKHCIQRYMMLGFDETFEFDQEDI
Ga0213861_100829786	3300021378	Seawater	ESIEAGWQYAHKHTDSPTEDTIKHCIQRYMMLGFDETFKFDSEEFE
Ga0213868_100294794	3300021389	Seawater	IERLVDESIEAGWQYAHKHTDSPTEDTIKHCIQRYMMLGFDEVFQFDQEES
Ga0213868_100688321	3300021389	Seawater	IERLVDESIEAGWQYAHKHTDSPTEDTIKHCIQRYMMLGFDETFKFDSEEFE
Ga0213868_106050491	3300021389	Seawater	MNMQVRMYPLIERLVDESIEAGWQYAHKHTDSPTEDTIKHCIQRYMMLGFDE
Ga0212030_10000436	3300022053	Aqueous	MQVKMYQLIERLIDESIEAGWQYAHKHTDSPTEDTIKHCIEQYIMLGFDETFQFDQEE
Ga0212030_10039261	3300022053	Aqueous	MKVKMYPLIERLVEEGIEAGWQSAHYTPYPTEDTIKHCIQRYMMLGFDEIFEFDQED
Ga0212030_10206993	3300022053	Aqueous	MYTLIERLVDESIEAGWQYAHKHTDYPTEDTIKHCIQRYIMLGFDEAFQFDQEE
Ga0212030_10382031	3300022053	Aqueous	MQVRMYRLIERLIDESIEAGWRYAHKHTDSPTEDTIKHCIERYIMLGFDETFEFDQEDI
Ga0212030_10400731	3300022053	Aqueous	MQVKMYPLIERLIDEGIEAGWQSAHKHTDSPTEDTIKHCIEQYIMLGF
Ga0212030_10413632	3300022053	Aqueous	MKVRMYTLIERLVDESIEAGWQYAHKHTDSPTEDTIKHCIEQYIMLGFDETFQFDQEE
Ga0212030_10416412	3300022053	Aqueous	MKVRMYPLIERLIDEGIESGWQDAHKHTDSPIEETIKHCIEHYIMLGFAETFEFDQED
Ga0212030_10455912	3300022053	Aqueous	MQVKMYPLIERLVEEGIEAGWSRAHKHTDTPYGDAVKDTIQRYIMQG
Ga0212030_10627392	3300022053	Aqueous	MYQLIERLVEEGIEAGWQYAHKHTDSPIEETIKDCIEQYIMLGFDETFEFDKED
Ga0212029_10462332	3300022063	Aqueous	MKVRMYTLIERLIDESVEAGWQYAHKHTDSPTEDTIKRCIEQYIMLGFDEV
Ga0196889_10075311	3300022072	Aqueous	MYTLIEKLVDESIEAGWQYAHKHTDSPTEDTIKHCIQQYMMLGFDEVFQFDQED
Ga0196889_10447683	3300022072	Aqueous	MYQLIERLIDESIEAGWQYAHKHTDSPTEDTIKHCIEQYIMLGFDETFQFDQEE
Ga0196889_10722562	3300022072	Aqueous	MYPLIERLVDESIEAGWQYAHKHTDSPTEDTIKHCIQQYMMLGFDEVFQFDQED
Ga0196889_11085373	3300022072	Aqueous	VEEGIEAGWSRAHKHTDTPYGDAIKDTIQRYIMQGFDETFEFDQDES
Ga0212022_10041271	3300022164	Aqueous	IDESVEAGWQYAHKHTDSPTEDTIKHCIEQYIMLGFDETFKFDSEEFE
Ga0196887_10731721	3300022178	Aqueous	MYTLIERLIDESIEAGWQYAHKHTDSPTEDTIKHCIQRYIMLGFDETFEFDQEE
Ga0196887_11084151	3300022178	Aqueous	MKVRMYTLIERLVDESVEAGWQYAHKHTDSPTEDTIKRCIEQYIMLGFDEVFQF
Ga0196887_11272041	3300022178	Aqueous	VKMYTLIEKLVDESIEAGWQYAHKHTDSPTEDTIKHCIQQYMMLGFDEVFQFDQED
Ga0196887_11312962	3300022178	Aqueous	IERLIDEGIEAGWQYAHKHTDSPTEDTIKHCIELYIMQGFDETFEFDKED
Ga0208148_10207702	3300025508	Aqueous	MKVKMYPLIERLVEEGIEAGWQSAHYTPYPTEDTIKHCIQRYMMLGFDEIFEFDQEES
Ga0208148_10263824	3300025508	Aqueous	MKVKMYQLIERLVDESIEAGWRYAHKHTDSPTEDTIKHCIEIYIMQGFDEAFQFDQED
Ga0208148_10801643	3300025508	Aqueous	MKVKMYRLIERLIDEGIEAGWQSAHKYTPYPTEDRIKHCIERYIHLGFMETFEFDQEES
Ga0208148_11205852	3300025508	Aqueous	MKVKMYPLIERLIDEGIEAGWQYAHKHTAYPTEDTIKHCIQRYIMLGFDETFEFDQEK
Ga0208303_10289691	3300025543	Aqueous	MKVRMYTLIERLIDESVEAGWQYAHKHTDSPTEDTIKRCIEQYIMLGFDEVFQF
Ga0208303_10440154	3300025543	Aqueous	MKVRMYPLIERLVEEGIEAGWQYAHKHTDSPIEETIKHCIEHYIMLGFAETF
