NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F105178

Metagenome Family F105178

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F105178
Family Type Metagenome
Number of Sequences 100
Average Sequence Length 40 residues
Representative Sequence MSYIIVLPEGFLTSEVRAKSITRELYNITVPLAVQEEYQ
Number of Associated Samples 72
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 99.00 %
% of genes from short scaffolds (< 2000 bps) 91.00 %
Associated GOLD sequencing projects 56
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (56.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous
(57.000 % of family members)
Environment Ontology (ENVO) Unclassified
(85.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(91.000 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 58.97%    β-sheet: 10.26%    Coil/Unstructured: 30.77%
Feature Viewer
Powered by Feature Viewer

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF09206ArabFuran-catal 34.00
PF11367DUF3168 2.00
PF09956DUF2190 1.00
PF13385Laminin_G_3 1.00
PF05065Phage_capsid 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG4653Predicted phage phi-C31 gp36 major capsid-like proteinMobilome: prophages, transposons [X] 1.00

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A56.00 %
All OrganismsrootAll Organisms44.00 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000101|DelMOSum2010_c10165280Not Available788Open in IMG/M
3300000115|DelMOSum2011_c10122397All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage812Open in IMG/M
3300000116|DelMOSpr2010_c10161406Not Available756Open in IMG/M
3300000973|BBAY93_10149758Not Available587Open in IMG/M
3300006025|Ga0075474_10094729All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium968Open in IMG/M
3300006484|Ga0070744_10030817All Organisms → Viruses → Predicted Viral1587Open in IMG/M
3300006637|Ga0075461_10145114Not Available729Open in IMG/M
3300006793|Ga0098055_1031352Not Available2204Open in IMG/M
3300006802|Ga0070749_10172249Not Available1250Open in IMG/M
3300006802|Ga0070749_10280248All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage939Open in IMG/M
3300006869|Ga0075477_10256347Not Available703Open in IMG/M
3300006919|Ga0070746_10163089Not Available1079Open in IMG/M
3300006920|Ga0070748_1023078All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium2592Open in IMG/M
3300007276|Ga0070747_1103144All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium1051Open in IMG/M
3300007276|Ga0070747_1109569All Organisms → Viruses → Predicted Viral1013Open in IMG/M
3300007344|Ga0070745_1093230Not Available1184Open in IMG/M
3300007344|Ga0070745_1102009All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1121Open in IMG/M
3300007345|Ga0070752_1180672Not Available851Open in IMG/M
3300007345|Ga0070752_1216773Not Available756Open in IMG/M
3300007346|Ga0070753_1228699Not Available680Open in IMG/M
3300007538|Ga0099851_1109005All Organisms → Viruses → Predicted Viral1051Open in IMG/M
3300007540|Ga0099847_1141334Not Available719Open in IMG/M
3300007540|Ga0099847_1183958Not Available613Open in IMG/M
3300007640|Ga0070751_1104748All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium1166Open in IMG/M
3300007960|Ga0099850_1167031All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aestuariivirgaceae → Aestuariivirga → Aestuariivirga litoralis879Open in IMG/M
3300007960|Ga0099850_1175196All Organisms → cellular organisms → Bacteria853Open in IMG/M
3300008012|Ga0075480_10347861All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium741Open in IMG/M
3300009071|Ga0115566_10280331Not Available989Open in IMG/M
3300009071|Ga0115566_10630976Not Available598Open in IMG/M
3300009172|Ga0114995_10407477All Organisms → cellular organisms → Bacteria745Open in IMG/M
3300009434|Ga0115562_1162035Not Available826Open in IMG/M
3300009437|Ga0115556_1263129Not Available612Open in IMG/M
3300009438|Ga0115559_1211258Not Available698Open in IMG/M
3300009438|Ga0115559_1365188Not Available502Open in IMG/M
3300009472|Ga0115554_1079390All Organisms → Viruses → Predicted Viral1424Open in IMG/M
3300009476|Ga0115555_1133954All Organisms → Viruses → Predicted Viral1047Open in IMG/M
3300010316|Ga0136655_1202386Not Available591Open in IMG/M
3300013010|Ga0129327_10249706Not Available907Open in IMG/M
3300013010|Ga0129327_10441350Not Available696Open in IMG/M
3300017697|Ga0180120_10302333Not Available640Open in IMG/M
3300017710|Ga0181403_1084731Not Available659Open in IMG/M
3300017755|Ga0181411_1011890All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium2876Open in IMG/M
3300017769|Ga0187221_1030791All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium1814Open in IMG/M
3300017951|Ga0181577_10095008Not Available2069Open in IMG/M
3300017951|Ga0181577_10115598All Organisms → Viruses → Predicted Viral1847Open in IMG/M
3300017951|Ga0181577_10277722All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1094Open in IMG/M
3300018065|Ga0180430_10413017All Organisms → cellular organisms → Bacteria922Open in IMG/M
3300018065|Ga0180430_10693735Not Available703Open in IMG/M
3300020175|Ga0206124_10198504All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae792Open in IMG/M
3300021957|Ga0222717_10388441Not Available775Open in IMG/M
3300021958|Ga0222718_10220098All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1025Open in IMG/M
3300021959|Ga0222716_10267882Not Available1046Open in IMG/M
3300022050|Ga0196883_1002136All Organisms → Viruses → Predicted Viral2228Open in IMG/M
3300022050|Ga0196883_1040968Not Available563Open in IMG/M
3300022057|Ga0212025_1046708All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium SW_4_49_11746Open in IMG/M
3300022065|Ga0212024_1040215Not Available810Open in IMG/M
3300022068|Ga0212021_1063246Not Available757Open in IMG/M
3300022068|Ga0212021_1118412Not Available542Open in IMG/M
3300022072|Ga0196889_1013859Not Available1736Open in IMG/M
3300022176|Ga0212031_1021823All Organisms → Viruses → Predicted Viral1001Open in IMG/M
3300022176|Ga0212031_1059560Not Available646Open in IMG/M
3300022176|Ga0212031_1097734Not Available502Open in IMG/M
3300022178|Ga0196887_1003813All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium5680Open in IMG/M
3300022183|Ga0196891_1086407Not Available554Open in IMG/M
3300022934|Ga0255781_10099017All Organisms → Viruses → Predicted Viral1596Open in IMG/M
(restricted) 3300024518|Ga0255048_10524148Not Available573Open in IMG/M
3300025070|Ga0208667_1067050Not Available548Open in IMG/M
3300025641|Ga0209833_1082766Not Available970Open in IMG/M
3300025646|Ga0208161_1055997Not Available1236Open in IMG/M
3300025646|Ga0208161_1113187Not Available728Open in IMG/M
3300025646|Ga0208161_1151810Not Available577Open in IMG/M
3300025647|Ga0208160_1123840Not Available650Open in IMG/M
3300025652|Ga0208134_1145785Not Available602Open in IMG/M
3300025655|Ga0208795_1080630All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage902Open in IMG/M
3300025655|Ga0208795_1092834All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium819Open in IMG/M
3300025685|Ga0209095_1047576All Organisms → Viruses → Predicted Viral1565Open in IMG/M
3300025687|Ga0208019_1096087Not Available918Open in IMG/M
3300025687|Ga0208019_1098074All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage904Open in IMG/M
3300025699|Ga0209715_1092433All Organisms → Viruses → Predicted Viral1140Open in IMG/M
3300025704|Ga0209602_1133051Not Available823Open in IMG/M
3300025769|Ga0208767_1092479All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium1234Open in IMG/M
3300025769|Ga0208767_1096597Not Available1195Open in IMG/M
3300025769|Ga0208767_1110984Not Available1074Open in IMG/M
3300025769|Ga0208767_1167058All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium779Open in IMG/M
3300025769|Ga0208767_1179737All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium SW_4_49_11734Open in IMG/M
3300025803|Ga0208425_1044983Not Available1112Open in IMG/M
3300025803|Ga0208425_1063410Not Available903Open in IMG/M
3300025803|Ga0208425_1091887All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium715Open in IMG/M
3300025806|Ga0208545_1063047All Organisms → Viruses → Predicted Viral1058Open in IMG/M
3300025815|Ga0208785_1019553All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium2241Open in IMG/M
3300025815|Ga0208785_1046561All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium1232Open in IMG/M
3300025840|Ga0208917_1013948All Organisms → cellular organisms → Bacteria3503Open in IMG/M
3300025853|Ga0208645_1116703All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium1073Open in IMG/M
3300025853|Ga0208645_1211948Not Available676Open in IMG/M
3300025890|Ga0209631_10358463Not Available687Open in IMG/M
3300027805|Ga0209229_10040975Not Available2050Open in IMG/M
3300031565|Ga0307379_10671893Not Available935Open in IMG/M
3300031578|Ga0307376_10407717All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage892Open in IMG/M
3300033742|Ga0314858_058133Not Available947Open in IMG/M
3300034375|Ga0348336_088424All Organisms → Viruses → Predicted Viral1093Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous57.00%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine12.00%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient4.00%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh4.00%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine3.00%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water3.00%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine3.00%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater3.00%
Hypersaline Lake SedimentEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment2.00%
SoilEnvironmental → Terrestrial → Soil → Clay → Unclassified → Soil2.00%
Freshwater And SedimentEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment1.00%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater1.00%
Sea-Ice BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine1.00%
EstuarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine1.00%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater1.00%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine1.00%
Macroalgal SurfaceHost-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface1.00%

Visualization
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000101Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010EnvironmentalOpen in IMG/M
3300000115Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011EnvironmentalOpen in IMG/M
3300000116Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010EnvironmentalOpen in IMG/M
3300000973Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY93Host-AssociatedOpen in IMG/M
3300006025Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNAEnvironmentalOpen in IMG/M
3300006484Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535EnvironmentalOpen in IMG/M
3300006637Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNAEnvironmentalOpen in IMG/M
3300006793Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaGEnvironmentalOpen in IMG/M
3300006802Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18EnvironmentalOpen in IMG/M
3300006869Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_>0.8_DNAEnvironmentalOpen in IMG/M
3300006919Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21EnvironmentalOpen in IMG/M
3300006920Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12EnvironmentalOpen in IMG/M
3300007276Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31EnvironmentalOpen in IMG/M
3300007344Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4EnvironmentalOpen in IMG/M
3300007345Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30EnvironmentalOpen in IMG/M
3300007346Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31EnvironmentalOpen in IMG/M
3300007538Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaGEnvironmentalOpen in IMG/M
3300007540Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaGEnvironmentalOpen in IMG/M
3300007640Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28EnvironmentalOpen in IMG/M
3300007960Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaGEnvironmentalOpen in IMG/M
3300008012Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_<0.8_DNAEnvironmentalOpen in IMG/M
3300009071Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405EnvironmentalOpen in IMG/M
3300009172Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154EnvironmentalOpen in IMG/M
3300009434Pelagic marine microbial communities from North Sea - COGITO_mtgs_110516EnvironmentalOpen in IMG/M
3300009437Pelagic marine microbial communities from North Sea - COGITO_mtgs_110414EnvironmentalOpen in IMG/M
3300009438Pelagic marine microbial communities from North Sea - COGITO_mtgs_110506EnvironmentalOpen in IMG/M
3300009472Pelagic marine microbial communities from North Sea - COGITO_mtgs_110404EnvironmentalOpen in IMG/M
3300009476Pelagic marine microbial communities from North Sea - COGITO_mtgs_110407EnvironmentalOpen in IMG/M
3300010316Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.8_DNAEnvironmentalOpen in IMG/M
3300013010Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.8_DNAEnvironmentalOpen in IMG/M
3300017697Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_DNA (version 2)EnvironmentalOpen in IMG/M
3300017710Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 26 SPOT_SRF_2011-09-28EnvironmentalOpen in IMG/M
3300017755Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 34 SPOT_SRF_2012-07-09EnvironmentalOpen in IMG/M
3300017769Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 5 SPOT_SRF_2009-10-22 (version 2)EnvironmentalOpen in IMG/M
3300017951Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018065Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_S_2 metaGEnvironmentalOpen in IMG/M
3300020175Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160321_2EnvironmentalOpen in IMG/M
3300021957Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18DEnvironmentalOpen in IMG/M
3300021958Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27DEnvironmentalOpen in IMG/M
3300021959Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13DEnvironmentalOpen in IMG/M
3300022050Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (v3)EnvironmentalOpen in IMG/M
3300022057Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 (v2)EnvironmentalOpen in IMG/M
3300022065Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (v2)EnvironmentalOpen in IMG/M
3300022068Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (v2)EnvironmentalOpen in IMG/M
3300022072Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v3)EnvironmentalOpen in IMG/M
3300022176Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v2)EnvironmentalOpen in IMG/M
3300022178Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (v3)EnvironmentalOpen in IMG/M
3300022183Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (v3)EnvironmentalOpen in IMG/M
3300022934Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaGEnvironmentalOpen in IMG/M
3300024518 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_2EnvironmentalOpen in IMG/M
3300025070Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025641Pelagic marine microbial communities from North Sea - COGITO_mtgs_110506 (SPAdes)EnvironmentalOpen in IMG/M
3300025646Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025647Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025652Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (SPAdes)EnvironmentalOpen in IMG/M
3300025655Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025685Pelagic marine microbial communities from North Sea - COGITO_mtgs_110404 (SPAdes)EnvironmentalOpen in IMG/M
3300025687Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025699Pelagic marine microbial communities from North Sea - COGITO_mtgs_120503 (SPAdes)EnvironmentalOpen in IMG/M
3300025704Pelagic marine microbial communities from North Sea - COGITO_mtgs_120524 (SPAdes)EnvironmentalOpen in IMG/M
3300025769Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (SPAdes)EnvironmentalOpen in IMG/M
3300025803Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025806Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025815Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025840Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025853Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (SPAdes)EnvironmentalOpen in IMG/M
3300025890Pelagic Microbial community sample from North Sea - COGITO 998_met_08 (SPAdes)EnvironmentalOpen in IMG/M
3300027805Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)EnvironmentalOpen in IMG/M
3300031565Soil microbial communities from Risofladan, Vaasa, Finland - UN-2EnvironmentalOpen in IMG/M
3300031578Soil microbial communities from Risofladan, Vaasa, Finland - TR-2EnvironmentalOpen in IMG/M
3300033742Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - 2018 seawaterEnvironmentalOpen in IMG/M
3300034375Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v4)EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSum2010_1016528013300000101MarineMNGYIIVLPEGVLSSEQRAERISRELYCVTAPLATQEPYQH
DelMOSum2011_1012239713300000115MarineMNGFIIVLPEGVLSSEQRAERISRELYCVTAPLATQEP
DelMOSpr2010_1016140623300000116MarineMNGYIIVLPEGVLSSEQRAERISRELYCVTAPLATQEPYQHDG
BBAY93_1014975833300000973Macroalgal SurfaceMQYIIVLPEGTLTSEKRAKSITRELYNITTPLAVQQPYQKD
Ga0075474_1009472913300006025AqueousMQYIIVLPEGTLTSEKRAKSITRELYNITTPLAIQQPYQKD
Ga0070744_1003081723300006484EstuarineMNGYIIVLPEGVLSSEQRAERISRELYCVTAPLATQEPYQHDGKV
Ga0075461_1014511413300006637AqueousMSQYIIVLPEGFLTSEVRAKSITRELYNITVPVAVQEEYQKDATV
Ga0098055_103135223300006793MarineMSKYIIVLPVGVLTSETRAKQITRELYNITVPLAVQADYQKDG
Ga0070749_1017224913300006802AqueousMSKYIIVLPVGVLDSATRAKQITRELYNITVPLAVQADYQKD
Ga0070749_1028024823300006802AqueousMSNYIIVLPVGVLDSATRAKQITRELYNITVPLAVQ
Ga0075477_1025634713300006869AqueousMNGYIIVLPVGLLSSEARAKAITRELYNITVPVAV
Ga0070746_1016308913300006919AqueousMSYIIVLPEGFLTSEVRAKSITRELYITVPVAIQEEYQKDATV
Ga0070748_102307823300006920AqueousMNGYIIVLPEGVLSSEQRAERISRELYCVTAPLATQEPYQHDGKVFGMV
Ga0070747_110314413300007276AqueousMNGYIIVLPEGTLTGEHRAKAITRELYNITAPLVTQEPYQKDGT
Ga0070747_110956923300007276AqueousMNGYIIVLPEGVLTSEQRAERISRELYCVTAPLATQEP
Ga0070745_109323013300007344AqueousMSKYIIVLPEGTLTSEKRAKSITRELYNITTPLAVQQPYQKD
Ga0070745_110200913300007344AqueousMSNYIIVLPVGVLDSATRAKQITRELYNITVPLAVQA
Ga0070752_118067223300007345AqueousMSNYIIVLPVGVLDSATRAKQITRELYNITVPLAVQADYQK
Ga0070752_121677313300007345AqueousMSKYIIVLPVGVLDSATRAKQITRELYNITVPLAVQADYQKDGQVF
Ga0070753_122869923300007346AqueousMSQYIIVLPEGTLTSEKRAKSITRELYNITTPLAIQQPYQKDGT
Ga0099851_110900523300007538AqueousMSYIIVLPEGFLTSEVRAKSITRELYNITVPLAVQEEYQKD
Ga0099847_114133423300007540AqueousMSKYIIVLPVGVLDSATRATQITRELYNITVPLAVQADYQKDG
Ga0099847_118395823300007540AqueousMNGYIIVLPEGVLTSEQRAERISRELYCVTAPLATQEPYQH
Ga0070751_110474813300007640AqueousMSKYIIVLPVGVSDSATRAKQITRELYNITVPLAVQA
Ga0099850_116703123300007960AqueousMSYIIVLPEGFLTSEVRAKSITRELYNITVPLAVQEEYQKDG
Ga0099850_117519623300007960AqueousMSYIIVLPEGFLTSEVRAKSITRELYNITVPLAVQEEY
Ga0075480_1034786123300008012AqueousMSQYIIVLPEGFLTSEVRAKSITRELYNITVPVAIQKEY*
Ga0115566_1028033123300009071Pelagic MarineMNGYIIVLPEGTLTSEHRAKAITRELYNITAPLVT
Ga0115566_1063097613300009071Pelagic MarineMAQYIIVLPEGTLTSEHRAKAITRELYNITAPLVTQE
Ga0114995_1040747713300009172MarineMNGYIIVLPEGVLSSEQRAERISRELYCVTAPLATQEPYQHDGK
Ga0115562_116203523300009434Pelagic MarineMDGYIIVLPEGTLTSEHRAKAITRELYNITAPLVTQEPYQ
Ga0115556_126312923300009437Pelagic MarineMNGFIIVLPEGTLTSEHRAKAITRELYNITAPLVTQE
Ga0115559_121125823300009438Pelagic MarineMNGFIIVLPEGVLTSEQRAERISRELYCVTAPLATQEP
Ga0115559_136518823300009438Pelagic MarineMNGYIIVLPEGVLSSEQRAERISRELYCVTAPLATQ
Ga0115554_107939023300009472Pelagic MarineMNGFIIVLPEGTLTSEHRAKAITRELYNITAPLVTQ
Ga0115555_113395423300009476Pelagic MarineMDGYIIVLPEGTLTSEHRAKAITRELYNITAPLVTQEPYQKDG
Ga0136655_120238623300010316Freshwater To Marine Saline GradientMNGYIIVLPEGVLTSEQRAERISRELYCVTAPLATQEPY
Ga0129327_1024970623300013010Freshwater To Marine Saline GradientMNYIIVLPEGVLNSEQRANRISEELYNITAPLAIQQPYQ
Ga0129327_1044135013300013010Freshwater To Marine Saline GradientMNGFIIVLPEGVLSSEQRAERISRELYCVTAPLATQEPYQHDGK
Ga0180120_1030233313300017697Freshwater To Marine Saline GradientMNGYIIVLPEGVLSSEQRAERISRELYCVTAPLAT
Ga0181403_108473123300017710SeawaterMAQQYIIVLAEGTLTSEKRANSITRELYNITTPLAVQEPY
Ga0181411_101189023300017755SeawaterMQYIIVLPEGTLTSEKRANSITRELYNITTPLAVQEP
Ga0187221_103079123300017769SeawaterMAQQYIIVLPEGTLTSEKRAKSITRELYNITTPLAVQEPYQKDG
Ga0181577_1009500823300017951Salt MarshMSQYIIVLPAGVLTSETRAKQITRELYNITLPIAVQ
Ga0181577_1011559823300017951Salt MarshMSKYIIVLPAGVLTSETRAKQITRELYNITLPIAVQQEY
Ga0181577_1027772223300017951Salt MarshMSKYIIVLPAGVLTSETRAKQITRELYNITLPIAVQEEYHKG
Ga0180430_1041301723300018065Hypersaline Lake SedimentMNGYIIVLPEGVLTSKERAEAITRELYCITTPRAVQEPHQ
Ga0180430_1069373523300018065Hypersaline Lake SedimentMHGYIIVLPEGVLTSKERAEAITRELYCITTPRAVQEP
Ga0206124_1019850423300020175SeawaterMNGYIIVLPEGVLSSEQRAERISRELYCVTAPLATQEPYQHP
Ga0222717_1038844123300021957Estuarine WaterMAQYIIVLPEGTLTSEHRAKAITRELYNITAPLVTQEPYQKDGTVLGV
Ga0222718_1022009823300021958Estuarine WaterMSKYIIVLPVGVLDSATRAKQITRELYNITVPLAVQADYQKDG
Ga0222716_1026788213300021959Estuarine WaterMNYIIVLPEGVLNSEQRANRISEELYNITAPLAIQQP
Ga0196883_100213613300022050AqueousMSYIIVLPEGFLTSEVRAKSITRELYNITVPVAVQEE
Ga0196883_104096823300022050AqueousMSQYIIVLPEGFLTSEVRAKSITRELYNITVPVAIQKEYQKDATV
Ga0212025_104670813300022057AqueousMQYIIVLPEGTLTSEKRAKSITRELYNITTPLAVQQ
Ga0212024_104021523300022065AqueousMSKYIIVLPVGVLDSATRAKQITRELYNITVPLAVQADYQ
Ga0212021_106324623300022068AqueousMSNYIIVLPVGVLDSATRAKQITRELYNITVPLAVQADYQKDGQVF
Ga0212021_111841223300022068AqueousMQYIIVLPEGTLTSEKRAKSITRELYNITTPLAVQEPYQK
Ga0196889_101385913300022072AqueousMDGYIIVLPEGVLSSEQRAERISRELYCVTAPLATQE
Ga0212031_102182323300022176AqueousMNGYIIVLPEGVLTSKERAEAITRELYCITTPRAVQEPYQADGTVF
Ga0212031_105956023300022176AqueousMSHYIIVLPVGVLDSATRAKQITRELYNITVPLAVQADYQKDG
Ga0212031_109773413300022176AqueousMNGYIIVLPQGIHNSKERAEAITRELYCITTPRAVQEPYQHDG
Ga0196887_100381363300022178AqueousMNGYIIVLPEGVLSSEQRAERISRELYCVTAPLATQEPYQHDGKVFGM
Ga0196891_108640723300022183AqueousMSKYIIVLPVGVLDSATRAKQITRELYNITVPLAVQADYQKDGQVFG
Ga0255781_1009901713300022934Salt MarshMSKYIIVLPAGVLTSETRAKQITRELYNITLPIAVQQ
(restricted) Ga0255048_1052414813300024518SeawaterMSKYIIVLPVGVLDSATRAKQITRELYNITVPLAI
Ga0208667_106705013300025070MarineMGYIIILPEGFLTSEVRAKSITRELYNITVPVAIQEEYQKD
Ga0209833_108276613300025641Pelagic MarineMDGYIIVLPEGTLTSEHRAKAITRELYNITAPLVTQEPYQKDGT
Ga0208161_105599713300025646AqueousMSKYIIVLPVGVLDSATRAKQITRELYNITVPLAVQA
Ga0208161_111318723300025646AqueousMSNYIIVLPVGVLDSATRAKQITRELYNITVPLAVQADYQKDG
Ga0208161_115181023300025646AqueousMNGYIIVLPQGVHNSKERAESITRELYCITTPRAVQ
Ga0208160_112384013300025647AqueousMSYIIVLPEGFLTSEVRAKSITRELYNITVPLAVQAE
Ga0208134_114578513300025652AqueousMNYIIVLPEGVLNSEQRANRISQELYNITAPLAIQ
Ga0208795_108063023300025655AqueousMSYIIVLPEGFLTSEVRAKSITRELYNITVPLAVQE
Ga0208795_109283413300025655AqueousMNGYIIVLPQGIHNSKERAEAITRELYCITTPRAVQEPYQ
Ga0209095_104757623300025685Pelagic MarineMAQYIIVLPEGTLTSEHRAKAITRELYNITAPLVTQEPYQKDGT
Ga0208019_109608713300025687AqueousMSYIIVLPEGFLTSEVRAKSITRELYNITVPLAVQEE
Ga0208019_109807423300025687AqueousMSYIIVLPEGFLTSEVRAKSITRELYNITVPLAVQEEYQ
Ga0209715_109243313300025699Pelagic MarineMNGFIIVLPEGTLTSEHRAKAITRELYNITAPLVTQEPYQKD
Ga0209602_113305123300025704Pelagic MarineMNGYIIVLPEGVLSSEQRAERISRELYCVTAPLATQEPYQHDGKVF
Ga0208767_109247913300025769AqueousMAQQYIIVLAEGTLTSEKRAKSITRELYNITTPLAVQEPYQK
Ga0208767_109659723300025769AqueousMSKYIIVLPVGVLDSATRAKQITRELYNITVPLAVQAD
Ga0208767_111098413300025769AqueousMSKYIIVLPVGVLDSSTRAKQITRELYNITVPLAVQADYQKDG
Ga0208767_116705823300025769AqueousMSKYIIVLPVGVLDSATRAKQITRELYNITVPLAVQADY
Ga0208767_117973723300025769AqueousMSYIIVLPEGFLTSEVRAKSITRELYNITVPVAIQEEYQ
Ga0208425_104498323300025803AqueousMSKYIIVLPVGVLDSATRAKQITRELYNITVPLAVQADYQKDGQV
Ga0208425_106341013300025803AqueousMSKYIIVLPVGVLDSATRAKQITRELYNITVPLAVQ
Ga0208425_109188713300025803AqueousMAQYIIVLPEGTLTSEKRAKSITRELYNITTPLAIQEPYQKDGAV
Ga0208545_106304723300025806AqueousMNGYIIVLPEGVLSSEQRAERISRELYCVTAPLATQEPYQHDGKVFGMVE
Ga0208785_101955313300025815AqueousVLPEGTLTSEKRAKSITRELYNITTPLAIQQPYQKDGTVFGVI
Ga0208785_104656123300025815AqueousMAQQYIIVLPEGTLTSEKRAKSITRELYNITTPLAI
Ga0208917_101394813300025840AqueousMNGYIIVLPVGLLSSEARAKAITRELYNITVPVAVQ
Ga0208645_111670323300025853AqueousMQYIIVLPEGTLTSEKRAKSITRELYNITTPLAIQQPYQKDGTV
Ga0208645_121194813300025853AqueousMQYIIVLPEGTLTSEKRAKSITRELYNITTPLAIQQPYQ
Ga0209631_1035846323300025890Pelagic MarineMNGFIIVLPEGTLTSEHRAKAITRELYNITAPLVTQEPY
Ga0209229_1004097523300027805Freshwater And SedimentMGYIIVLPQSPLNSAQRAAAISRELYCITTPVAVQQPYQAEGNVFGVIA
Ga0307379_1067189313300031565SoilMNGYIIVLPEGVLSSEQRAERISRELYCVTAPLATQEPYQHDGKVFGIVE
Ga0307376_1040771723300031578SoilMNGYIIVLPEGVLSSEQRAERISRELYCVTAPLATQEPYQ
Ga0314858_058133_813_9473300033742Sea-Ice BrineMNGYIIVLPEGVLSSEQRAERISRELYCVTAPLATQEPYQHDGIL
Ga0348336_088424_3_1073300034375AqueousMSYIIVLPEGFLTSEVRAKSITRELYNITVPLAVQ

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.