NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F105224

Metagenome / Metatranscriptome Family F105224

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F105224
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 51 residues
Representative Sequence MNAEEIIKLNKEALYSSLTSTDTFGKFFNKSILHYAAIMEIFSFNKLGGI
Number of Associated Samples 89
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 0.00 %
% of genes from short scaffolds (< 2000 bps) 0.00 %
Associated GOLD sequencing projects 86
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (100.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater
(28.000 % of family members)
Environment Ontology (ENVO) Unclassified
(43.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(89.000 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78
1Ocean6-_01506300
2JGI20155J14468_101384242
3JGI11772J19994_10260822
4Ga0055584_1019214711
5Ga0066825_102500132
6Ga0066861_100583461
7Ga0074647_10258622
8Ga0076924_12308462
9Ga0075510_100008741
10Ga0104347_1111354
11Ga0105020_11969811
12Ga0105748_100498402
13Ga0105748_101905871
14Ga0075480_100376071
15Ga0075480_105011171
16Ga0111541_103569361
17Ga0103826_1072511
18Ga0129351_11401982
19Ga0129352_105649871
20Ga0129352_106932762
21Ga0163111_110402481
22Ga0163111_114686931
23Ga0163111_120390351
24Ga0116816_10576371
25Ga0182056_11703232
26Ga0182042_12644411
27Ga0181392_10159021
28Ga0181395_11499342
29Ga0181571_105488832
30Ga0181581_101409081
31Ga0181587_103691021
32Ga0181563_102164771
33Ga0181562_102172732
34Ga0181595_103931961
35Ga0181599_13434292
36Ga0181604_101288821
37Ga0181604_102400571
38Ga0181597_102100322
39Ga0211492_11007242
40Ga0211671_11031811
41Ga0211634_11291152
42Ga0211491_10284732
43Ga0211493_12120392
44Ga0211652_102732951
45Ga0211518_101346462
46Ga0211545_104585512
47Ga0211545_105366411
48Ga0211548_106520761
49Ga0211643_106787431
50Ga0211514_100053551
51Ga0211694_104826302
52Ga0211541_100830612
53Ga0181598_12944891
54Ga0213862_102597692
55Ga0213862_103155832
56Ga0213868_105131712
57Ga0213866_104366662
58Ga0255753_11392692
59Ga0255774_102328482
60Ga0255784_102137811
61Ga0255743_102893622
62Ga0228683_10175911
63Ga0228684_10356401
64Ga0228637_10353291
65Ga0228633_11456622
66Ga0228678_10497591
67Ga0233398_11279621
68Ga0228626_10201912
69Ga0233393_10963752
70Ga0209663_10072381
71Ga0209558_10279543
72Ga0209362_10120801
73Ga0208425_10527002
74Ga0209630_102189491
75Ga0247606_10237751
76Ga0247580_10571921
77Ga0247559_10357372
78Ga0247607_10650481
79Ga0247568_10487171
80Ga0228622_11212202
81Ga0247592_10525921
82Ga0247590_10174991
83Ga0228607_10496582
84Ga0208941_10242102
85Ga0247576_10566881
86Ga0247596_10894242
87Ga0228642_10770942
88Ga0256417_10558181
89Ga0256413_11471111
90Ga0247601_10210671
91Ga0247583_10801661
92Ga0257132_10209891
93Ga0315331_101817771
94Ga0315320_102575381
95Ga0315320_107550041
96Ga0315330_100943591
97Ga0315330_105893851
98Ga0315315_109644092
99Ga0315315_116485732
100Ga0315321_102618891
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 78.00%    β-sheet: 0.00%    Coil/Unstructured: 22.00%
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Variant

5101520253035404550MNAEEIIKLNKEALYSSLTSTDTFGKFFNKSILHYAAIMEIFSFNKLGGISequenceα-helicesβ-strandsCoilSS Conf. score
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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy


Visualization
Unclassified
100.0%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
River Water
Marine
Environmental And Host-Associated
Surface Seawater
Marine
Aqueous
Seawater
Marine Surface Water
Freshwater To Marine Saline Gradient
Estuary Water
Marine
Seawater
Salt Marsh
Marine
Marine
Pelagic Marine
Seawater
Saline Water And Sediment
Saline Water And Sediment
5.0%3.0%6.0%28.0%4.0%8.0%17.0%14.0%3.0%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ocean6-_015063002166559018Environmental And Host-AssociatedMNAEDIIKLKKNALYTSLESKDFFGKFFNKSMLHYAVIMEVFSKNNFDGISYEK
JGI20155J14468_1013842423300001354Pelagic MarineMNAEEIIKLNKDALYSSLTSTDTFGKFFNKSILHYAAIMEVFSSNKLGGISYEKLCHSIPKSL
JGI11772J19994_102608223300001748Saline Water And SedimentMNAEEIIKLNKEALYSSLTSTDTFGKFFNKSILHYAAIMEIFSYNKLGGISYEKLCHSI
Ga0055584_10192147113300004097Pelagic MarineMNAEEIIKLNKDALYSSLTSTDIFGKFFNKSILHYAAVMEIFSTNKLGGISYEKLCHSIPKSL
Ga0066825_1025001323300005510MarineMNAEEIIKLNKKALYESLSSSDKFGKFFNKSILHNAAIMEV
Ga0066861_1005834613300005522MarineMNAEEIINFNKKALYTSLTSSDTSRKFFNKSILHYAATMEIFSFTKT
Ga0074647_102586223300005611Saline Water And SedimentMNAEEIIKLNKEALYSSLTSTDTFGKFFNKSILHYAAIMEIFSYNKLGGISYEKLCHSIPKSLGSRS
Ga0076924_123084623300005747MarineMNAEEIIKLNKDALYSSLTSTDTFGKFFNKSILHYAAIMEVFSSNKLGGISYEK
Ga0075510_1000087413300006405AqueousMNAEEIIKLNKEALYSSLTSTDTFGKFFNKSILHYAAIMEIFSFNKL
Ga0104347_11113543300007271Marine Surface WaterMNAEEIIKLNKKALYESLSSSDKFGKFFNKSILHNAAIMEVFSCNRLG
Ga0105020_119698113300007514MarineMNAEEIIKLNKKALYESLSSSDKFGKFFNKSILHN
Ga0105748_1004984023300007992Estuary WaterNAEEIIKLNKDALYSSLTSTDTFGKFFNKSILHYAAIMEIFSSNKLGGISYEKLCHSIPKSLG*
Ga0105748_1019058713300007992Estuary WaterMNAEEIIKLNKEALYSSLTSTDTFGKFFNKSILHYAAIMEVFSSNKL
Ga0075480_1003760713300008012AqueousMNAEEIIKLNKEALYSSLTSTDTFGKFFNKSILHYAAIMEIFSFNKLGGISYEKL
Ga0075480_1050111713300008012AqueousMETNMNAEEIIKLNKEALYSSLTSSDIFGKFFNKSILHYAAIMEVFSFNKLGGISYEKLC
Ga0111541_1035693613300008097MarineMNSEQIIRLNKEALYSSLTSSDKFGRFFNKSILHYAAIMEVFS
Ga0103826_10725113300009338River WaterMNAEEIIKLNKKALYESLSSSDKFGKFFNKSILHNAAIMEVFSC
Ga0129351_114019823300010300Freshwater To Marine Saline GradientMNAEEIINLNKQALYSSLTSSDIFGKFFNKSILHYAAIME
Ga0129352_1056498713300012528AqueousMNAEEIIKLNKQALYSSLTSSDIFGKFFNKSILHYAAIMEVFSFNKLGGISYEKL
Ga0129352_1069327623300012528AqueousMNAEEIIKLNKDALYSSLTSTDIFGKFFNKSILHYAAVMEIFSTNKLGGISYEKLCH
Ga0163111_1104024813300012954Surface SeawaterMNAEEIINFNKKALYSSITSTNTSSRFFNKSILHY
Ga0163111_1146869313300012954Surface SeawaterMNAEEIINFNKKALYSSLTSTNTSSRFFNKSILHYAATMEIFSFTKTGGISYEKL
Ga0163111_1203903513300012954Surface SeawaterMNAEEIIKLNKTALYSSLESTNVFVKFFNKSILHNAVVMEIFSNNIFNGIS
Ga0116816_105763713300014030MarineMNAEEIIKLNKKALYESLSSSDKFGKFFNKSILHNAAIMEVFSCNRLGGISY
Ga0182056_117032323300016729Salt MarshMNAEEIIKLNKKALYESLSSSDKFGKFFNKSILHNAAIM
Ga0182042_126444113300016733Salt MarshMNAEEIIKLNKEALYSSLTSSDIFGKFFNKSILHYAAI
Ga0181392_101590213300017749SeawaterMNAEEIIKLNKDALYSSLTSTDTFGKFFNKSILHYAAVMEIFSTNKLGGISYEKLCHS
Ga0181395_114993423300017779SeawaterMNAEEIIKLNKDALYSSLTSTDTFGKFFNKSILHYAAVMEIFSTNKLG
Ga0181571_1054888323300017957Salt MarshMNAEEIIKLNKKALYESLSSSDKFGKFFNKSILHNAAIMEVFSCNRLGGISYEKLCHSIPKSLG
Ga0181581_1014090813300017962Salt MarshMNAEEIIKLNKKALYESLSSSDKFGKFFNKSILHNAAIMEVFS
Ga0181587_1036910213300017968Salt MarshMNAEEIIKLNKKALYESLSSSDKFGKFFNKSILHNAAIMEVFSCNR
Ga0181563_1021647713300018420Salt MarshMNAEEIIKLNKEALYSSLTSSDIFGKFFNKSILHYAAIMEVFSFNKLGGISYEKLCHSI
Ga0181562_1021727323300019459Salt MarshMNAEEIIKLNKEALYSSLTSTDTFGKFFNKSILHYAAIMEIFSFNK
Ga0181595_1039319613300020053Salt MarshMNAEEIIKLNKEALYSSLTSSDIFGKFFNKSILHYAAIMEVFSFNKLGGISYEKLCHSIPKSLEY
Ga0181599_134342923300020178Salt MarshMNAEEIIKLNKEALYSSLTSSDIFGKFFNKSILHYA
Ga0181604_1012888213300020191Salt MarshMNAEEIIKLNKEALYSSLTSSDIFGKFFNKSILHYAAIMEVFSFNKLGGI
Ga0181604_1024005713300020191Salt MarshMNAEEIIKLNKEALYSSLTSTDTFGKFFNKSILHYAAIMEIFSFNKLG
Ga0181597_1021003223300020194Salt MarshMNAEEIINLNKKALYSSLTSSNIFGKFFNKSILHYAAIMEVFSFNKLGGISYEKLCYS
Ga0211492_110072423300020238MarineMNAEEIIKLNKEALYSSLTSTDTFGKFFNKSILHYAAIMEVFSFNKI
Ga0211671_110318113300020270MarineMNSEQIIRLNKEALYSTLTSSDKFGRFFNKSILHYAAIMEVFSYNKLEGISYEKLCINIPKS
Ga0211634_112911523300020279MarineMFNWGKIMNAEEIIKLNKEALYSSLSSSDKFGKFFNKSILHYATIMEVFS
Ga0211491_102847323300020318MarineMNAEEIIKLNKEALYASLTSTDTFGKFFNKSILHYAAIMEVFSFNKLGGISYEKLCHSIPKSL
Ga0211493_121203923300020363MarineMNAEEIIKLNKEALYSSLTSSNKFGKFFNKSILHYATIMEVFSYNKLEGI
Ga0211652_1027329513300020379MarineMNAEEIIKLKKNALYTSLESKNFFGKFFYKSILHYVVILEVFSKNNLDGISYEKLCS
Ga0211518_1013464623300020440MarineMNAEEIIKLNKDALYSSLTSTDTFGKFFNKSILHYAAIMEVFSSNKLGGISYEKLCHSIPKSLGSRS
Ga0211545_1045855123300020452MarineMNAEEIINFNKKTLYSSITSSDVSSRFFNKSFLHYAASMEIFSFTKMGGISYEKLCLNIPKTLGS
Ga0211545_1053664113300020452MarineMNSEQIIKLNKEALYSTLTSSDKFGRFFNKSILHYAAIMEVFSYNKLDG
Ga0211548_1065207613300020454MarineMNAEEIINFNKKALYSSLTSSDISSRFFNKSLLHYAASMEI
Ga0211643_1067874313300020457MarineMDAEEIIKLKKNALYSSLESTDLFGRFFNKSILHNAVIMEIFSNNNIDGI
Ga0211514_1000535513300020459MarineMNAEEIINFNKKALYSSLTGTDTSSRFFNKSILHYAASMEIFSFN
Ga0211694_1048263023300020464MarineMNAEEIIKLKKNALYSSLESKDLFGKFFNKSMLHYAVIMEVFSKNNFDGISYEKLCGNVPKVLGSRS
Ga0211541_1008306123300020475MarineMNAEEIINFNKKALYSSLTSSDISSRFFNKSLLHY
Ga0181598_129448913300020810Salt MarshMNAEEIINLNKKALYSSLTSSNIFGKFFNKSILHYAA
Ga0213862_1025976923300021347SeawaterMNAEEIIKLNKEALYSSLTSTDTFGKFFNKSILHYAAI
Ga0213862_1031558323300021347SeawaterMNAEEIIKLNKQALYFSLTSSDIFGKFFNKSILHYAAIMEVFSFNKLGGISY
Ga0213868_1051317123300021389SeawaterMNAEEIIKLNKEALYSSLTSSDIFGKFFNKSILHYAAIMEVFSLNKLGGISYEKLCH
Ga0213866_1043666623300021425SeawaterMNAEEIIKLNKEALYSSLTSTDTFGKFFNKSILHYAAIMEIFSFNKLGGISYEKLCHSIPKSLGS
Ga0255753_113926923300022926Salt MarshMNAEEIIKLNKEALYSSLTSTDTFGKFFNKSILHYAAIMEIFSFNKLGGISYEKLCHSIP
Ga0255774_1023284823300023087Salt MarshMNSEEIIKLNKKALYESLSSSDKFGKFFNKSILHNAAIMEVFSCNRL
Ga0255784_1021378113300023108Salt MarshMNAEEIIKLNKKALYESLSSSDKFGKFFNKSILHNAAIMEVFSCNRLGGISYEKLCYSIPKSLGS
Ga0255743_1028936223300023110Salt MarshMNAEEIIKLNKKALYESLSNSDKFGKFYNKSILHNAAIMEVFSCNRLGGIS
Ga0228683_101759113300023694SeawaterMNAEEIIKLNKDALYSSLTSTDTFGKFFNKSILHY
Ga0228684_103564013300023704SeawaterMNAEEIIKLNKDALYSSLTSTDIFGKFFNKSILHYAA
Ga0228637_103532913300024192SeawaterMNAEEIIKLNKDALYSSLTSTDIFGKFFNKSILHYAAIMEIFSSNKLGGISYEKLCHSIPKSLGS
Ga0228633_114566223300024228SeawaterMNAEEIIKLNKEALYSSLTSSDIFGKFFNKSILHYAAIMEVFSFNKL
Ga0228678_104975913300024244SeawaterMNAEEIIKLNKDALYSSLTSTDTFGKFFNKSILHYAAIMEIFSSNKLGGISYEKLCHSIPKSLGSRS
Ga0233398_112796213300024320SeawaterMNAEEIIKLNKDALYSSLTSTDTFGKFFNKSILHYAAVMEIFSTNKLGGISYEKLCHSIPKSLGSRS
Ga0228626_102019123300024321SeawaterMNAEEIIKLNKDALYSSLTSTDTFGKFFNKSILHYAAIMEIFSSNKLGGISYEKLCHSIPKSLGSRSS
Ga0233393_109637523300024413SeawaterMNAEEIIKLNKDALYSSLTSTDIFGKFFNKSILHYAAIMEIFSSNKLGGISYEKLC
Ga0209663_100723813300025672MarineMNAEEIIKLMKKALYSSIKSPEIFGKFFNKSILHNAVVMEIFSNNINGICYEKLCFNIPK
Ga0209558_102795433300025729MarineMNAEEIIKLMKKALYSSIKSPEIFGKFFNKSILHNAVVMEIFSNNINGICYEKLCFNIPKSLGSRS
Ga0209362_101208013300025770MarineMNAEEIIKLMKKALYSSIKSPEIFGKFFNKSILHNAVVM
Ga0208425_105270023300025803AqueousMNAEEIIKLNKEALYSSLTSTDTFGKFFNKSILHYAAIMEIFSFNKLGGISYEKLCHSIPKSL
Ga0209630_1021894913300025892Pelagic MarineMNAEEIIKLNKEALYSSLTSTDTFGKFFNKSILHYAAIMEIFSFNKLGGI
Ga0247606_102377513300026398SeawaterMNAEEIIKLNKDALYSSLTSTDTFGKFFNKSILHYA
Ga0247580_105719213300026423SeawaterMNAEEIIKLNKEALYSSLTSSDIFGKFFNKSILHYAAIMEVFSFNKLGGIS
Ga0247559_103573723300026443SeawaterMNAEEIIKLNKDALYSSLTSTDTFGKFFNKSILHYAAVMEIFS
Ga0247607_106504813300026447SeawaterMNAEEIIKLNKDALYSSLTSTDTFGKFFNKSILHYAAIMEIFSSNKL
Ga0247568_104871713300026462SeawaterMNAEEIIKLNKDALYSSLTSTDSFGKFFNKSILHYAAIMEIFSSNKLGGISYEKLCH
Ga0228622_112122023300026479SeawaterMNAEEIIKLNKEALYSSLTSSDIFGKFFNKSILHYAAIMEV
Ga0247592_105259213300026500SeawaterMNAEEIIKLNKDALYSSLTSTDTFGKFFNKSILHYAAIMEIFFI
Ga0247590_101749913300026513SeawaterMNAEEIIKLNKEALYSSLTSSDIFGKFFNKSILHYAAIMEVFSFNK
Ga0228607_104965823300026517SeawaterMNAEEIIKLNKDALYSSLTSTDTFGKFFNKSILHYAAIMEIFSSNKLGGISY
Ga0208941_102421023300027077MarineMNAEEIIKLNKDALYSSLTSTDTFGKFFNKSILHYAAVMEIFST
Ga0247576_105668813300028099SeawaterMNAEEIIKLNKDALYSSLTSTDTFGKFFNKSILHYAAVMEIFSTNKLGGISYEKLCH
Ga0247596_108942423300028106SeawaterMNAEEIIKLNKDALYSSLTSTDIFGKFFNKSILHYAAIMEIFSSNKLGGISYEKLCHSIP
Ga0228642_107709423300028131SeawaterMNAEEIIKLNKDALYSSLTSTDTFGKFFNKSILHYAAVMEIFSTNKLGGISYEILCHSIP
Ga0256417_105581813300028233SeawaterMNAEEIIKLNKEALYSSLTSSDIFGKFFNKSILHYAAIMEVFSFNKLGGISYEKLCHSIPKSLG
Ga0256413_114711113300028282SeawaterMNVEEIIKLNKDALYSSLTSTDTFGKFFNKSILHYAAVMEIFSTNKLGGISYEKLCH
Ga0247601_102106713300028330SeawaterMNAEEIIKLNKDALYSSLTSTDTFGKFFNKSILHNAVIMEIFINNSKGIS
Ga0247583_108016613300028336SeawaterMNAEEIIKLNKDALYSSLTSTDIFGKFLNKSILHYA
Ga0257132_102098913300028671MarineMNAEEIIKLNKEVLYSSLTSTDTFGKFFNKSILHYAAIMEVFSSNKL
Ga0315331_1018177713300031774SeawaterMNAEEIINFNKKALYSSLTGTDTSSRFFNKSILHYAAS
Ga0315320_1025753813300031851SeawaterMNAEEIIKLNKDALYSSLTSTDTFGKFFNKSILHYAAVMEIFSTNKLGGISYEKLCHSIP
Ga0315320_1075500413300031851SeawaterMNAEEIIKLKKKALYSSIKSPEIFGKFFNKSILHNAVVMEIFSNNINGISYEKLCFNI
Ga0315330_1009435913300032047SeawaterMNAEEIIKLNKEALYSSLTSTDTFGKFFNKSILHYAAIMEVFSFNKIGGISYEKLCHSIPKA
Ga0315330_1058938513300032047SeawaterMNAEEIIKLNKDALYSSLTSTDTFGKFFNKSILHYAAI
Ga0315315_1096440923300032073SeawaterMSPEEIIKLNKEFLYSSFTSNDNFSKFFNKSILHYVAIMELFFYNKTEGIS
Ga0315315_1164857323300032073SeawaterMNAEEIINFNKKALYSSLTGTDTSSRFFNKSILHYAASMEIFSYNKTGGISYEKLCLSIPKTL
Ga0315321_1026188913300032088SeawaterMNAEEIIKLNKEALYSSLTSSDIFGKFFNKSILHYAAIMEVFSFNKLGGISYEKLCHS


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