Ga0208303_10515442	3300025543	Aqueous	MKVKMYQLIERLVEEGIEAGYARAHKHTGYPNGDAVKDTIQRYIMQGFDETFEFNQEEE
Ga0208303_10545614	3300025543	Aqueous	MQVRMYTLIERLVDESVEAGWQYAHKHTDSPTEDTIKRCIEQYIMLGFDEVFQF
Ga0208303_10785161	3300025543	Aqueous	MQVKMYQLIERLIDEGIEAGWQYAHKHTDSPTEDTIKHCIELYIMQGFDE
Ga0208660_10424993	3300025570	Aqueous	MYQLIERLIDESIEAGWQYAHKHTDYPTEDTIKHCIQRYIMLGFDEAFQFDQEDL
Ga0208660_10468572	3300025570	Aqueous	MQVRMYTLIERLIDESVEAGWQYAHKHTDSPTEDTIKRCIEQYIMLGFDEVFQFDQEEL
Ga0208660_10695952	3300025570	Aqueous	MKVKMYTLIERLVDESIEAGWQYAHKYTPYPTEDTIKHCIQRYMMLGFDEVFQFDQED
Ga0208660_10741432	3300025570	Aqueous	MYPLIERLIDEGIEAGWQYAHKHTAYPTEDTIKHCIQRYIMLGFDETFEFDQEK
Ga0208643_10330061	3300025645	Aqueous	MKVKMYTLIERLVDESIEAGWQYAHKHTDSPTEDTIKHCIQRYMMLGFD
Ga0208643_10466665	3300025645	Aqueous	MQVKMYQLIERLIDESIEAGWQYAHKHTDSPTEDTIKHCIQRYIMLGFDET
Ga0208643_10589262	3300025645	Aqueous	MKVKMYLLIERLIDEGIEAGWQYAHKHTAYPTEDTIKHCIQRYIMLGFDETFEFDQEEC
Ga0208643_10786561	3300025645	Aqueous	MKVKMYTLIERLIDESIEAGWQYAHKHTDSPTEDTIKHCIAQYIMLGFD
Ga0208643_10856943	3300025645	Aqueous	MQVKMYPLIERLVDEGIELGWRYAHKHTDYPTEDTIKHCIEKYIMLGFNETFEFDKEE
Ga0208643_11193422	3300025645	Aqueous	MYRLIERLIDEGIEAGWQYAHKHTDYPTEDTIKHCIQRYIMLGFDETFQFDQEE
Ga0208643_11304061	3300025645	Aqueous	MQVKMYPLIERLIDEGIESGWRYAHKHTDSPTEDTIKHCIEKYIMLGF
Ga0208643_11324611	3300025645	Aqueous	MYTLIERLIDESIEAGWQYAHKHTAYPTEDTIKHCIQRYIMLGFDETFEFDQEE
Ga0208643_11559841	3300025645	Aqueous	RLIDEGIEAGWNRAHKHTDTPIEETIKQCIEQYIMQGFDETFEFDKED
Ga0208643_11654852	3300025645	Aqueous	MQVKMYQLIERLIDESIEAGWQYAHKHTDSPTEDTIKHCIAQYIMLGFD
Ga0208160_10178613	3300025647	Aqueous	MQVRMYTLIERLIDESVEAGWQYAHKHTDSPTEDTIKRCIEQYIMLGFDEVFQFDQEE
Ga0208134_10337875	3300025652	Aqueous	MQVKMYQLIERLIDESIEAGWQYAHKHTDSPTEDTIKHCIEQYIMLGFDET
Ga0208134_10640543	3300025652	Aqueous	MYTLIERLVDESIEAGWQYAHKHTDYPTEDTIKHCIQRYIMLGFDEAFQFDQEEL
Ga0208134_10772832	3300025652	Aqueous	MQVKMYPLIERLIDEGIESGWRYAHKHTDSPTEDTIKHCIEKYIMLGFNETFEFDKEE
Ga0208134_10937152	3300025652	Aqueous	QLIERLIDEGIEAGWQYAHKHTDSPTEDTIKHCIELYIMQGFDETFEFDKED
Ga0208134_11743671	3300025652	Aqueous	LIERLVDESIEAGWQYAHKHTDSPTEDTIKHCIQRYMMLGFDEVFQFDQED
Ga0208134_11816363	3300025652	Aqueous	MKVKMYTLIERLVDESIEAGWQYAHKHTDSPTEDTIKHCIQRYMMLGFDEV
Ga0208545_11538431	3300025806	Aqueous	MKVKMYTLIERLVDESIEAGWQYAHKHTDSPTEDTIKHCIQRYMMLGFDE
Ga0316201_109415432	3300032136	Worm Burrow	MKVKMYLLIERLIDEGIEAGWQYAHKHTAYPTEDTIKHCIQRYIMLGFDETFEFDQEDI
Ga0314858_119462_521_673	3300033742	Sea-Ice Brine	GRWGEEGIEAGWNRAHKHAFQKPNEATIKAYIEQYIMQGFDEAFYFDQEE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F105246

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences