NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F105176

Metagenome / Metatranscriptome Family F105176

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F105176
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 48 residues
Representative Sequence METLFIQTATELKTFMLNTKTPSKLIDRIVNDLLDLYPNCDWWIEEGWK
Number of Associated Samples 75
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 2.00 %
% of genes near scaffold ends (potentially truncated) 27.00 %
% of genes from short scaffolds (< 2000 bps) 72.00 %
Associated GOLD sequencing projects 65
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (71.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(18.000 % of family members)
Environment Ontology (ENVO) Unclassified
(63.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(97.000 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 69.39%    β-sheet: 0.00%    Coil/Unstructured: 30.61%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF04466Terminase_3 29.00
PF027395_3_exonuc_N 3.00
PF12850Metallophos_2 1.00
PF00149Metallophos 1.00
PF13455MUG113 1.00
PF02195ParBc 1.00
PF02945Endonuclease_7 1.00
PF08299Bac_DnaA_C 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG1783Phage terminase large subunitMobilome: prophages, transposons [X] 29.00
COG02585'-3' exonuclease Xni/ExoIX (flap endonuclease)Replication, recombination and repair [L] 3.00
COG0593Chromosomal replication initiation ATPase DnaAReplication, recombination and repair [L] 1.00


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A71.00 %
All OrganismsrootAll Organisms29.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001348|JGI20154J14316_10073189Not Available1250Open in IMG/M
3300001351|JGI20153J14318_10052572Not Available1463Open in IMG/M
3300001351|JGI20153J14318_10068887Not Available1140Open in IMG/M
3300003580|JGI26260J51721_1005810All Organisms → Viruses → Predicted Viral3881Open in IMG/M
3300003580|JGI26260J51721_1046625Not Available693Open in IMG/M
3300005837|Ga0078893_11633921Not Available6327Open in IMG/M
3300006029|Ga0075466_1157174All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes582Open in IMG/M
3300006484|Ga0070744_10036503Not Available1451Open in IMG/M
3300006484|Ga0070744_10135606Not Available707Open in IMG/M
3300006484|Ga0070744_10169485Not Available625Open in IMG/M
3300006750|Ga0098058_1118317Not Available710Open in IMG/M
3300006750|Ga0098058_1168419Not Available575Open in IMG/M
3300006752|Ga0098048_1077123All Organisms → Viruses → Predicted Viral1021Open in IMG/M
3300006789|Ga0098054_1357232Not Available517Open in IMG/M
3300006793|Ga0098055_1103239All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1113Open in IMG/M
3300006793|Ga0098055_1112948All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1057Open in IMG/M
3300006810|Ga0070754_10509863Not Available517Open in IMG/M
3300006920|Ga0070748_1003363Not Available7327Open in IMG/M
3300006924|Ga0098051_1074935Not Available918Open in IMG/M
3300006924|Ga0098051_1121423Not Available696Open in IMG/M
3300007647|Ga0102855_1027644All Organisms → Viruses → Predicted Viral1562Open in IMG/M
3300007647|Ga0102855_1080248Not Available877Open in IMG/M
3300007953|Ga0105738_1003522All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.1738Open in IMG/M
3300008050|Ga0098052_1282726Not Available629Open in IMG/M
3300008999|Ga0102816_1287132Not Available522Open in IMG/M
3300009002|Ga0102810_1296040Not Available502Open in IMG/M
3300009058|Ga0102854_1026910All Organisms → Viruses → Predicted Viral1658Open in IMG/M
3300009074|Ga0115549_1051878All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1461Open in IMG/M
3300009076|Ga0115550_1018408All Organisms → Viruses → Predicted Viral3395Open in IMG/M
3300009076|Ga0115550_1126448Not Available915Open in IMG/M
3300009130|Ga0118729_1025578All Organisms → Viruses → Predicted Viral3866Open in IMG/M
3300009423|Ga0115548_1025323Not Available2342Open in IMG/M
3300009433|Ga0115545_1311419Not Available522Open in IMG/M
3300009434|Ga0115562_1074295All Organisms → Viruses → Predicted Viral1416Open in IMG/M
3300009435|Ga0115546_1279250Not Available570Open in IMG/M
3300009442|Ga0115563_1021341Not Available3535Open in IMG/M
3300009442|Ga0115563_1021794Not Available3484Open in IMG/M
3300009495|Ga0115571_1013775All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae → Parvibaculum → unclassified Parvibaculum → Parvibaculum sp.4333Open in IMG/M
3300009495|Ga0115571_1188239Not Available849Open in IMG/M
3300010150|Ga0098056_1221964All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes629Open in IMG/M
3300010150|Ga0098056_1273903Not Available558Open in IMG/M
3300010151|Ga0098061_1098752Not Available1089Open in IMG/M
3300010155|Ga0098047_10345810All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes559Open in IMG/M
3300011253|Ga0151671_1027054Not Available823Open in IMG/M
3300011253|Ga0151671_1066229Not Available501Open in IMG/M
3300011253|Ga0151671_1066230Not Available547Open in IMG/M
3300017706|Ga0181377_1004922All Organisms → Viruses → Predicted Viral3610Open in IMG/M
3300017719|Ga0181390_1091782Not Available824Open in IMG/M
3300017749|Ga0181392_1154910Not Available670Open in IMG/M
3300017751|Ga0187219_1123060Not Available767Open in IMG/M
3300017753|Ga0181407_1116620Not Available667Open in IMG/M
3300017772|Ga0181430_1187502Not Available593Open in IMG/M
3300017772|Ga0181430_1244887Not Available506Open in IMG/M
3300017773|Ga0181386_1217194Not Available571Open in IMG/M
3300017783|Ga0181379_1009339All Organisms → Viruses → Predicted Viral4145Open in IMG/M
3300020165|Ga0206125_10016649Not Available4633Open in IMG/M
3300020165|Ga0206125_10034866Not Available2668Open in IMG/M
3300020166|Ga0206128_1005676Not Available9217Open in IMG/M
3300020187|Ga0206130_10434245Not Available516Open in IMG/M
3300021185|Ga0206682_10217859Not Available862Open in IMG/M
3300021365|Ga0206123_10021181All Organisms → Viruses → Predicted Viral3856Open in IMG/M
3300021371|Ga0213863_10030214All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2994Open in IMG/M
3300021371|Ga0213863_10071648All Organisms → Viruses → Predicted Viral1726Open in IMG/M
(restricted) 3300022920|Ga0233426_10071504All Organisms → Viruses → Predicted Viral1594Open in IMG/M
(restricted) 3300023210|Ga0233412_10024089Not Available2425Open in IMG/M
3300023568|Ga0228696_1031942Not Available604Open in IMG/M
3300024180|Ga0228668_1007842All Organisms → Viruses → Predicted Viral2736Open in IMG/M
3300024180|Ga0228668_1033033Not Available1091Open in IMG/M
3300024185|Ga0228669_1045076Not Available920Open in IMG/M
3300024236|Ga0228655_1010110All Organisms → Viruses → Predicted Viral2495Open in IMG/M
3300024248|Ga0228676_1002431All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes4374Open in IMG/M
(restricted) 3300024255|Ga0233438_10173028Not Available908Open in IMG/M
3300024313|Ga0228624_1074634Not Available632Open in IMG/M
3300024326|Ga0228652_1058329Not Available977Open in IMG/M
3300024326|Ga0228652_1126473Not Available564Open in IMG/M
3300024329|Ga0228631_1114817Not Available623Open in IMG/M
3300024346|Ga0244775_10357273Not Available1205Open in IMG/M
3300024346|Ga0244775_10884321All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes710Open in IMG/M
3300024346|Ga0244775_11193055Not Available593Open in IMG/M
3300024348|Ga0244776_10111979All Organisms → Viruses → Predicted Viral2028Open in IMG/M
3300024348|Ga0244776_10857871Not Available542Open in IMG/M
3300025098|Ga0208434_1102560Not Available557Open in IMG/M
3300025099|Ga0208669_1088582Not Available657Open in IMG/M
3300025108|Ga0208793_1117074All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae → unclassified Balneolaceae → Balneolaceae bacterium731Open in IMG/M
3300025133|Ga0208299_1029517Not Available2302Open in IMG/M
3300025577|Ga0209304_1009553Not Available3669Open in IMG/M
3300025621|Ga0209504_1007449Not Available5548Open in IMG/M
3300025621|Ga0209504_1086636Not Available848Open in IMG/M
3300025640|Ga0209198_1007725Not Available5971Open in IMG/M
3300025809|Ga0209199_1009262Not Available7588Open in IMG/M
3300025860|Ga0209119_1033545Not Available2769Open in IMG/M
3300025860|Ga0209119_1186812Not Available817Open in IMG/M
3300025860|Ga0209119_1310388Not Available555Open in IMG/M
3300025874|Ga0209533_1082012Not Available1681Open in IMG/M
3300026460|Ga0247604_1067447Not Available845Open in IMG/M
3300026483|Ga0228620_1008153All Organisms → Viruses → Predicted Viral3057Open in IMG/M
3300026505|Ga0228647_1132660Not Available576Open in IMG/M
3300027204|Ga0208924_118223Not Available570Open in IMG/M
3300027212|Ga0208554_1060419Not Available592Open in IMG/M
3300028338|Ga0247567_1040550All Organisms → Viruses → Predicted Viral1209Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine18.00%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater16.00%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine16.00%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine9.00%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater8.00%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine7.00%
EstuarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine6.00%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater5.00%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine4.00%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater3.00%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous3.00%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine2.00%
Marine Surface WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water1.00%
Estuary WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water1.00%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater1.00%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001348Pelagic Microbial community sample from North Sea - COGITO 998_met_04EnvironmentalOpen in IMG/M
3300001351Pelagic Microbial community sample from North Sea - COGITO 998_met_03EnvironmentalOpen in IMG/M
3300003580Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI074_LV_120m_DNAEnvironmentalOpen in IMG/M
3300005837Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18EnvironmentalOpen in IMG/M
3300006029Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNAEnvironmentalOpen in IMG/M
3300006484Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535EnvironmentalOpen in IMG/M
3300006750Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaGEnvironmentalOpen in IMG/M
3300006752Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaGEnvironmentalOpen in IMG/M
3300006789Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaGEnvironmentalOpen in IMG/M
3300006793Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaGEnvironmentalOpen in IMG/M
3300006810Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01EnvironmentalOpen in IMG/M
3300006920Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12EnvironmentalOpen in IMG/M
3300006924Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaGEnvironmentalOpen in IMG/M
3300007647Estuarine microbial communities from the Columbia River estuary - metaG 1370B-02EnvironmentalOpen in IMG/M
3300007953Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1373A_3umEnvironmentalOpen in IMG/M
3300008050Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaGEnvironmentalOpen in IMG/M
3300008999Estuarine microbial communities from the Columbia River estuary - Flood tide non-ETM metaG S.545EnvironmentalOpen in IMG/M
3300009002Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.573EnvironmentalOpen in IMG/M
3300009058Estuarine microbial communities from the Columbia River estuary - metaG 1370A-02EnvironmentalOpen in IMG/M
3300009074Pelagic marine microbial communities from North Sea - COGITO_mtgs_100430EnvironmentalOpen in IMG/M
3300009076Pelagic marine microbial communities from North Sea - COGITO_mtgs_100511EnvironmentalOpen in IMG/M
3300009130Combined Assembly of Gp0139511, Gp0139512EnvironmentalOpen in IMG/M
3300009423Pelagic marine microbial communities from North Sea - COGITO_mtgs_100423EnvironmentalOpen in IMG/M
3300009433Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330EnvironmentalOpen in IMG/M
3300009434Pelagic marine microbial communities from North Sea - COGITO_mtgs_110516EnvironmentalOpen in IMG/M
3300009435Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413EnvironmentalOpen in IMG/M
3300009442Pelagic marine microbial communities from North Sea - COGITO_mtgs_110519EnvironmentalOpen in IMG/M
3300009495Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531EnvironmentalOpen in IMG/M
3300010150Marine viral communities from the Subarctic Pacific Ocean - 17B_ETSP_OMZ_AT15314_CsCl metaGEnvironmentalOpen in IMG/M
3300010151Marine viral communities from the Subarctic Pacific Ocean - 22_ETSP_OMZ_AT15343 metaGEnvironmentalOpen in IMG/M
3300010155Marine viral communities from the Subarctic Pacific Ocean - 12_ETSP_OMZ_AT15267 metaGEnvironmentalOpen in IMG/M
3300011253Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_2, permeateEnvironmentalOpen in IMG/M
3300017706Marine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaGEnvironmentalOpen in IMG/M
3300017719Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21EnvironmentalOpen in IMG/M
3300017749Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15EnvironmentalOpen in IMG/M
3300017751Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21 (version 2)EnvironmentalOpen in IMG/M
3300017753Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 30 SPOT_SRF_2012-01-26EnvironmentalOpen in IMG/M
3300017772Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 53 SPOT_SRF_2014-04-10EnvironmentalOpen in IMG/M
3300017773Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 9 SPOT_SRF_2010-03-24EnvironmentalOpen in IMG/M
3300017783Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 2 SPOT_SRF_2009-07-10EnvironmentalOpen in IMG/M
3300020165Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1EnvironmentalOpen in IMG/M
3300020166Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1EnvironmentalOpen in IMG/M
3300020187Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160512_1EnvironmentalOpen in IMG/M
3300021185Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015EnvironmentalOpen in IMG/M
3300021365Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160316_1EnvironmentalOpen in IMG/M
3300021371Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497EnvironmentalOpen in IMG/M
3300022920 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_10_MGEnvironmentalOpen in IMG/M
3300023210 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_4_MGEnvironmentalOpen in IMG/M
3300023568Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 84R (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024180Seawater microbial communities from Monterey Bay, California, United States - 82DEnvironmentalOpen in IMG/M
3300024185Seawater microbial communities from Monterey Bay, California, United States - 84DEnvironmentalOpen in IMG/M
3300024236Seawater microbial communities from Monterey Bay, California, United States - 67DEnvironmentalOpen in IMG/M
3300024248Seawater microbial communities from Monterey Bay, California, United States - 48D_rEnvironmentalOpen in IMG/M
3300024255 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_10_MGEnvironmentalOpen in IMG/M
3300024313Seawater microbial communities from Monterey Bay, California, United States - 29DEnvironmentalOpen in IMG/M
3300024326Seawater microbial communities from Monterey Bay, California, United States - 64DEnvironmentalOpen in IMG/M
3300024329Seawater microbial communities from Monterey Bay, California, United States - 39DEnvironmentalOpen in IMG/M
3300024346Whole water sample coassemblyEnvironmentalOpen in IMG/M
33000243480.2um to 3um size fraction coassemblyEnvironmentalOpen in IMG/M
3300025098Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025099Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025108Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025133Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025577Pelagic marine microbial communities from North Sea - COGITO_mtgs_100423 (SPAdes)EnvironmentalOpen in IMG/M
3300025621Pelagic marine microbial communities from North Sea - COGITO_mtgs_100511 (SPAdes)EnvironmentalOpen in IMG/M
3300025640Pelagic marine microbial communities from North Sea - COGITO_mtgs_110519 (SPAdes)EnvironmentalOpen in IMG/M
3300025809Pelagic marine microbial communities from North Sea - COGITO_mtgs_110523 (SPAdes)EnvironmentalOpen in IMG/M
3300025860Pelagic Microbial community sample from North Sea - COGITO 998_met_03 (SPAdes)EnvironmentalOpen in IMG/M
3300025874Pelagic Microbial community sample from North Sea - COGITO 998_met_04 (SPAdes)EnvironmentalOpen in IMG/M
3300026460Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 85R (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300026483Seawater microbial communities from Monterey Bay, California, United States - 23DEnvironmentalOpen in IMG/M
3300026505Seawater microbial communities from Monterey Bay, California, United States - 59DEnvironmentalOpen in IMG/M
3300027204Estuarine microbial communities from the Columbia River estuary - metaG 1370B-3 (SPAdes)EnvironmentalOpen in IMG/M
3300027212Estuarine microbial communities from the Columbia River estuary - metaG 1371B-02 (SPAdes)EnvironmentalOpen in IMG/M
3300028338Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 15R (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
JGI20154J14316_1007318923300001348Pelagic MarineMETLFIQTTTELKHFILNTKIPSELTDRIVNDLLDLYPNCDWWIEDGWKL*
JGI20153J14318_1005257223300001351Pelagic MarineMETLFIQTATELKTFMLNTQTPSKLIDRIVNDLIDLYPNCDWWIEEGWK*
JGI20153J14318_1006888723300001351Pelagic MarineMETLFIQTATELKHFILNTKIPSELTDRIVNDLIDLYPNCDWWIEDGWKL*
JGI26260J51721_100581023300003580MarineMETLFIQTKKELKPFILNTEASPKLIDKVVNDLLDLYPNCDWWIEEGWK*
JGI26260J51721_104662523300003580MarineMETLFIQTATELKHFILNTKIPSESTDRIVNDLIDLYPNCDWWIEEGWKL*
Ga0078893_11633921133300005837Marine Surface WaterMETLFIQTATELKHFILNTKIPSELTDRIVNDLLDLYPNCDWWIEEGWKL*
Ga0075466_115717423300006029AqueousMETLFIQTATELKHFILNTKIPSELTDRIVNDLLDLYPNCDWWIEDGWKL*
Ga0070744_1003650323300006484EstuarineMETLFIQTATELKHFILNTKIPSELTDRIVNDLIDLYPNCDWWIEEGWKL*
Ga0070744_1013560623300006484EstuarineMETLFIQTKTELKTFILNTKTSSKLIDKVVNDLLDLYPSCDWWIEDGWR*
Ga0070744_1016948523300006484EstuarineMETLFIQTATELKHFILNTKIPSELTDKIVNDLLDLYPNCDWWIEDGWKL*
Ga0098058_111831723300006750MarineMETLFIQTKTELKPFILNTETSPKLIDKVVNDLLDLYPNCDWWIEDGWK*
Ga0098058_116841923300006750MarineMETLFIQTATELKTFMLNTKTPSKLIDRIVNDLIDLYPNCDWWIEEGWK*
Ga0098048_107712313300006752MarineMQTLFIQTKVELKPFILNTETSPKLIDKVVNDLLDLYPNCDWWIEDGWK*
Ga0098054_135723213300006789MarineMQTLFIQTSTELKPFILNTQTSPKLIDKVVNDLLDLYPNCDWWIEEGWK*
Ga0098055_110323923300006793MarineMETLFIQTATELKAFMLNTKTSSKLIDKVVNDLIDLYPNCDWWIEEGWK*
Ga0098055_111294833300006793MarineMQTLFIQTKVELKPFILNTETSPKLIDKVVNDLLDLYPNCDWWIEEGWK*
Ga0070754_1050986323300006810AqueousMETLFIQTKTELKPFILNTETSPKLIDKVVNDLLDLYPNCDWWIEEGWK*
Ga0070748_1003363153300006920AqueousMETLFIQTATELKHFILNTKIPSELTNRIVNDLLDLYPNCDWWIEDGWKL*
Ga0098051_107493523300006924MarineMETLFIQTSTELKTFVLNTQTSSKLIDKVVNDLLDLYPNCDWWIEDGWK*
Ga0098051_112142313300006924MarineMQTLFIQTNTELKPFILNTETSPKLIDKVVNDLLDLYPNCDWWIEDGWK*
Ga0102855_102764423300007647EstuarineMETLFIQTATELKAFMLNTKTPSKLIDRIVNDLIDLYPNCDWWIEEGWK*
Ga0102855_108024813300007647EstuarineTELKHFILNTKIPSELTDRIVNDLIDLYPNCDWWIEEGWKL*
Ga0105738_100352263300007953Estuary WaterMETLFIQTATELKAFMLNTKTPSKLIDRIVNDLIDLYPNC
Ga0098052_128272613300008050MarineMETLFIQTATELKTFVLNTKTSSKLIDKVVNDLLDLYPNCDWWIEDGWR*
Ga0102816_128713213300008999EstuarineMETLFIQTATELKTFMLNTKTPSKLIDRIVNDLIDLYPNCDWWIEEGWKL*
Ga0102810_129604023300009002EstuarineELKHFILNTKIPSELTDRIVNDLIDLYPNCDWWIEEGWKL*
Ga0102854_102691023300009058EstuarineMETLFIQTATELKHFILNTKIPSELTDRIVNDLIDLYPNCDWWIEEGWRL*
Ga0115549_105187833300009074Pelagic MarineMETLFIQTKIELKPFILNTETSPKLIDKVVNDLLDLYPNCDWWIEEGWK*
Ga0115550_101840823300009076Pelagic MarineMETLFIQTSTELKHFILNTKIPSELTDRIVNDLLDLYPNCDWWIEDGWKL*
Ga0115550_112644813300009076Pelagic MarineMETLFIQTATELKTFMLNTKTPSKLIDRIVNDLIDLYPNCDWWIEEGWR*
Ga0118729_102557873300009130MarineMETLFIQTKQELKTFILNTKIPSELTDRIVNDLLDLYPNCDWWIEDGWVL*
Ga0115548_102532353300009423Pelagic MarineMETLFIQTKIELKPFILNTETSPKLIDKVVNDLLDLYPNCDWWIEESWK*
Ga0115545_131141913300009433Pelagic MarineMETLFIQTATELKHFILNTKIPSELTDRIVNDLLDLYPNCDWWI
Ga0115562_107429523300009434Pelagic MarineATELKTFMLNTQTPSKLIDRIVNDLIDLYPNCDWWIEEGWK*
Ga0115546_127925013300009435Pelagic MarineMETLFIQTATELKHFILNTKIPSELIDRIVNDLLDLYPNCDWWIEDGWKL*
Ga0115563_1021341133300009442Pelagic MarineMETLFIQTATELKTFILNTQTPSKLIDRIVNDLLDLYPNCDWWIEEGWK*
Ga0115563_1021794143300009442Pelagic MarineMETLFIQTATELKTFMLNTQTPSKLIDRIVNDLIDLYPNCDWWI
Ga0115571_101377523300009495Pelagic MarineMETLFIQTATELKTSMLNTKTPSKLIDRIVNDLIDLYPNCDWWIEEGWK*
Ga0115571_118823913300009495Pelagic MarineTFMLNTKTPSKLIDRIVNDLIDLYPNCDWWIEEGWK*
Ga0098056_122196423300010150MarineMETLFIQTAKELKTFMLNTKTSSKLIDKVVNDLLDLYPNCDWWIEDGWR*
Ga0098056_127390313300010150MarineMETLFIQTKTELKPFILNTQTSPKLIDKVVNDLLDLYPNCDWWIEEGWK*
Ga0098061_109875223300010151MarineMQMQTLFIQTKVELKPFILNTQTSPKLIDKVVNDLLDLYPNCDWWIEEGWK*
Ga0098047_1034581013300010155MarineMETLFIQTATELKTFMLNTKTPSKLIDRIVNDLIDLYPNCDWWIEDGWK*
Ga0151671_102705423300011253MarineMETLFIQTKTELKPFILNTKIPSELTDRIVNDLLDLYPNCDWWIEEGWK*
Ga0151671_106622913300011253MarineMETLFIQTKTELKPFILNTEIPSKLTDGIVNDLLDLYPNCDWWIEEGWK*
Ga0151671_106623013300011253MarineMETLFIQTKTELKPFILNTKIPSELTDRIVNDLLDLYPNC
Ga0181377_100492213300017706MarineMETLFIQTKTELKPFILNTEASPKLIDKVVNDLLDLYPNCDWWIEEGWKL
Ga0181390_109178223300017719SeawaterMETLFIQTATELKHFILNTKSPSELTDKIVNDLLDLYPNCDWWIEDGWKL
Ga0181392_115491023300017749SeawaterMQTLFIQTKVELKPFILNTETSPKLIDKVVNDLLDLYPNCDWWIEEGWK
Ga0187219_112306013300017751SeawaterKTFMLNTKTPSKLIDRIVNDLIDLYPNCDWWIEEGWK
Ga0181407_111662023300017753SeawaterMETLFIQTSTELKTFMLNTKTPSKLIDRIVNDLIDLYPNCDWWIEEGWK
Ga0181430_118750213300017772SeawaterTATELKHFILNTKIPSELTDRIVNDLIDLYPNCDWWIEEGWKL
Ga0181430_124488713300017772SeawaterMETLFIQTKKELKHFILNTQIPSQTTDKFVNDLLNTHPDCDWWIQEGWKL
Ga0181386_121719413300017773SeawaterMETLFIQTKTELKTFILNTKTSSKLIDKVVNDLLDLYPSCDWWIEEGWK
Ga0181379_100933983300017783SeawaterMQTLFIQTKVELKPFILNTETSPKLIDKVVSDLLDLYPNCDWWIEEGWR
Ga0206125_10016649143300020165SeawaterMETLFIQTATELKTFTLNTQTPSKLIDRIVNDLIDLYPNCDWWIEDGWKL
Ga0206125_1003486613300020165SeawaterMETLFIQTATELKHFILNTKIPSELTDRIVNDLIDLYPNCDWWIEDGWKL
Ga0206128_1005676133300020166SeawaterMETLFIQTATELKTFMLNTQTPSKLIDRIVNDLIDLYPNCDWWIEEGWK
Ga0206130_1043424513300020187SeawaterMETLFIQTATELKTFMLNTQTPSKLIDRIVNDLIDLYPNCD
Ga0206682_1021785913300021185SeawaterMETLFIQTATELKTFMLNTKTPSKLIDRIVNDLIDLYPNCDWWIEEGWK
Ga0206123_1002118123300021365SeawaterMETLFIQTATELKHFILNTKIPSELTDRIVNDLLDLYPNCDWWIEDGWKL
Ga0213863_10030214113300021371SeawaterMETLFIQTATELKHFILNTKIPSELTDRIVNDLLDLYPNCDWWIEEGWK
Ga0213863_1007164823300021371SeawaterMETLFIQTKTELKPFILNTETSPKLIDKVVNDLLDLYPNCDWWIEEGWK
(restricted) Ga0233426_1007150433300022920SeawaterMETLFIQTATELKHFILNTKIPSELTDRIVNDLIDLYPNCDWWIEEGWKL
(restricted) Ga0233412_1002408963300023210SeawaterMETLFIQTATELKHFILNTKIPSESTDRIVNDLIDLYPNCDWWIEEGWKL
Ga0228696_103194213300023568SeawaterMQTLFIQTNTELKPFILNTETSPKLIDKVVNDLLDLYPNCDWWIEEGWK
Ga0228668_100784283300024180SeawaterMETLFIQTNTELKPFILNTETSPKLIDKVVNDLLDLYPNCDWWIEEGWK
Ga0228668_103303323300024180SeawaterMQTLFIQTNTELKPFILNAETSPKLIDKVVNDLLDLYPNCDWWIEEGWK
Ga0228669_104507613300024185SeawaterMETLFIQTATELKHFILNTKISSELTDKIVNDLLDLYPNC
Ga0228655_101011043300024236SeawaterMETLFIQTTKELKHFILNTKIPSELTDKIVNDLLDLYPNCDWWIEDGWKL
Ga0228676_100243123300024248SeawaterMQTLFIQTNTELKPFILNTETPSKLIDRIVNDLIDLYPNCDWWIEEGWK
(restricted) Ga0233438_1017302823300024255SeawaterMETLFIQTATELKTFMLNTKTPSKLIDRIVNDLLDLYPNCDWWIEEGWK
Ga0228624_107463413300024313SeawaterFIQTKTELKPFILNTETSPKLIDKVVNDLLDLYPNCDWWIEEGWK
Ga0228652_105832913300024326SeawaterMETLFIQTTKELKHFILNTKIPSELTDKIVNDLLDLYPNCDWWIED
Ga0228652_112647313300024326SeawaterNIGNYPIILNKRQMETLFIQTATELKTFMLNTKTPSKLIDRIVNDLIDLYPNCDWWIEEGWK
Ga0228631_111481713300024329SeawaterIILNIRQMQTLFIQTNTELKPFILNAETSPKLIDKVVNDLLDLYPNCDWWIEEGWK
Ga0244775_1035727333300024346EstuarineMETLFIQTKTELKTFILNTKTSSKLIDKVVNDLLDLYPSCDWWIEDGWR
Ga0244775_1088432123300024346EstuarineMETLFIQTATELKTFMLNTKTPSKLIDRIVNDLIDLYPNCDWWIEEGWKL
Ga0244775_1119305513300024346EstuarineMETLFIQTATELKTFMLNTKTTSKLIDRIVNDLLDLYPNCDWWIEEGWK
Ga0244776_1011197933300024348EstuarineMETLFIQTATELKAFMLNTKTPSKLIDRIVNDLIDLYPNCDWWIEEGWK
Ga0244776_1085787113300024348EstuarineMETLFIQTATELKHFILNTKIPSELTDRIVNDLIDLYPSCDWWIEEGWKL
Ga0208434_110256013300025098MarineTLFIQTKVELKPFILNTETSPKLIDKVVNDLLDLYPNCDWWIEDGWK
Ga0208669_108858223300025099MarineQTATELKTFMLNTKTPSKLIDRIVNDLIDLYPNCDWWIEDGWK
Ga0208793_111707413300025108MarineMQTLFIQTKVELKPFILNTETSPKLIDKVVNDLLDLYPNCDWWIEDGWK
Ga0208299_102951743300025133MarineMETLFIQTATELKTFMLNTKTSSKLIDKVVNDLLDLYPNCDWWIEDGWR
Ga0209304_100955393300025577Pelagic MarineMETLFIQTKIELKPFILNTETSPKLIDKVVNDLLDLYPNCDWWIEEGWK
Ga0209504_1007449103300025621Pelagic MarineMETLFIQTSTELKHFILNTKIPSELTDRIVNDLLDLYPNCDWWIEDGWKL
Ga0209504_108663623300025621Pelagic MarineMETLFIQTATELKTFMLNTKTPSKLIDRIVNDLIDLYPNCDWWIEEGWR
Ga0209198_1007725183300025640Pelagic MarineMETLFIQTATELKTFILNTQTPSKLIDRIVNDLLDLYPNCDWWIEEGWK
Ga0209199_1009262253300025809Pelagic MarineMETLFIQTATELKTFMLNTQTPSKLIDRIVNDLIDLYPNCDWWIEEGWR
Ga0209119_103354513300025860Pelagic MarineMETLFIQTATELKTFMLNTKTPSKLIDRIVNDLIDLYPNCDWWIEEGW
Ga0209119_118681213300025860Pelagic MarineQTATELKTFMLNTKTPSKLIDRIVNDLIDLYPNCDWWIEEGWK
Ga0209119_131038813300025860Pelagic MarineQTATELKTFMLNTKTPSKLIDRIVNDLIDLYPNCDWWIEEGWR
Ga0209533_108201223300025874Pelagic MarineMETLFIQTTTELKHFILNTKIPSELTDRIVNDLLDLYPNCDWWIEDGWKL
Ga0247604_106744723300026460SeawaterNIRQMQTLFIQTNTELKPFILNAETSPKLIDKVVNDLLDLYPNCDWWIEEGWK
Ga0228620_100815313300026483SeawaterMETLFIQTATELKHFILNTKISSELTDKIVNDLLDLYPNCDWWIEDGWK
Ga0228647_113266013300026505SeawaterFIQTATELKHFILNTKISSELTDKIVNDLLDLYPNCDWWIEDGWKL
Ga0208924_11822313300027204EstuarineMETLFIQTATELKTFVLNTKTPSKLIDRIVNDLIDLYPNCDWWIEEGWK
Ga0208554_106041913300027212EstuarineMETLFIQTATELKAFMLNTKTPSKLIDRIVNDLIDLYPNCDWWIEEG
Ga0247567_104055013300028338SeawaterIILNKRQMETLFIQTATELKTFMLNTKTPSKLIDRIVNDLIDLYPNCDWWIEEGWK


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